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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
GOEx - Gene Ontology Explorer
 
Resource Report
Resource Website
10+ mentions
GOEx - Gene Ontology Explorer (RRID:SCR_005779) GOEx software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented July 5, 2018. Gene Ontology Explorer (GOEx) combines data from protein fold changes with GO over-representation statistics to help draw conclusions in proteomic experiments. It is tightly integrated within the PatternLab for Proteomics project and, thus, lies within a complete computational environment that provides parsers and pattern recognition tools designed for spectral counting. GOEx offers three independent methods to query data: an interactive directed acyclic graph, a specialist mode where key words can be searched, and an automatic search. A recent hack included in GOEx is to load the sparse matrix index file directly into GOEx, instead of going through the report generation using the AC/T-fold methods. This makes it easy for GOEx to analyze any list of proteins as long as the list follows the index file format (described in manuscript) . Please note that if using this alternative strategy, there will be no protein fold information. Platform: Windows compatible proteomics, visualization, statistical analysis, gene ontology, parse, pattern recognition, spectral counting, analysis, protein fold is listed by: Gene Ontology Tools
is related to: Gene Ontology
has parent organization: Scripps Research Institute
CNPq ;
CAPES ;
FAPERJ BBP grant ;
PAPES ;
PDTIS ;
Ary Frauzino Foundation ;
NIAID ;
NIH ;
genesis molecular biology laboratory ;
Fiocruz-INCA collaboration ;
NIAID UCSD/MCB0237059;
NCRR P41RR011823;
NIMH 5R01 MH067880
PMID:19239707 THIS RESOURCE IS NO LONGER IN SERVICE nlx_149249 http://pcarvalho.com/patternlab/goex.shtml SCR_005779 Gene Ontology Explorer, GO Explorer 2026-08-01 12:02:59 26
PennCNV
 
Resource Report
Resource Website
100+ mentions
PennCNV (RRID:SCR_002518) PennCNV software resource A free software tool for Copy Number Variation (CNV) detection from SNP genotyping arrays. Currently it can handle signal intensity data from Illumina and Affymetrix arrays. With appropriate preparation of file format, it can also handle other types of SNP arrays and oligonucleotide arrays. PennCNV implements a hidden Markov model (HMM) that integrates multiple sources of information to infer CNV calls for individual genotyped samples. It differs form segmentation-based algorithm in that it considered SNP allelic ratio distribution as well as other factors, in addition to signal intensity alone. In addition, PennCNV can optionally utilize family information to generate family-based CNV calls by several different algorithms. Furthermore, PennCNV can generate CNV calls given a specific set of candidate CNV regions, through a validation-calling algorithm. imaging genomics, copy number variation, snp, genotyping array, array, oligonucleotide, hidden markov model, genotype, genome is listed by: OMICtools
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: VegaMC
is related to: OpenBioinformatics.org
has parent organization: University of Pennsylvania; Philadelphia; USA
NIMH MH604687 PMID:17921354 Free OMICS_00729, nlx_155921 http://www.openbioinformatics.org/penncnv/
http://www.neurogenome.org/cnv/penncnv SCR_002518 PennCNV: copy number variation detection 2026-08-01 12:02:11 349
MATRICS - Measurement And Treatment Research to Improve Cognition in Schizophrenia
 
Resource Report
Resource Website
1+ mentions
MATRICS - Measurement And Treatment Research to Improve Cognition in Schizophrenia (RRID:SCR_005644) MATRICS knowledge environment Cognitive deficits -- including impairments in areas such as memory, attention, and executive function -- are a major determinant and predictor of long-term disability in schizophrenia. Unfortunately, available antipsychotic medications are relatively ineffective in improving cognition. Scientific discoveries during the past decade suggest that there may be opportunities for developing medications that will be effective for improving cognition in schizophrenia. The NIMH has identified obstacles that are likely to interfere with the development of pharmacological agents for treating cognition in schizophrenia. These include: (1) a lack of a consensus as to how cognition in schizophrenia should be measured; (2) differing opinions as to the pharmacological approaches that are most promising; (3) challenges in clinical trial design; (4) concerns in the pharmaceutical industry regarding the US Food and Drug Administration''s (FDA) approaches to drug approval for this indication; and (5) issues in developing a research infrastructure that can carry out clinical trials of promising drugs. The MATRICS program will bring together representatives of academia, industry, and government in a consensus process for addressing all of these obstacles. Specific goals of the NIMH MATRICS are: * To catalyze regulatory acceptance of cognition in schizophrenia as a target for drug registration. * To promote development of novel compounds to enhance cognition in schizophrenia. * Leverage economic research power of industry to focus on important but neglected clinical targets. * Identify lead compounds and if deemed feasible, support human proof of concept trials for cognition in schizophrenia. schizophrenia, cognitive deficit, memory, attention, executive function, disability, cognition, clinical has parent organization: University of California at Los Angeles; California; USA Schizophrenia NIMH nlx_146271 SCR_005644 Measurement And Treatment Research to Improve Cognition in Schizophrenia, Measurement Treatment Research to Improve Cognition in Schizophrenia 2026-08-01 12:02:57 6
Autism Genetic Resource Exchange
 
Resource Report
Resource Website
1+ mentions
Autism Genetic Resource Exchange (RRID:SCR_004403) AGRE biomaterial supply resource, material resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. A private repository of clinical and genetic information on families with autism. Genetic and clinical data are obtained from families that have more than one family member diagnosed with an Autism Spectrum Disorder. The biological samples, along with the accompanying clinical data, are made available to AGRE-approved researchers worldwide. As they become available, additional family pedigrees will be posted in the online catalog. Cell lines have been established for the majority of families in this collection and serum/plasma is available on a subset of the subjects until stocks are depleted. The diagnosis of autism has been made using the standard Autism Diagnostic Interview-Revised (ADI-R) algorithm and the Autism Diagnostic Observation Scale (ADOS-G). Detailed birth and medical histories (including basic dysmorphology assessments) on children as well as family and medical information for parents and unaffected siblings, are available for nearly all families. DNA, cell lines, serum, plasma and clinical information are made available to AGRE-approved researchers for analysis. family registry, gene bank, genetics, autism diagnostic, interview, autism diagnostic observational scale, autism spectrum disorder, birth, clinical data, genome scan, genotypic data, medical history, pedigree, phenotypic data, dna, cell line, serum, plasma, biorepository, biospecimen, pervasive development disorder is listed by: One Mind Biospecimen Bank Listing
has parent organization: Autism Speaks
Autism, Autism spectrum disorder, Pervasive Development Disorder NIMH 1U24MH081810 PMID:20955925 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00226 SCR_004403 2026-08-01 12:10:50 1
CATIE - Clinical Antipsychotic Trials in Intervention Effectiveness
 
Resource Report
Resource Website
CATIE - Clinical Antipsychotic Trials in Intervention Effectiveness (RRID:SCR_005615) CATIE, CATIE Schizophrenia, Clinical Antipsychotic Trials in Intervention Effectiveness clinical trial The NIMH-funded Clinical Antipsychotic Trials of Intervention Effectiveness (CATIE) Study was a nationwide public health-focused clinical trial that compared the effectiveness of older (first available in the 1950s) and newer (available since the 1990s) antipsychotic medications used to treat schizophrenia. These newer medications, known as atypical antipsychotics, cost roughly 10 times as much as the older medications. CATIE is the largest, longest, and most comprehensive independent trial ever done to examine existing therapies for this disease. Schizophrenia is a brain disorder characterized by hallucinations, delusions, and disordered thinking. The course of schizophrenia is variable, but usually is recurrent and chronic, often causing severe disability. Previous studies have shown that taking antipsychotic medications consistently is far more effective than taking no medicine and that the drugs are necessary to manage the disease. The aim of the CATIE study was to determine which medications provide the best treatment for schizophrenia. Additional information may be found by following the links, http://www.nimh.nih.gov/trials/practical/catie/index.shtml, http://www.clinicaltrials.gov/ct/show/NCT00014001?order=1 schizophrenia, clinical trial, treatment, outcome, antipsychotic is used by: Limited Access Datasets From NIMH Clinical Trials
is listed by: ClinicalTrials.gov
is related to: CATIE - Alzheimers Disease
is related to: NIMH Repository and Genomics Resources
has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA
Schizophrenia NIMH SCR_005512, nlx_146233, nlx_146234 http://www.nimh.nih.gov/health/trials/practical/catie/phase1results.shtml http://www.nimh.nih.gov/health/trials/practical/catie/index.shtml SCR_005615 CATIE Schizophrenia Study, Clinical Antipsychotic Trials in Intervention Effectiveness, Clinical Antipsychotic Trials in Intervention Effectiveness - Schizophrenia 2026-08-01 12:10:38 0
Autopatcher
 
Resource Report
Resource Website
1+ mentions
Autopatcher (RRID:SCR_017464) software resource, software application Software tool for neuronal recording in intact brain. Neuronal, recording, intact, brain, BRAIN Initiative is recommended by: BRAIN Initiative NIMH MH106027 PMID:29297466 Free, Available for download, Freely available SCR_017464 2026-08-01 12:11:08 2
pyRayleighCuda
 
Resource Report
Resource Website
pyRayleighCuda (RRID:SCR_017453) software resource, software application Python Rayleigh-Sommerfeld integral for acoustics with optional CUDA graphics processing unit (GPU) implementation. Rayleigh-Sommerfeld, integral, acoustics, CUDA, graphics, processing, unit, BRAIN Initiative is recommended by: BRAIN Initiative NIMH MH109105 Free, Freely available SCR_017453 2026-08-01 12:11:01 0
Open Ephys: Pulse Pal
 
Resource Report
Resource Website
1+ mentions
Open Ephys: Pulse Pal (RRID:SCR_017203) instrument resource Open source pulse train generator that allows users to create and trigger software defined trains of voltage pulses with high temporal precision. Generates precisely timed pulse sequences for use in research involving electrophysiology or psychophysics. instrument, generator, stimulation, voltage, puls, sequence, electrophysiology, psychophysics NINDS R01 NS07553;
NIMH R01 MH097061;
McKnight Foundation
DOI:10.3389/fneng.2014.00043 Available for purchase https://sanworks.io/shop/viewproduct?productID=1102, https://github.com/sanworks/PulsePal, https://sites.google.com/site/pulsepalwiki/specifications?authuser=0 SCR_017203 Pulse Pal v2 2026-08-01 12:05:47 1
NeuroRD
 
Resource Report
Resource Website
10+ mentions
NeuroRD (RRID:SCR_014769) simulation software, software resource, software application Stochastic reaction-diffusion simulator in Java which is used for simulating neuronal signaling pathways. simulation software, simulator, java, neuronal signaling pathway, neuron HFSP ;
NIMH K21-MH01141;
NSF IBN 0077509;
CRCNS program R01 AA16022;
CRCNS program AA18066
Available for download https://github.com/neurord/stochdiff/releases SCR_014769 2026-08-02 09:06:39 13
XTRACT
 
Resource Report
Resource Website
1+ mentions
XTRACT (RRID:SCR_024933) software resource, software application Software command line tool for automated tractography. Standardised protocols for automated tractography in human and macaque brain. automated tractography, tractography, human, macaque, brain is a plug in for: FSL Medical Research Council PhD Studentship UK ;
Marie Skłodowska-Curie Individual Fellowship Grant ;
Biotechnology and Biological Sciences Research Council ;
Netherlands Organization for Scientific Research NWO Netherlands ;
Sir Henry Dale Wellcome Trust Fellowship UK ;
MRC Career Development Fellowship UK ;
Wellcome Trust Collaborative Award UK ;
UK Engineering and Physical Sciences Research Council ;
Wellcome Trust grant UK ;
Human Connectome Project ;
NIMH 1U54MH091657;
McDonnell Center for Systems Neuroscience at Washington University ;
NIH ;
UK Biobank Resource ;
Wellcome Trust
PMID:32407993 Free, Freely available SCR_024933 2026-08-01 12:13:08 2
NeuroMab
 
Resource Report
Resource Website
1000+ mentions
NeuroMab (RRID:SCR_003086) NeuroMab organization portal, data or information resource, portal A national mouse monoclonal antibody generating resource for biochemical and immunohistochemical applications in mammalian brain. NeuroMabs are generated from mice immunized with synthetic and recombinant immunogens corresponding to components of the neuronal proteome as predicted from genomic and other large-scale cloning efforts. Comprehensive biochemical and immunohistochemical analyses of human, primate and non-primate mammalian brain are incorporated into the initial NeuroMab screening procedure. This yields a subset of mouse mAbs that are optimized for use in brain (i.e. NeuroMabs): for immunocytochemical-based imaging studies of protein localization in adult, developing and pathological brain samples, for biochemical analyses of subunit composition and post-translational modifications of native brain proteins, and for proteomic analyses of native brain protein networks. The NeuroMab facility was initially funded with a five-year U24 cooperative grant from NINDS and NIMH. The initial goal of the facility for this funding period is to generate a library of novel NeuroMabs against neuronal proteins, initially focusing on membrane proteins (receptors/channels/transporters), synaptic proteins, other neuronal signaling molecules, and proteins with established links to disease states. The scope of the facility was expanded with supplements from the NIH Blueprint for Neuroscience Research to include neurodevelopmental targets, the NIH Roadmap for Medical Research to include epigenetics targets, and NIH Office of Rare Diseases Research to include rare disease targets. These NeuroMabs will then be produced on a large scale and made available to the neuroscience research community on an inexpensive basis as tissue culture supernatants or purified immunoglobulin by Antibodies Inc. The UC Davis/NIH NeuroMab Facility makes NeuroMabs available directly to end users and is unable to accommodate sales to distributors for third party distribution. Note, NeuroMab antibodies are now offered through antibodiesinc. antibody, brain, channel, disease-related protein, k channel subunit, mab, mammalian, membrane protein, monoclonal antibody, mouse, neuronal monoclonal antibody, neuronal protein, neuronal signaling molecule, reagent, receptor, research reagent, synaptic protein, transporter is used by: NIF Data Federation
is listed by: OMICtools
has parent organization: University of California at Davis; California; USA
NINDS ;
NIMH ;
NIH Blueprint for Neuroscience Research ;
NIH Roadmap for Medical Research ;
Office of Rare Diseases Research ;
Antibodies Inc.
Free, Freely available grid.482686.6, nif-0000-00175 https://ror.org/00fyrp007 SCR_003086 UCDavis/NIH NeuroMab Facility, antibodies.inc, antibodiesinc.com, antibodiesinc 2026-08-02 09:03:54 1810
Cambridge Brain Activation
 
Resource Report
Resource Website
10+ mentions
Cambridge Brain Activation (RRID:SCR_007109) CamBA software toolkit, workflow software, software application, data processing software, image analysis software, software resource Suite of programs developed for fMRI analysis in a Virtual Pipeline Laboratory facilitates combining program modules from different software packages into processing pipelines to create analysis solutions which are not possible with a single software package alone. Current pipelines include fMRI analysis, statistical testing based on randomization methods and fractal spectral analysis. Pipelines are continually being added. The software is mostly written in C. This fMRI analysis package supports batch processing and comprises the following general functions at the first level of individual image analysis: movement correction (interpolation and regression), time series modeling, data resampling in the wavelet domain, hypothesis testing at voxel and cluster levels. Additionally, there is code for second level analysis - group and factorial or ANOVA mapping - after co-registration of voxel statistic maps from individual images in a standard space. The main point of difference from other fMRI analysis packages is the emphasis throughout on the use of data resampling (permutation or randomization) as a basis for inference on individual, group and factorial test statistics at voxel and cluster levels of resolution. analysis, brain, anova, resampling, statistical, wavelet, fmri, pipeline, affine warp, algorithm or reusable library, application, c, image-to-template, java, linux, macos, magnetic resonance, nifti-1, posix/unix-like, registration, regression, spatial transformation, spectral analysis, statistical operation, temporal transformation, time domain analysis, unix shell, warping, wavelet transformation, web environment is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Biositemaps
has parent organization: University of Cambridge; Cambridge; United Kingdom
GlaxoSmithKline ;
Human Brain Project ;
NIMH ;
NIBIB
GNU General Public License nif-0000-00267 http://www-bmu.psychiatry.cam.ac.uk/software/ SCR_007109 2026-08-03 09:33:16 11
fMRI Data Center
 
Resource Report
Resource Website
10+ mentions
fMRI Data Center (RRID:SCR_007278) fMRIDC data repository, data or information resource, database, storage service resource, service resource THIS RESOURCE IS NO LONGER IN SERVICE, documented August 25, 2013 Public curated repository of peer reviewed fMRI studies and their underlying data. This Web-accessible database has data mining capabilities and the means to deliver requested data to the user (via Web, CD, or digital tape). Datasets available: 107 NOTE: The fMRIDC is down temporarily while it moves to a new home at UCLA. Check back again in late Jan 2013! The goal of the Center is to help speed the progress and the understanding of cognitive processes and the neural substrates that underlie them by: * Providing a publicly accessible repository of peer-reviewed fMRI studies. * Providing all data necessary to interpret, analyze, and replicate these fMRI studies. * Provide training for both the academic and professional communities. The Center will accept data from those researchers who are publishing fMRI imaging articles in peer-reviewed journals. The goal is to serve the entire fMRI community. fmri, cognitive, cortex, mri, talairach, neuroimaging, cognitive neuroscience, brain, structure, function, magnetic resonance, intellect, image collection, data set is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Biositemaps
is listed by: re3data.org
has parent organization: University of California at Santa Barbara; California; USA
NSF ;
W. M. Keck Foundation ;
NIMH ;
Sun Microsystems Center of Excellence
PMID:11545705 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00025 http://www.fmridc.org/ SCR_007278 The fMRI Data Center 2026-08-03 09:33:24 16
Lyngby
 
Resource Report
Resource Website
1+ mentions
Lyngby (RRID:SCR_007143) Lyngby software resource, data processing software, software application, data analysis software Matlab toolbox for the analysis of functional neuroimages (PET, fMRI). The toolbox contains a number of models: FIR-filter, Lange-Zeger, K-means clustering among others, visualizations and reading of neuroimaging files. functional, statistical, fmri, pet, matlab, neuroimaging is listed by: Biositemaps
has parent organization: THOR Center for Neuroinformatics
Human Brain Project ;
Danish Research Council ;
European Union ;
BIOMED2 ;
MAPAWAMO ;
NASA ;
NSF ;
DOE ;
NIDA R01 DA09246;
NIMH P20 MH57180
Free, Non-commercial nif-0000-00324 SCR_007143 Lyngby Toolbox, Lyngby - A Toolbox for Functional Neuroimaging 2026-08-03 09:33:23 2
Center for Inherited Disease Research
 
Resource Report
Resource Website
100+ mentions
Center for Inherited Disease Research (RRID:SCR_007339) CIDR data computation service, production service resource, resource, material analysis service, analysis service resource, training service resource, biomaterial analysis service, service resource Next generation sequencing and genotyping services provided to investigators working to discover genes that contribute to disease. On-site statistical geneticists provide insight into analysis issues as they relate to study design, data production and quality control. In addition, CIDR has a consulting agreement with the University of Washington Genetics Coordinating Center (GCC) to provide statistical and analytical support, most predominantly in the areas of GWAS data cleaning and methods development. Completed studies encompass over 175 phenotypes across 530 projects and 620,000 samples. The impact is evidenced by over 380 peer-reviewed papers published in 100 journals. Three pathways exist to access the CIDR genotyping facility: * NIH CIDR Program: The CIDR contract is funded by 14 NIH Institutes and provides genotyping and statistical genetic services to investigators approved for access through competitive peer review. An application is required for projects supported by the NIH CIDR Program. * The HTS Facility: The High Throughput Sequencing Facility, part of the Johns Hopkins Genetic Resources Core Facility, provides next generation sequencing services to internal JHU investigators and external scientists on a fee-for-service basis. * The JHU SNP Center: The SNP Center, part of the Johns Hopkins Genetic Resources Core Facility, provides genotyping to internal JHU investigators and external scientists on a fee-for-service basis. Data computation service is included to cover the statistical genetics services provided for investigators seeking to identify genes that contribute to human disease. Human Genotyping Services include SNP Genome Wide Association Studies, SNP Linkage Scans, Custom SNP Studies, Cancer Panel, MHC Panels, and Methylation Profiling. Mouse Genotyping Services include SNP Scans and Custom SNP Studies. gene, genome, array, custom, dna, genome wide association study, genotyping, genotyping service, linkage scan, methylation profiling, hereditary disease, single gene disorder, snp, statistical genetics, whole genome, whole exome, exome sequencing, high throughput sequencing, single nucleotide polymorphism, sequencing, disease is listed by: NIDDK Information Network (dkNET)
has parent organization: Johns Hopkins University; Maryland; USA
Aging NHGRI ;
NCI ;
NEI ;
NIA ;
NIAAA ;
NIAMS ;
NICHD ;
NIDA ;
NIDCD ;
NIDCR ;
NIDDK ;
NIEHS ;
NIMH ;
NINDS ;
NHGRI N01-HG-65403;
US Department of Health and Human Services HHSN268200782096C;
S Department of Health and Human Services HHSN268201100011I;
S Department of Health and Human Services HHSN268201200008I;
NHGRI U01HG004438;
NHGRI U54HG006542
nif-0000-00223 SCR_007339 CIDR - Center for Inherited Disease Research 2026-08-03 09:33:20 206
Brain Architecture Management System
 
Resource Report
Resource Website
1+ mentions
Brain Architecture Management System (RRID:SCR_007251) BAMS data repository, ontology, service resource, database, storage service resource, controlled vocabulary, data or information resource Knowledge management system designed to handle neurobiological information at different levels of organization of vertebrate nervous system. Database and repository for information about neural circuitry, storing and analyzing data concerned with nomenclature, taxonomy, axonal connections, and neuronal cell types. Handles data and metadata collated from original literature, or inserted by scientists that is associated to four levels of organization of vertebrate nervous system. Data about expressed molecules, neuron types and classes, brain regions, and networks of brain regions. neurobiology, vertebrate, nervous, system, database, repository, neural, circuitry, analysis, data, nomenclature, taxonomy, axonal, connection, cell, is used by: NIF Data Federation
is used by: Integrated Nervous System Connectivity
is related to: Integrated Manually Extracted Annotation
has parent organization: University of Southern California; Los Angeles; USA
is parent organization of: BAMS Nested Regions
is parent organization of: BAMS Connectivity
is parent organization of: BAMS Cells
is parent organization of: BAMS Neuroanatomical Ontology
NIBIB ;
Human Brain Project ;
NIMH MH61223;
NINDS NS16686;
NINDS NS50792
Restricted nif-0000-00018 http://brancusi.usc.edu/bkms/ SCR_007251 Brain Architecture Management System, The Brain Architecture Management System 2026-08-03 09:33:19 6
JAX Neuroscience Mutagenesis Facility
 
Resource Report
Resource Website
1+ mentions
JAX Neuroscience Mutagenesis Facility (RRID:SCR_007437) NMU biomaterial supply resource, material resource, organism supplier Produce new neurological mouse models that could serve as experimental models for the exploration of basic neurobiological mechanisms and diseases. The impetus for the program resulted from the recognition that: * The value of genomic data would remain limited unless more information about the functionality of its individual components became available. * The task of linking genes to specific behavior would best be accomplished by employing a combination of different approaches. In an effort to complement already existing programs, the Neuroscience Mutagenesis Facility decided to use: a random, genome-wide approach to mutagenesis, i.e.N-ethyl-N-nitrosourea (ENU) as the mutagen; a three-generation back-cross breeding scheme to focus on the detection of recessive mutations; behavioral screens selective for the detection of phenotypes deemed useful for the program goals. The resulting mutant mouse lines have been available to the scientific community for the last five years and over 700 NMF mice have been sent to interested investigators for research; these mutant mouse lines will remain available as frozen embryos (which can be re-derived on request) and can be ordered through the JAX customer service at 1-800-422-6423 (or 207-288-5845). The results of the work of the Neuroscience Mutagenesis Facility and that of two other neurogenesis centers, i.e. The Neurogenomics Project at Northwestern University, and the Neuromutagenesis Project of the Tennessee Mouse Genome Consortium, can also be seen at Neuromice.org, a common web site of these three research centers; in addition, information about all mutants produced by these groups has been recorded in MGI. mouse model, mutant mouse line, mutant mouse, phenodeviant, phenodeviant mouse, heritability, phenotyping, genetic mapping is listed by: One Mind Biospecimen Bank Listing
is related to: neuromice
is related to: Mouse Genome Informatics (MGI)
has parent organization: Jackson Laboratory
is parent organization of: JAX Neuroscience Mutagenesis Facility Protocols
is parent organization of: neuromice
Neurobiological disease, Neurological disorder, Sensory disorder, Behavioral disorder, Aging NIDA ;
NIMH ;
NINDS ;
NEI ;
NIA ;
NIAAA ;
NIDCD
Public, Available to the scientific community nif-0000-00784 http://nmf.jax.org/ SCR_007437 JAX Neuromutagenesis Facility, JAX - Neuroscience Mutagenesis Facilty, Neuromutagenesis Facility, Neuroscience Mutagenesis Facility of the Jackson Laboratory 2026-08-03 09:33:29 1
Sequenced Treatment Alternatives to Relieve Depression Study
 
Resource Report
Resource Website
10+ mentions
Sequenced Treatment Alternatives to Relieve Depression Study (RRID:SCR_008051) STAR*D portal, disease-related portal, clinical trial, topical portal, research forum portal, data or information resource A nationwide public health clinical trial conducted to determine the effectiveness of different treatments for people with major depression, in both primary and specialty care settings, who have not responded to initial treatment with an antidepressant. This is the largest and longest study ever done to evaluate depression treatment. The study is completed and no longer recruiting participants. Each of the four levels of the study tested a different medication or medication combination. The primary goal of each level was to determine if the treatment used during that level could adequately treat participants����?? major depressive disorder (MDD). Those who did not become symptom-free could proceed to the next level of treatment. The design of the STAR*D study reflects what is done in clinical practice because it allowed study participants to choose certain treatment strategies most acceptable to them and limited the randomization of each participant only to his/her range of acceptable treatment strategies. No prior studies have evaluated the different treatment strategies in broadly defined participant groups treated in diverse care settings. Over a seven-year period, the study enrolled 4,041 outpatients, ages 18-75 years, from 41 clinical sites around the country, which included both specialty care settings and primary medical care settings. Participants represented a broad range of ethnic and socioeconomic groups. All participants were diagnosed with MDD, were already seeking care at one of these sites, and were referred to the trial by their doctors. * STAR*D Study Medications: Citalopram (Celexa), Sertraline (Zoloft), Bupropion SR (Wellbutrin SR), Venlafaxine XR (Effexor XR), Buspirone (BuSpar), Mirtazapine (Remeron), Triiodothyronine (T3) (Cytomel), Nortriptyline (Pamelor, Aventyl), Tranylcypromine (Parnate), Lithium (Eskalith, Lithobid) *STAR*D Talk Therapy:Cognitive Therapy depressive disorder, clinical trial, major depressive disorder, adult is used by: Limited Access Datasets From NIMH Clinical Trials
is related to: NIMH Repository and Genomics Resources
has parent organization: University of Pittsburgh; Pennsylvania; USA
NIMH PMID:17074942
PMID:15061154
nif-0000-10312 http://www.star-d.org/ SCR_008051 Sequenced Treatment Alternatives to Relieve Depression (STAR*D) Study, NIMH Sequenced Treatment Alternatives to Relieve Depression (STAR*D) Study, NIMH Sequenced Treatment Alternatives to Relieve Depression Study 2026-08-03 09:33:38 12
Hippocampal Slice Wave Animations
 
Resource Report
Resource Website
Hippocampal Slice Wave Animations (RRID:SCR_008372) animation software, portal, software application, data processing software, resource, topical portal, simulation software, data or information resource, software resource, data visualization software THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 29, 2013. Supplemental data for the paper Changes in mitochondrial function resulting from synaptic activity in the rat hippocampal slice, by Vytautas P. Bindokas, Chong C. Lee, William F. Colmers, and Richard J. Miller that appears in the Journal of Neuroscience June 15, 1998. You can view digital movies of changes in fluorescence intensity by clicking on the title of interest. animation, hippocampal, hippocampus, mitochondrial, movie, neuroscience, rat, slice, wave MRC of Canada MT10520;
NIDA DA02575;
NIDA DA02121;
NIMH MH40165;
NIDDK DK42086;
NIDDK DK44840;
NINDS NS-33502;
NIGMS 5T32GM07151-22;
NICHD HD07009
PMID:9614233 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-25609 SCR_008372 GIF Animations 2026-08-03 09:34:05 0
Emergent
 
Resource Report
Resource Website
1+ mentions
Emergent (RRID:SCR_008500) Emergent software application, wiki, narrative resource, simulation software, data or information resource, software resource emergent is a comprehensive, full-featured neural network simulator that allows for the creation and analysis of complex, sophisticated models of the brain in the world. With an emphasis on qualitative analysis and teaching, it also supports the workflow of professional neural network researchers. Its high level drag-and-drop programming interface, built on top of a scripting language that has full introspective access to all aspects of networks and the software itself, allows one to write programs that seamlessly weave together the training of a network and evolution of its environment without ever typing out a line of code. Networks and all of their state variables are visually inspected in 3d, allowing for a quick visual regression of network dynamics and robot behavior. This same 3d world sports a highly accurate Newtonian physics simulation, allowing you to create rich robotics simulations (for example, a car). As a direct descendant of PDP (1986) and PDP (1999), emergent has been in development for decades. In the most recent versions available strive to distill it down to its essential elements. Those that take the time to learn the best practices will be rewarded with the ability to create and understand the most complicated neural models ever published. neural, simulator, network, analysis, software, simulation, physics, newtonian is related to: PDP++ Software Home Page
has parent organization: University of Colorado Boulder; Colorado; USA
NIMH R01 MH069597-01;
NIMH MH47566;
DARPA/ONR N00014-05-1-0880;
ONR N00014-03-1-0428
nif-0000-30515 SCR_008500 Emergent Neural Network Simulation System, PDP++ 2026-08-03 09:34:06 4

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