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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Authority Synonyms Record Last Update Mentions Count
AdaptiveCrawler
 
Resource Report
Resource Website
AdaptiveCrawler (RRID:SCR_000573) AdaptiveCrawler software resource, web application THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 9,2022. A web crawler that can intelligently acquire social media content on the Internet to meet the specific online data source acquisition needs of cancer researchers. web crawler, acquire social media content on Internet, cancer research, is listed by: OMICtools
has parent organization: Oak Ridge National Laboratory
Cancer, Breast cancer, Lung cancer PMID:24078710 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01170 SCR_000573 SciCrunch Registry Adaptive Crawler, Smart Web Crawler 2026-11-07 11:54:03 0
Wnt homepage
 
Resource Report
Resource Website
10+ mentions
Wnt homepage (RRID:SCR_000662) Wnt homepage data or information resource, portal, topical portal A resource for members of the Wnt community, providing information on progress in the field, maps on signaling pathways, and methods. The page on reagents lists many resources generously made available to and by the Wnt community. Wnt signaling is discussed in many reviews and in a recent book. There are usually several Wnt meetings per year. wnt signaling, wnt, wnt protein, wnt pathway, signaling, pathway, method, protein, reagent, bibliography has parent organization: Stanford University; Stanford; California Cancer THIS RESOURCE IS NO LONGER IN SERVICE nlx_156863 SCR_000662 SciCrunch Registry the Wnt homepage 2026-11-07 11:54:14 13
Athens Research and Technology
 
Resource Report
Resource Website
1+ mentions
Athens Research and Technology (RRID:SCR_001079) commercial organization Commercial supplier of bioproducts for studies of inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease and more. These include antibodies, enzymes, coagulation factors, and assay kits. antibody, protein, biotherapeutics, autoimmune disease, cancer, coronary disease, alzheimers disease inflammation, autoimmune disease, cancer, coronary disease, Alzheimer's Disease Wikidata: Q30284050, nlx_152285, grid.423006.3 https://ror.org/0527dhk70 SCR_001079 SciCrunch Registry Athens Research and Technology Inc. 2026-11-07 11:54:26 1
VegaMC
 
Resource Report
Resource Website
1+ mentions
VegaMC (RRID:SCR_001267) VegaMC software resource Software package that enables the detection of driver chromosomal imbalances including loss of heterozygosity (LOH) from array comparative genomic hybridization (aCGH) data. It performs a joint segmentation of a dataset and uses a statistical framework to distinguish between driver and passenger mutation. VegaMC has been implemented so that it can be immediately integrated with the output produced by PennCNV tool. In addition, it produces in output two web pages that allows a rapid navigation between both the detected regions and the altered genes. In the web page that summarizes the altered genes, the link to the respective Ensembl gene web page is reported. copy number variation, acgh, chromosomal imbalance is listed by: OMICtools
is related to: PennCNV
has parent organization: Bioconductor
Cancer PMID:22815357 Free, Available for download, Freely available OMICS_02071 SCR_001267 SciCrunch Registry VegaMC: A Package Implementing a Variational Piecewise Smooth Model for Identification of Driver Chromosomal Imbalances in Cancer 2026-11-07 11:54:19 1
Computer Integrated Systems for Microscopy and Manipulation
 
Resource Report
Resource Website
1+ mentions
Computer Integrated Systems for Microscopy and Manipulation (RRID:SCR_001413) CISMM training resource Biomedical technology research center that develops force technologies applicable over a wide range of biological settings, from the single molecule to the tissue, with integrated systems that orchestrate facile instrument control, multimodal imaging, and analysis through visualization and modeling. The Force Microscope Technologies Core designs instruments in an area of science where there are unusual opportunities: the measurement of forces and the integration with optical microscopy. Force technologies play the obvious role of both measuring events in the sample and modifying the sample during the experiment. It is through the microscope that the force data is correlated with simultaneous 3D optical images. The force technology development includes the magnetic bead technology in the 3D Force Microscope project, Atomic Force Microscopy in the nanoManipulator project, and Control Software to drive the instrumentation. This core is focused on providing the physical capability to perform the experiments and probe structure/property correlations. The Ideal User Interfaces core makes the connection between the user and the instrument, the model building, and the data. This includes control systems that allow the user to move the bead inside the cell culture with a handheld pen and the visualization techniques to view the optical microscope data as a rendered 3D image collocated with the force data. Using data to create, change, and understand a model is the focus of the Advanced Model Fitting and Analysis core. The quantitative reduction of images to structural, shape, and velocity parameters is the goal of Image Analysis. The immediate understanding of correlations across image fields and between data sets in the challenge of Visualization. The power of combining the strength of a computer science graphics group with a microscopy technology group is most evident in the Graphics Hardware Acceleration project, which seeks to harness the speed of graphics processors for microscope data analysis and simulation. The Advanced Technology core pushes the boundaries of the Human Computer Interface through the investigation of improved techniques for the interaction of users with virtual environments, the real time lighting of virtual settings, and the enabling of multi-person collaboration. These techniques are validated and evaluated through physiological measures in virtual environments effectiveness evaluation studies. microscope, visual analytics, image analysis, biomedical, bioinstrumatics, scanning electron microscope, light microscope, microscopy has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA Thrombosis, Lung disease, Cancer NIBIB 5-P41-EB002025 Freely Available nlx_152648 http://cismm.cs.unc.edu/ SCR_001413 SciCrunch Registry UNC Chapel Hill Computer Integrated Systems for Microscopy and Manipulation 2026-11-07 11:54:24 8
National Center for Integrative Biomedical Informatics
 
Resource Report
Resource Website
1+ mentions
National Center for Integrative Biomedical Informatics (RRID:SCR_001538) data or information resource, organization portal, portal The Center develops conceptual models, computational infrastructure, an integrated knowledge repository, and query and analysis tools that enable scientists to effectively access and integrate the wealth of biological data. The National Center for Integrative Biomedical Informatics (NCIBI) was founded in October 2005 and is one of seven National Centers for Biomedical Computing (NCBC) in the NIH Roadmap. NCIBI is based at the University of Michigan as a part of the Center for Computational Medicine and Biology (CCMB). NCIBI is composed of biomedical researchers, computational biologists, computer scientists, developers and human-computer interaction specialists organized into seven major core functions. They work in interdisciplinary teams to collectively develop tools that are not only computationally powerful but also biologically relevant and meaningful. The four initial Driving Biological Projects (prostate cancer progression, Type 1 and type 2 diabetes and bipolar disorder) provide the nucleation point from which tool development is informed, launched, and tested. In addition to testing tools for function, a separate team is dedicated to testing usability and user interaction that is a unique feature of this Center. Once tools are developed and validated the goal of the Center is to share and disseminate data and software throughout the research community both internally and externally. This is achieved through various mechanisms such as training videos, tutorials, and demonstrations and presentations at national and international scientific conferences. NCIBI is supported by NIH Grant # U54-DA021519. analysis tools, bipolar disorder, code, computational infrastructure, conceptual models, data, diabetes, knowledge repository, presentations, prostate cancer, query tools, seminar material, tool development, tutorials, videos, model is listed by: 3DVC
is related to: Biological Concept Diagram Editor
is related to: Gene Interaction Extraction from the Literature
is related to: National Centers for Biomedical Computing
has parent organization: University of Michigan; Ann Arbor; USA
is parent organization of: Substructure Index-based Approximate Graph Alignment
is parent organization of: miniTUBA
is parent organization of: Michigan Molecular Interactions
is parent organization of: Cell Line Knowledge Base
is parent organization of: HubMed
is parent organization of: MiMI Plugin for Cytoscape
Type 1 diabetes, Type 2 diabetes, Diabetes, Cancer, Bipolar disorder PMID:22101971 Free, Freely available nif-0000-09660 http://portal.ncibi.org/gateway/ SCR_001538 SciCrunch Registry NCIBI 2026-11-07 11:54:26 1
SamSPECTRAL
 
Resource Report
Resource Website
1+ mentions
SamSPECTRAL (RRID:SCR_001858) software resource Software that identifies cell population in flow cytometry data. It demonstrates significant advantages in proper identification of populations with non-elliptical shapes, low density populations close to dense ones, minor subpopulations of a major population and rare populations. It samples large data such that spectral clustering is possible while preserving density information in edge weights. More specifically, given a matrix of coordinates as input, SamSPECTRAL first builds the communities to sample the data points. Then, it builds a graph and after weighting the edges by conductance computation, the graph is passed to a classic spectral clustering algorithm to find the spectral clusters. The last stage of SamSPECTRAL is to combine the spectral clusters. The resulting connected components estimate biological cell populations in the data sample. software package, mac os x, unix/linux, windows, r, cell biology, clustering, flow cytometry, stem cell, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
has parent organization: Bioconductor
Cancer, HIV PMID:20667133 Free, Available for download, Freely available OMICS_05638, biotools:samspectral https://bio.tools/samspectral SCR_001858 SciCrunch Registry SamSPECTRAL - Identifies cell population in flow cytometry data 2026-11-07 11:54:27 4
QuadGT
 
Resource Report
Resource Website
1+ mentions
QuadGT (RRID:SCR_000073) QuadGT software resource Software package for calling single-nucleotide variants in four sequenced genomes comprising a normal-tumor pair and the two parents. Genotypes are inferred using a joint model of parental variant frequencies, de novo germline mutations, and somatic mutations. The model quantifies the descent-by-modification relationships between the unknown genotypes by using a set of parameters in a Bayesian inference setting. Note that you can use it on any subset of the four related genomes, including parent-offspring trios, and normal-tumor pairs without parental samples. single-nucleotide variant, sequenced genome, genotype, genome is listed by: OMICtools
has parent organization: University of Montreal; Quebec; Canada
Normal, Tumor, Cancer Canada National Sciences and Engineering Research Council ;
Canadian Institutes for Health Research ;
Terry Fox Research Institute
PMID:23734724 Free, Available for download, Freely available OMICS_02108 SCR_000073 SciCrunch Registry 2026-11-07 11:53:52 1
nFuse
 
Resource Report
Resource Website
1+ mentions
nFuse (RRID:SCR_000066) nFuse software resource Software that predicts fusion transcripts and associated CGRs from matched RNA-seq and Whole Genome Shotgun Sequencing (WGSS). cancer, genomics is listed by: OMICtools
is listed by: Google Code
has parent organization: Simon Fraser University; British Columbia; Canada
Cancer PMID:22745232 Free, Available for download, Freely available, OMICS_01353 SCR_000066 SciCrunch Registry nFuse: Discovery of Complex Genomic Rearrangements in Cancer 2026-11-07 11:53:51 2
CDP
 
Resource Report
Resource Website
10+ mentions
CDP (RRID:SCR_004236) CDP data or information resource, funding resource, portal, topical portal National program to improve the diagnosis and assessment of cancer by moving scientific knowledge into clinical practice by coordinating and funding resources and research for the development of innovative in vitro diagnostics, novel diagnostic technologies and appropriate human specimens. The Cancer Diagnosis Program is divided into four branches: Biorepository and Biospecimen Research Branch (BBRB), Diagnostic Biomarkers and Technology Branch (DBTB), Diagnostics Evaluation Branch (DEB), and the Pathology Investigation and Resources Branch (PIRB). cancer research, cancer funding, cancer research funding is listed by: OMICtools
has parent organization: DCTD
Cancer NCI Available to cancer researchers OMICS_01536 SCR_004236 SciCrunch Registry Cancer Diagnosis Program 2026-11-07 11:55:18 19
Jackson Laboratory
 
Resource Report
Resource Website
10000+ mentions
Jackson Laboratory (RRID:SCR_004633) JAX institution An independent, nonprofit organization focused on mammalian genetics research to advance human health. Their mission is to discover the genetic basis for preventing, treating, and curing human disease, and to enable research for the global biomedical community. Jackson Laboratory breeds and manages colonies of mice as resources for other research institutions and laboratories, along with providing software and techniques. Jackson Lab also conducts genetic research and provides educational material for various educational levels. genomic, disease, mouse model, human disease, biomaterial manufacture is listed by: One Mind Biospecimen Bank Listing
is affiliated with: Integrative Human Microbiome Project
is related to: ScienceExchange
is related to: Federation of International Mouse Resources
is related to: MGI strains
is related to: One Mind Biospecimen Bank Listing
is related to: Beta Cell Biology Consortium
is related to: Mouse Mutagenesis Center for Developmental Defects
is related to: GenomeMUSter
is parent organization of: Mouse Models For Alzheimer's Disease Research
is parent organization of: Type 1 Diabetes Resource
is parent organization of: MouseCyc
is parent organization of: Special Mouse Strains Resource
is parent organization of: Gene Weaver
is parent organization of: Mouse Phenome Database (MPD)
is parent organization of: Jackson Laboratory Cytogenetic Models Resource
is parent organization of: Parkinson's Disease Mouse Model Resource
is parent organization of: Eye mutant resource - The Jackson Laboratory
is parent organization of: Brainbow mouse resource at Jackson Labs
is parent organization of: Short Course on the Genetics of Addiction
is parent organization of: JAX Cre Repository
is parent organization of: Donate a strain to The Jackson Laboratory Repository
is parent organization of: Jackson Laboratory Neurobiology
is parent organization of: QTL Archive
is parent organization of: Mouse Genome Informatics: The Gene Ontology Project
is parent organization of: Mouse Genome Informatics (MGI)
is parent organization of: Mouse Tumor Biology Database
is parent organization of: Gene Expression Database
is parent organization of: The Jackson Laboratory Hearing Research Program
is parent organization of: JAX Mice: Neural Tube Defects
is parent organization of: JAX Neuroscience Mutagenesis Facility
is parent organization of: Induced Mutant Resource
is parent organization of: Mouse Mutant Resource
is parent organization of: Mouse Genome Database
is parent organization of: Mutant Mouse Resource and Research Center
is parent organization of: eMouseAtlas
is parent organization of: GBRS
is parent organization of: Jackson Laboratory Scientific Instrument Services Core Facility
provides: Knockout Mouse Project Repository
Types 1 diabetes, Type 2 diabetes, Diabetes, Cardiovascular diseases, Metabolic disease, Cancer, Rare disease, Alzheimer's disease, Demantia Available to the research community, Available to the educational community ISNI: 0000 0004 0374 0039, nlx_63162, grid.249880.f, Crossref funder ID: 100005946 https://ror.org/021sy4w91 SCR_004633 SciCrunch Registry JAX Lab, Jackson Lab 2026-11-07 11:55:17 15196
deStruct
 
Resource Report
Resource Website
1+ mentions
deStruct (RRID:SCR_004747) deStruct software resource A software tool for identifying structural variation in tumour genomes from whole genome illumina sequencing. structural variation, genome, genomics is listed by: OMICtools
has parent organization: Google Code
Tumor, Cancer Open unspecified license OMICS_00314 SCR_004747 SciCrunch Registry deStruct - Bioinformatics tool for identifying structural variation in tumour genomes 2026-11-07 11:55:36 8
Brain and Body Donation Program
 
Resource Report
Resource Website
100+ mentions
Brain and Body Donation Program (RRID:SCR_004822) BBDP biomaterial supply resource, brain bank, material resource, tissue bank THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. An autopsy-based, research-devoted brain bank, biobank and biospecimen bank that derives its human donors from the Arizona Study of Aging and Neurodegenerative Disease (AZSAND), a longitudinal clinicopathological study of the health and diseases of elderly volunteers living in Maricopa county and metropolitan Phoenix, Arizona. Their function is studied during life and their organs and tissue after death. To date, they have concentrated their studies on Alzheimer's disease, Parkinson's disease, heart disease and cancer. They share the banked tissue, biomaterials and biospecimens with qualified researchers worldwide. Registrants with suitable scientific credentials will be allowed access to a database of available tissue linked to relevant clinical information, and will allow tissue requests to be initiated., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. brain, late adult human, autopsy, mini mental state examination, neuropathological data, medical history, organ, tissue, brain, blood serum, cerebral spinal fluid, clinical, FASEB list is listed by: One Mind Biospecimen Bank Listing
has parent organization: Banner Sun Health Research Institute
Aging, Age-related disease, Alzheimer's disease, Parkinson's disease, Arthritis, Prostate cancer, Neurodegenerative disease, Cancer, Progressive supranuclear palsy, Hippocampal sclerosis, Vascular dementia, Dementia with Lewy bodies, Multiple system atrophy, Motor neuron disease, Frontotemporal lobar dementia, Corticobasal degeneration, Dementia, Cerebrovascular disease, Atherosclerosis, Renal hypertensive disease, Fatty liver, Type II diabetes Michael J. Fox Foundation for Parkinson's Research ;
Sun Health Foundation
PMID:25619230
PMID:33143239
THIS RESOURCE IS NO LONGER IN SERVICE nlx_80798 http://www.bannerhealth.com/Research/Research+Institutes/Banner+Sun+Health+Research+Institute/Research/Research+Programs/Brain+and+Body+Donation/Brain+and+Tissue+Bank.htm http://www.bannerhealth.com/Research/Research+Institutes/Banner+Sun+Health+Research+Institute/Ways+to+Give/Brain+and+Tissue/_Brain+and+Tissue.htm, http://www.bannerhealth.com/Research/Research+Institutes/Banner+Sun+Health+Research+Institute/Research/Research+Programs/Brain+and+Tissue/_Brain+and+Tissue.htm SCR_004822 SciCrunch Registry Banner Sun Health Research Institute Brain and Tissue Bank, Banner Health Brain and Tissue Bank, Brain / Body Donation Program, Banner Brain and Tissue Bank, Banner Sun Health Research Institute Brain and Body Donation Program, Brain/Body Donation Program 2026-11-07 11:55:21 121
Cliniques Universitaires Saint-Luc Cancer Centre
 
Resource Report
Resource Website
Cliniques Universitaires Saint-Luc Cancer Centre (RRID:SCR_004922) Cliniques Universitaires Saint-Luc Cancer Centre data or information resource, portal, topical portal, training resource An essential reference center in Europe and a leader in French-speaking Belgium that treats all types of adult and childhood cancer. They fight against cancer while giving patients comprehensive and humane care. Their quest for excellence is in three main academic fields: clinical care, research and teaching. cancer, adult human, child, clinical, oncology, research, young human is parent organization of: Saint-Luc Tumour Bank Cancer nlx_143961 http://www.centreducancer.be/en SCR_004922 SciCrunch Registry Centre du Cancer Cliniques Universitaires St-Luc, Cliniques Universitaires Saint-Luc Cancer Center 2026-11-07 11:55:51 0
Ivy Glioblastoma Atlas Project
 
Resource Report
Resource Website
100+ mentions
Ivy Glioblastoma Atlas Project (RRID:SCR_005044) Ivy GAP atlas, data or information resource, database, image collection Platform for exploring the anatomic and genetic basis of glioblastoma at the cellular and molecular levels that includes two interactive databases linked together by de-identified tumor specimen numbers to facilitate comparisons across data modalities: * The open public image database, here, providing in situ hybridization data mapping gene expression across the anatomic structures inherent in glioblastoma, as well as associated histological data suitable for neuropathological examination * A companion database (Ivy GAP Clinical and Genomic Database) offering detailed clinical, genomic, and expression array data sets that are designed to elucidate the pathways involved in glioblastoma development and progression. This database requires registration for access. The hope is that researchers all over the world will mine these data and identify trends, correlations, and interesting leads for further studies with significant translational and clinical outcomes. The Ivy Glioblastoma Atlas Project is a collaborative partnership between the Ben and Catherine Ivy Foundation, the Allen Institute for Brain Science and the Ben and Catherine Ivy Center for Advanced Brain Tumor Treatment. glioblastoma, in situ hybridization, hematoxylin and eosin stain, brain, tumor, gene expression, anatomic structure, histology, clinical, genomic, expression array, gene, FASEB list has parent organization: Allen Institute for Brain Science Brain cancer, Cancer Ben and Catherine Ivy Foundation nlx_99161 SCR_005044 SciCrunch Registry 2026-11-07 11:55:29 158
ABSOLUTE
 
Resource Report
Resource Website
100+ mentions
ABSOLUTE (RRID:SCR_005198) ABSOLUTE software resource Software to estimate purity / ploidy, and from that compute absolute copy-number and mutation multiplicities. When DNA is extracted from an admixed population of cancer and normal cells, the information on absolute copy number per cancer cell is lost in the mixing. The purpose of ABSOLUTE is to re-extract these data from the mixed DNA population. This process begins by generation of segmented copy number data, which is input to the ABSOLUTE algorithm together with pre-computed models of recurrent cancer karyotypes and, optionally, allelic fraction values for somatic point mutations. The output of ABSOLUTE then provides re-extracted information on the absolute cellular copy number of local DNA segments and, for point mutations, the number of mutated alleles. is listed by: OMICtools
has parent organization: Broad Institute
Cancer, Normal PMID:22544022 Account required OMICS_00217 SCR_005198 SciCrunch Registry 2026-11-07 11:55:48 283
qSNP
 
Resource Report
Resource Website
10+ mentions
qSNP (RRID:SCR_005105) qSNP software resource A single nucleotide variant caller optimised for identifying somatic variants in low cellularity cancer samples. is listed by: OMICtools
has parent organization: University of Queensland; Brisbane; Australia
Cancer PMID:24250782 OMICS_00089 SCR_005105 SciCrunch Registry 2026-11-07 11:55:31 26
KGGSeq
 
Resource Report
Resource Website
50+ mentions
KGGSeq (RRID:SCR_005311) KGGSeq software resource A biological Knowledge-based mining platform for Genomic and Genetic studies using Sequence data. The software platform, constituted of bioinformatics and statistical genetics functions, makes use of valuable biologic resources and knowledge for sequencing-based genetic mapping of variants / genes responsible for human diseases / traits. It facilitates geneticists to fish for the genetic determinants of human diseases / traits in the big sea of DNA sequences. KGGSeq has paid attention to downstream analysis of genetic mapping. The framework was implemented to filter and prioritize genetic variants from whole exome sequencing data. genomic, genetic, sequence, mutation, exome sequencing, disease, gene, variant, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
Monogenic disorder, Cancer PMID:22241780 biotools:kggseq, OMICS_02260 https://bio.tools/kggseq SCR_005311 SciCrunch Registry KGGSeq: A biological Knowledge-based mining platform for Genomic and Genetic studies using Sequence data 2026-11-07 11:55:55 58
Finnish Cancer Registry
 
Resource Report
Resource Website
1+ mentions
Finnish Cancer Registry (RRID:SCR_005881) Finnish Cancer Registry institution The Finnish Cancer Registry maintains a nation-wide database on all cancer cases in Finland going back to 1953. It is also an internationally active institute for statistical and epidemiological cancer research. The Mass Screening Registry is a department of the Finnish Cancer Registry, and is responsible of planning and evaluating national cancer screening programs in Finland. The site contains information on cancer research and up to date statistics on the prevalence of different types of cancer in Finland, the Nordic countries and on a global level. The web pages include information for participants in cancer screening and for professionals involved in organizing such screening. Cancer Cancer Society of Finland grid.424339.b, nlx_149446, ISNI: 0000 0000 8634 0612 https://ror.org/00j15sg62 SCR_005881 SciCrunch Registry 2026-11-07 11:55:45 8
SPLINTER
 
Resource Report
Resource Website
10+ mentions
SPLINTER (RRID:SCR_005826) SPLINTER software resource Software that detects and quantifies short IN/DELs as well as single nucleotide substitutions in pooled-DNA samples. is listed by: OMICtools
has parent organization: Washington University in St. Louis; Missouri; USA
Cancer Free for academic / non-profit use, Commercial use requires license OMICS_00100 SCR_005826 SciCrunch Registry Short IN/DEL Prediction by Large deviation Inference and Non-linear True frequency Estimation by Recursion 2026-11-07 11:55:43 13

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