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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Allen Mouse Brain ImageLoader Resource Report Resource Website |
Allen Mouse Brain ImageLoader (RRID:SCR_023827) | software resource | Respository contains two small software tools which render annotation and images of the Allen Mouse Brain Atlas. Both tools generate 1304 images of the Mouse Brain (456 sagital, 528 coronal and 320 axial). | Allen Mouse Brain Atlas, render annotation and images, mouse brain images, mouse brain images generation, | is related to: Allen Institute for Brain Science | Free, Available for download, Freely available | SCR_023827 | 2025-04-19 06:52:55 | 0 | ||||||||||
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BICCN Cell Registry Resource Report Resource Website 10+ mentions |
BICCN Cell Registry (RRID:SCR_017267) | data or information resource | Searchable table of datasets. Data generated from projects through BRAIN Initiative Cell Census Network. Datasets can be filtered by species, research investigator, grant number or experimental technique. Includes links to data directories at data archives and links to protocols. | data, dataset, brain, initiative, cell, registry |
is related to: BRAIN Cell Data Center is related to: BRAIN Cell Data Center has parent organization: Allen Institute for Brain Science is provided by: BICCN |
NIH | Free, Freely available, Available for download | http://www.brainimagelibrary.org/download.html https://nemoarchive.org/resources/data-download.php |
SCR_017267 | BRAIN Initiative Cell Census Network Cell Registry, BICCN Cell Registry | 2025-04-19 06:48:31 | 10 | |||||||
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Allen Mouse Reference Atlas Ontology Resource Report Resource Website 1+ mentions |
Allen Mouse Reference Atlas Ontology (RRID:SCR_021000) | data or information resource, controlled vocabulary, ontology | Developed for Allen Reference Atlas and follows terminology from Brain Maps: Structure for the Rat Brain (Swanson, 2004, 2018). The ontology has been subsequently extended and revised to also serve as structure ontology for Allen Mouse Common Coordinate Framework.Defines hierarchical partonomy of anatomical structures of adult mouse brain. At top level, brain is divided into gray matter, fiber tracts and ventricular systems. Gray matter is subdivided into cerebrum, brain stem, and cerebellum, which are themselves organized into subregions in hierarchical tree. | structure ontology, brain structure, ontology, hierarchical partonomy, anatomical structures |
is used by: Allen Mouse Brain Common Coordinate Framework is used by: Early Postnatal Developmental Mouse Brain Atlas has parent organization: Allen Institute for Brain Science |
PMID:32386544 | Free, Freely available | SCR_021000 | 2025-05-05 11:17:45 | 5 | |||||||||
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BRAIN Initiative Cell Atlas Network Resource Report Resource Website 10+ mentions |
BRAIN Initiative Cell Atlas Network (RRID:SCR_022794) | BICAN | data or information resource, portal | Provides molecular and anatomical foundational framework for study of brain function and disorders.Comprehensive Center on Human and Non-Human Primate Brain Cell Atlases with goal to build reference brain cell atlases that will be used throughout research community. | Cell Atlas Network, study of brain function and disorders, build reference brain cell atlases |
uses: NIH NeuroBioBank uses: NeMOarchive uses: Terra uses: Brain Image Library uses: SpinalJ uses: Cell Annotation Platform uses: Connectome Workbench uses: BALSA uses: Cytosplore Viewer uses: Annotation Comparison Explorer uses: Cellarium is related to: BICCN is related to: JOSA is related to: Brain Cell Data Viewer is related to: CZ CELLxGENE Discover is related to: CATlas is related to: Epi-Retro-Seq is related to: NeMO Analytics has parent organization: Allen Institute has parent organization: Allen Institute for Brain Science has organization facet: Slide-seq Pipeline has organization facet: ATAC Pipeline has organization facet: Multiome Pipeline has organization facet: MapMyCells has organization facet: Whole Mouse Brain Cell and Genome Atlas has organization facet: snM3C Pipeline has organization facet: Paired-Tag Pipeline has organization facet: NIMP: Neuroanatomy-anchored Information Management Platform for Collaborative BICAN Data Generation has organization facet: NHash Identifier has organization facet: Atlas Ontology Model has organization facet: Allen Brain Map BICCN Data Catalog has organization facet: Atlas Ontology Model |
NIH MH130968; NIH MH130918 |
Free, Freely available | https://www.braininitiative.org/funding-opportunity/brain-initiative-cell-atlas-network-bican-comprehensive-center-on-human-and-non-human-primate-brain-cell-atlases-um1-clinical-trial-not-allowed/ https://braininitiative.nih.gov/funding-opportunies/brain-initiative-cell-atlas-network-bican-specialized-collaboratory-human-non |
SCR_022794 | 2025-05-06 11:16:03 | 16 | |||||||
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Brain heatmap Resource Report Resource Website 10+ mentions |
Brain heatmap (RRID:SCR_023815) | data or information resource, portal, project portal | Custom Brain Heatmaps on top of the Allen Brain Atlas. Platform to generate brain heatmaps for the human or mouse brain ontop of the Allen Brain Atlas by editing google spreadsheet template with specific brain region and gene information. | Allen Mouse Brain Reference Atlas, Human Brain Reference Atlas, | is related to: Allen Institute for Brain Science | Free, Freely available | https://github.com/LiorKirsch/brain-heatmap-web https://github.com/LiorKirsch/brain-heatmap |
SCR_023815 | 2025-05-06 11:16:32 | 32 | |||||||||
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Multimodal Environment for Neuroimaging and Genomic Analysis Resource Report Resource Website 1+ mentions |
Multimodal Environment for Neuroimaging and Genomic Analysis (RRID:SCR_023822) | MENGA | data or information resource, portal, project portal | Software platform for integration of imaging data and Allen Human Brain Atlas mRNA data. MENGA investigates correlation patterns between various imaging modalities and gene expression profiles based on the Allen Brain Atlas in order to create comprehensive, integrated data platform. | Allen Human Brain Atlas, imaging data, Allen Human Brain Atlas mRNA data, data integration, | is related to: Allen Institute for Brain Science | PMID:26882227 | Free, Freely available | SCR_023822 | MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis | 2025-05-06 11:16:33 | 1 | |||||||
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Single Cell Portal Resource Report Resource Website 100+ mentions |
Single Cell Portal (RRID:SCR_014816) | SCP | data or information resource, portal | Portal specializes in visualizing and disseminating single cell data. Allows you to use natural language and faceted search to discover other scientists’ research and share your own findings. Each study includes information on cell types, singular or multiple gene expression, and spatial transcriptomics. Interactive visualizations allow to explore cell clusters and search for related genes. | Single cell data visualization, disseminating single cell data, single cell data, brain, RNA, rna seq, multiple gene expression, spatial transcriptomics, open science |
is used by: BRAIN Initiative is used by: BICCN is related to: BICCN Anatomy and Morphology Project is related to: Allen Institute for Brain Science has parent organization: Broad Institute has organization facet: Terra |
Free, Available for download, Freely available | https://portals.broadinstitute.org/single_cell?utf8=✓&search_terms=e+coli&order=&commit= | SCR_014816 | Single-Cell RNA-Seq Portal for Brain Research | 2025-05-06 11:10:27 | 178 | |||||||
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Blue Brain Cell Atlas Resource Report Resource Website 1+ mentions |
Blue Brain Cell Atlas (RRID:SCR_019266) | data or information resource, atlas | Describes number, types, and positions of cells in all areas of mouse brain. Provides densities and positions of all excitatory, inhibitory and neuromodulatory neurons, as well as astrocytes, oligodendrocytes and microglia in each of brain regions defined in Allen Mouse Brain Atlas. Users can download cell numbers for statistical analysis, cell positions and types for modeling and visualizing brain areas. Underlying workflow uses imaging data from Allen Institute Common Coordinate Framework to generate cell positions and assign their type using API for data access. | Cell number, cell type, cell position, brain area, mouse brain, neuromodulatory neurons, astrocytes, oligodendrocytes, microglia, imaging data, Allen Institute Common Coordinate Framework |
is used by: BICCN is related to: Allen Mouse Brain Reference Atlas is related to: Allen Institute for Brain Science is provided by: Blue Brain Project |
Free, Freely available | SCR_019266 | The Blue Brain Cell Atlas | 2025-05-06 11:14:18 | 7 | |||||||||
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Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas Resource Report Resource Website 1+ mentions |
Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas (RRID:SCR_019267) | data or information resource, atlas | Website to visualize and share anatomical labels. Franklin and Paxinos (FP) based anatomical labels in Allen Common Coordinate Framework (CCF). Cell type specific transgenic mice and MRI atlas were used to adjust and further segment labels. New segmentations were created in dorsal striatum using cortico-striatal connectivity data. Anatomical labels were digitized based on Allen ontology, and web-interface was created for easy visualization. These labels provide resource to isolate and identify mouse brain anatomical structures. Open source data sharing will facilitate further refinement of anatomical labels and integration of data interpretation within single anatomical platform. | Anatomical labels, Allen Common Coordinate Framework, Franklin and Paxinos labels, MRI atlas, segment labels, transgenic mice, dorsal striatum, cortico-striatal connectivity data, mouse brain anatomical structure |
is used by: BICCN is related to: Allen Institute for Brain Science |
NIMH R01 MH116176; NINDS R01 NS10 8407; Pennsylvania Department of Health ; NIH Office of the Director R24 OD018559 |
PMID:31699990 | Free, Freely available | SCR_019267 | 2025-05-06 11:14:18 | 1 | ||||||||
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Seattle Alzheimer Disease Brain Cell Atlas Resource Report Resource Website 1+ mentions |
Seattle Alzheimer Disease Brain Cell Atlas (RRID:SCR_023110) | SEA-AD | data or information resource, atlas | Open atlas based on single cell profiling technologies with quantitative neuropathology and deep clinical phenotyping from middle temporal gyrus from neurotypical reference brains and brains from SEA-AD aged cohort that span spectrum of Alzheimer’s disease. Produced via collaboration between Allen Institute for Brain Science, University of Washington Alzheimer Disease Research Center and Kaiser Permanente Washington Health Research Institute. | Alzheimer’s disease, single cell profiling, quantitative neuropathology, deep clinical phenotyping, middle temporal gyrus, neurotypical reference brains, SEA-AD aged cohort brains, |
is related to: BRAIN Initiative is related to: Allen Institute for Brain Science is related to: University of Washington; Seattle; USA |
Alzheimer’s disease | NIA U19AG060909 | Free, Freely available | SCR_023110 | 2025-05-06 11:16:12 | 5 | |||||||
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Integrated Brain Gene Expression Resource Report Resource Website |
Integrated Brain Gene Expression (RRID:SCR_004197) | data or information resource, database | Virtual database indexing brain region gene expression data from mice from: Gene Expression Nervous System Atlas (GENSAT), Allen Mouse Brain Atlas, and Mouse Genome Institute (MGI). | database, brain gene expression, molecular neuroanatomy resource, brain, gene expression, mouse, gene |
is used by: NIF Data Federation is related to: Gene Expression Nervous System Atlas is related to: Allen Mouse Brain Reference Atlas is related to: Mouse Genome Informatics (MGI) is related to: Allen Institute for Brain Science has parent organization: Integrated |
Restricted | nlx_22354 | https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-4 http://neuinfo.org/nif/nifgwt.html?query=nlx_22354, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_22354-1, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-4 | SCR_004197 | NIF Integrated Brain Gene Expression View, NIF Integrated Brain Gene Expression, Integrated BGE, Integrated Brain Gene Expression View, NIF Brain Gene Expression, Brain Gene Expression | 2025-05-06 11:02:23 | 0 | |||||||
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Brain Architecture Project Resource Report Resource Website 10+ mentions |
Brain Architecture Project (RRID:SCR_004283) | data or information resource, portal, topical portal | Evolving portal that will provide interactive tools and resources to allow researchers, clinicians, and students to discover, analyze, and visualize what is known about the brain's organization, and what the evidence is for that knowledge. This project has a current experimental focus: creating the first brainwide mesoscopic connectivity diagram in the mouse. Related efforts for the human brain currently focus on literature mining and an Online Brain Atlas Reconciliation Tool. The primary goal of the Brain Architecture Project is to assemble available knowledge about the structure of the nervous system, with an ultimate emphasis on the human CNS. Such information is currently scattered in research articles, textbooks, electronic databases and datasets, and even as samples on laboratory shelves. Pooling the knowledge across these heterogeneous materials - even simply getting to know what we know - is a complex challenge that requires an interdisciplinary approach and the contributions and support of the greater community. Their approach can be divided into 4 major thrusts: * Literature Curation and Text Mining * Computational Analysis * Resource Development * Experimental Efforts | central nervous system, connectivity, mapping, model, neuroanatomy, organism, post-mortem, structure, nervous system, structure, human, mouse, brain, zebra finch, addiction gene, addiction |
is used by: BICCN lists: Allen Institute for Brain Science lists: University of California at Los Angeles; California; USA is related to: Mouse Brain Architecture Project is related to: BICCN Anatomy and Morphology Project is related to: Allen Institute for Brain Science has parent organization: Cold Spring Harbor Laboratory is parent organization of: Human Brain Connectivity Database is parent organization of: OBART is parent organization of: Zebrafinch Brain Architecture Project is parent organization of: Mouse Brain Architecture Project |
W. M. Keck Foundation ; NIMH ; NIDA ; Crick-Clay Professorship in Biomathematics at CSHL ; Mathers Foundation ; Simons Foundation |
Free, Public | nlx_143664 | SCR_004283 | BrainArchitecture.org, BrainArchitecture | 2025-05-07 11:48:57 | 13 | |||||||
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Linked Neuron Data Resource Report Resource Website |
Linked Neuron Data (RRID:SCR_003658) | LND | data or information resource, data set | Neuroscience data and knowledge from multiple scales and multiple data sources that has been extracted, linked, and organized to support comprehensive understanding of the brain. The core is the CAS Brain Knowledge base, a very large scale brain knowledge base based on automatic knowledge extraction and integration from various data and knowledge sources. The LND platform provides services for neuron data and knowledge extraction, representation, integration, visualization, semantic search and reasoning over the linked neuron data. Currently, LND extracts and integrates semantic data and knowledge from the following resources: PubMed, INCF-CUMBO, Allen Reference Atlas, NIF, NeuroLex, MeSH, DBPedia/Wikipedia, etc. | neuron, brain, neuroscience, protein, gene, neurotransmitter |
is related to: Common Upper Mammalian Brain Ontology is related to: Neuroscience Information Framework is related to: PubMed is related to: NeuroLex is related to: MeSH is related to: DBpedia is related to: Allen Mouse Brain Reference Atlas is related to: Allen Institute for Brain Science has parent organization: Chinese Academy of Sciences; Beijing; China |
nlx_157812 | SCR_003658 | Linked Neuron Data (LND) | 2025-05-06 11:01:48 | 0 | ||||||||
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Microns Explorer Resource Report Resource Website 10+ mentions |
Microns Explorer (RRID:SCR_021678) | data or information resource, portal, topical portal | Portal to release connectivity and functional imaging data collected by consortium of laboratories led by groups at Allen Institute for Brain Science, Princeton University, and Baylor College of Medicine, with support from broad array of teams, coordinated and funded by IARPA MICrONS program. Data include large scale electron microscopy based reconstructions of cortical circuitry from mouse visual cortex, with corresponding functional imaging data from those same neurons. | Connectome, mouse, cortex, electron microscopy, functional imaging data, cortical circuitry reconstruction, neuron |
is related to: Allen Institute for Brain Science is related to: Princeton University; New Jersey; USA is related to: Baylor College of Medicine; Houston; Texas |
IARPA MICrONS | Free, Freely available | SCR_021678 | MICrONS Explorer | 2025-05-07 11:59:49 | 10 | ||||||||
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Allen Developing Mouse Brain Atlas Resource Report Resource Website 100+ mentions |
Allen Developing Mouse Brain Atlas (RRID:SCR_002990) | data or information resource, database, reference atlas, expression atlas, atlas | Map of gene expression in developing mouse brain revealing gene expression patterns from embryonic through postnatal stages. Provides information about spatial and temporal regulation of gene expression with database. Feature include seven sagittal reference atlases created with a developmental ontology. These anatomic atlases may be viewed alongside in situ hybridization (ISH) data as well as by itself. | gene, expression, developing, mouse, brain, pattern, embryonic, postnatal, stage, data, database, reference, atlas, ontology, anatomy, ISH |
is related to: Allen Brain Atlas API is related to: Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain) has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas |
PMID:22832508 | Free, Public | nif-0000-00509 | SCR_002990 | Allen Brain Atlas Developing Mouse Brain | 2025-05-08 10:55:53 | 184 | |||||||
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National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) Resource Report Resource Website 10+ mentions |
National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) (RRID:SCR_007314) | NIAGADS | storage service resource, data set, data or information resource, service resource, database, data repository | National genetics data repository facilitating access to genotypic and phenotypic data for Alzheimer's disease (AD). Data include GWAS, whole genome (WGS) and whole exome (WES), expression, RNA Seq, and CHIP Seq analyses. Data for the Alzheimer’s Disease Sequencing Project (ADSP) are available through a partnership with dbGaP (ADSP at dbGaP). Repository for many types of data generated from NIA supported grants and/or NIA funded biological samples. Data are deposited at NIAGADS or NIA-approved sites. Genetic Data and associated Phenotypic Data are available to qualified investigators in scientific community for secondary analysis. | genetics, alzheimer's disease, genome-wide association study, neurodegenerative disease, genotype, phenotype, late adult human, dna marker, dna sequencing, rna expression, rna, dna, gene |
is recommended by: National Library of Medicine is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: NIH Data Sharing Repositories is related to: Allen Institute for Brain Science has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA |
Alzheimer's disease, Late-onset Alzheimer's disease, Aging | NIH Blueprint for Neuroscience Research ; NIA U24 AG041689; NIA 3U24AG041689 |
nif-0000-00179 | http://www.nitrc.org/projects/niagads http://alois.med.upenn.edu/niagads/ | SCR_007314 | National Institute on Aging, NIA Genetics of Alzheimer's Disease Data Storage Site, Genetics of Alzheimer’s Disease Data Storage Site | 2025-05-08 10:58:40 | 49 | |||||
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Allen Human Brain Atlas Resource Report Resource Website 100+ mentions |
Allen Human Brain Atlas (RRID:SCR_007416) | software application, data processing software, data or information resource, database, data visualization software, atlas, software resource | Multi modal atlas of human brain that integrates anatomic and genomic information, coupled with suite of visualization and mining tools to create open public resource for brain researchers and other scientists. Data include magnetic resonance imaging (MRI), diffusion tensor imaging (DTI), histology and gene expression data derived from both microarray and in situ hybridization (ISH) approaches. Brain Explorer 2 is desktop software application for viewing human brain anatomy and gene expression data in 3D. | atlas, human, brain, anatomic, genomic, data, visualization, mining, tool, MRI, DTI, histology, gene, expression |
is related to: Speech Language Disorders Database has parent organization: Allen Institute for Brain Science has parent organization: Allen Brain Atlas |
Individual private donors ; U.S. Department of Health and Human Services 1C76HF15069; U.S. Department of Health and Human Services 1C76HF19619 |
PMID:23041053 | Free, Available for download, Freely available | nif-0000-00506 | http://humancortex.alleninstitute.org, http://human.brain-map.org/ | SCR_007416 | Human Cortex Study, Allen Institute for Brain Science Human Cortex Study, Allen Brain Atlas - Human Brain | 2025-05-08 10:58:48 | 128 | |||||
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Allen Brain Atlas API Resource Report Resource Website 10+ mentions |
Allen Brain Atlas API (RRID:SCR_005984) | Allen Brain Atlas API | portal, source code, software application, data or information resource, topical portal, software resource | API and demo application for accessing the Allen Brain Atlas Mouse Brain data. Data available via the API includes download high resolution images, expression data from a 3D volume, 3D coordinates of the Allen Reference Atlas, and searching genes with similar gene expression profiles using NeuroBlast. Data made available includes: * High resolution images for gene expression, connectivity, and histology experiments, as well as annotated atlas images * 3-D expression summaries registered to a reference space for the Mouse Brain and Developing Mouse Brain * Primary microarray results for the Human Brain and Non-Human Primate * RNA sequencing results for the Developing Human Brain * MRI and DTI files for Human Brain The API consists of the following resources: * RESTful model access * Image download service * 3-D expression summary download service * Differential expression search services * NeuroBlast correlative searches * Image-to-image synchronization service * Structure graph download service | atlas application, expression data, 3d volume, 3d coordinate, gene, reference atlas, connectivity, histology, microarray, brain, rna sequencing, mri, dti, api, computational neuroscience, mouse brain, neuroanatomy, neuroimaging, neuroinformatics, ish, high resolution image, nissl, annotation, atlas, image, web service, neuroblast, gene expression, gene, computational neuroscience, mouse brain, neuroanatomy, neuroimaging, neuroinformatics |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Allen Mouse Brain Reference Atlas is related to: Allen Developing Mouse Brain Atlas is related to: International Neuroinformatics Coordinating Facility is related to: Brain Explorer Atlas and Teaching Tool is related to: CellTax vignette is related to: Allen Mouse Brain Common Coordinate Framework has parent organization: Allen Institute for Brain Science |
Other/Commercial license License | nlx_151358 | http://www.nitrc.org/projects/incf_allen-brai | SCR_005984 | 2025-05-08 10:57:40 | 13 | |||||||
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NIH Blueprint NHP Atlas Resource Report Resource Website 10+ mentions |
NIH Blueprint NHP Atlas (RRID:SCR_010559) | NHP Atlas | data or information resource, database, reference atlas, expression atlas, atlas | Atlas of gene expression in the developing rhesus macaque brain. This atlas is a free online resource with a unique set of data and tools aimed to create a developmental neuroanatomical framework for exploring the cellular and molecular architecture of the developing postnatal primate brain with direct relevance for human brain development. The atlas includes: * Microarray ** Microdissection: Fine structure transcriptional profiling across postnatal development for fine nuclear subdivisions of the prefrontal cortex, primary visual cortex, hippocampus, amygdala and ventral striatum ** Macrodissection: Gross structure transcriptional profiling across postnatal development for the same structures * ISH: ** Cellular resolution in situ hybridization image data of five major brain regions during postnatal developmental periods for genes clinically important for a variety of human neurodevelopmental disorders, including prefrontal cortex, primary visual cortex, hippocampus, amygdala and ventral striatum. ** Serial analysis of selected genes across the entire adult brain, focusing on cellular marker genes, genes with cortical area specificity and gene families important to neural function. * ISH Anatomic Search: Detailed gene expression search on the ISH data based on expert annotation * Reference Data: Developmental stage-specific reference series, consisting of magnetic resonance imaging (MRI) and Nissl histology to provide a neuroanatomical context for the gene expression data. These data and tools are designed to provide a valuable public resource for researchers and educators to explore neurodevelopment in non-human primates, and a key evolutionary link between other Web-based gene expression atlases for adult and developing mouse and human brain. | molecular neuroanatomy resource, developing brain, development, brain, gene expression, postnatal, mrna transcript, in situ hybridization, prefrontal cortex, primary visual cortex, hippocampus, amygdala, ventral striatum, dna microarray, magnetic resonance imaging, nissl, histology, brain development, developmental stage, microdissection, macrodissection, microarray, cell density, neuroanatomy, non-human primate |
is related to: Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain) has parent organization: Allen Institute for Brain Science |
Neurodevelopmental disorder | NIH Blueprint for Neuroscience Research ; NIMH contract HHSN-271-2008-0047 |
Free | nlx_37895 | SCR_010559 | NIH Blueprint Non-Human Primate Atlas | 2025-05-08 10:59:26 | 23 | |||||
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BICCN Resource Report Resource Website 100+ mentions |
BICCN (RRID:SCR_015820) | BICCN | consortium, data or information resource, portal, organization portal | Consortium for the cell census in the brain. Integrated network of data generating centers, data archives, and data standards developers, with the goal of systematic multimodal brain cell type profiling and characterization. Emphasis of the BICCN is on the whole mouse brain with demonstration of prototype feasibility for human and nonhuman primate brains. | cell census, neuroscience, brain, brain initiative cell census network, whole mouse brain, |
uses: QuickNII uses: HistoloZee uses: CellLocator uses: Semi-Manual Alignment to Reference Templates uses: LoomPy uses: Cytosplore Viewer uses: Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain) uses: Blue Brain Cell Atlas uses: Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas uses: Hippocampome.org uses: Neuron Phenotype Ontology uses: Brain Image Library uses: Distributed Archives for Neurophysiology Data Integration uses: NeuroMorpho.Org uses: Azimuth uses: Brain Observatory Storage Service and Database (BossDB) uses: Optimus Pipeline uses: scATAC Pipeline uses: Smart-seq2 Single Nucleus Multi Sample Pipeline uses: CEMBA MethylC Seq Pipeline uses: Brain Architecture Project uses: Single Cell Portal uses: MorphoHub uses: Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas uses: Mouse Connectome Project uses: Allen Mouse Brain Reference Atlas uses: Allen Mouse Brain Common Coordinate Framework uses: Allen Human Reference Atlas, 3D, 2020 uses: NeMO Analytics uses: ANTS - Advanced Normalization ToolS uses: CloudReg uses: Brainome portal uses: CATlas uses: MetaNeighbor uses: Cell Annotation Platform uses: cellxgene uses: Neuroglancer uses: Vaa3D uses: QuickNII and VisuAlign uses: Hi5App uses: CloudVolume uses: neuroXiv uses: Brain Data Standards Ontology uses: Pittsburgh Supercomputing Center uses: Molecular Biosensor and Imaging Center uses: Generative Diffeomorphic Mapping uses: NIH NeuroBioBank uses: NeMOarchive lists: ccf_streamlines is related to: Mouse Connectome Project is related to: BarensLab Mini-Atlas is related to: Cumulus is related to: Pegasus is related to: Cirrocumulus is related to: Gene functional conservation across cell types and species is related to: BRAIN Initiative Cell Atlas Network is related to: ATAC Pipeline is related to: Slide-seq Pipeline has parent organization: Allen Institute has parent organization: Allen Institute for Brain Science provides: mBrainAligner provides: BICCN Cell Registry provides: Cell Type Knowledge Explorer provides: Epiviz has organization facet: BICCN Anatomy and Morphology Project has organization facet: Cell Type Knowledge Explorer has organization facet: mBrainAligner has organization facet: Terra has organization facet: Allen Brain Cell Atlas has organization facet: Multiome Pipeline has organization facet: Allen Software Development Kit has organization facet: BICCN Imaging and analysis Techniques to Construct Cell Census Atlas of Human Brain has organization facet: Allen Brain Map BICCN Data Catalog has organization facet: snM3C Pipeline has organization facet: Paired-Tag Pipeline |
NIMH U19 MH114821; NIMH U19 MH114830; NIMH U19 MH114831 |
PMID:37390046 | Restricted | SCR_017266 | SCR_015820 | BICCN 2.0, BRAIN Initiative Cell Census Network, BRAIN Initiative Cell Census Network (BICCN) | 2025-05-08 11:01:29 | 212 |
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