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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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An Open-Source MATLAB-to-Python Compiler Resource Report Resource Website 1+ mentions |
An Open-Source MATLAB-to-Python Compiler (RRID:SCR_008409) | compiler, software application, software development tool, software resource | OMPC aims to enable reuse of the huge open and free code base of MATLAB on a free and faster growing Python platform. Running Python and MATLAB in a single interpreter avoids issues with running two separate applications. Python adds general purpose programming libraries to the convenient syntax of the language of technical computing. OMPC is not an interpreter, it lets Python to do the work. This means that if Python gets faster OMPC gets faster too. OMPC translates the m-files preserving the structure of the original programs as much as possible. Although OMPC comes with a library that emulates the features of numerical array of MATLAB there is nothing that will stop you from running the translated code the way you like it. This means that you could run the OMPC generated code on IronPython, Jython, PyPy or whatever else if you write your own numerical class. Sponsors: This resource is supported by RIKEN Brain Science Institute. | code, compiler, python, matlab, computng, software, program |
is related to: Python Programming Language is related to: MATLAB |
nif-0000-30104 | SCR_008409 | SciCrunch Registry | OMPC | 2026-10-31 12:14:52 | 2 | |||||||||
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CoSMoMVPA Resource Report Resource Website 100+ mentions |
CoSMoMVPA (RRID:SCR_014519) | data analysis software, data processing software, software application, software resource, software toolkit | A multi-modal multivariate pattern analysis of neuroimaging data in Matlab / GNU Octave. Links to examples, exercises, and information for developers are available on the main page. | functional magnetic resonance imaging, magnetoencephalography, multivariate pattern analysis, neuroscience, weill cornell, software toolkit, data analysis software |
is related to: PyMVPA works with: MATLAB works with: GNU Octave works with: FieldTrip |
Autonomous Province of Trento ; Call Grandi Progetti 2012 ; project Characterizing and improving brain mechanisms of attention - ATTEND |
DOI:10.1101/047118 | Available for download | https://github.com/CoSMoMVPA/CoSMoMVPA | SCR_014519 | SciCrunch Registry | 2026-10-31 12:16:19 | 193 | |||||||
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BVA import/export EEGLAB plugin Resource Report Resource Website 1+ mentions |
BVA import/export EEGLAB plugin (RRID:SCR_016333) | bva-io | software application, software resource, software toolkit | Software package for interfacing the Brain Vision Analyser data files (load/save) for ongoing development of Matlab routines . This package is also compatible with the EEGLAB software, and may be uncompressed in the plugin folder of this software. | interfacing, brain, vision, analyser, data, file, load, save, Matlab, routine, compatible, EEGLAB |
is related to: SourceForge is related to: EEGLAB is related to: MATLAB |
Free, Available for download, Freely available | SCR_016333 | SciCrunch Registry | Brain Vision Analyser | 2026-10-31 12:21:33 | 4 | ||||||||
|
PreSurgMapp Resource Report Resource Website 1+ mentions |
PreSurgMapp (RRID:SCR_014427) | software resource, software toolkit | A MATLAB toolbox for processing the functional areas of the brain using multi-modal fMRI data for pre-surgical mapping. It is composed of three types of individual-level ICA analyses for user use. Traditional ICA (task) can be used for task fMRI. Either Traditional ICA (rest) or ICA with DICI (rest) can be used for rs-fMRI. Traditional ICA (rest) is designed for users who already have a hypothesis of the pattern of the target component and want to have manually set components by themselves. ICA with DICI (rest) is completely automatic, given that the user provides a template (provided). The software utilizes an automatic component identification method that is based on the discriminatory-index. All the components from multiple ICA runs with multiple component settings are ranked and compiled. | fmri, ica, dici, rs-fmri, dici, matlab, software toolkit, toolbox, multi modal, pre surgical, map | uses: MATLAB | Open source | http://restfmri.net/forum/node/2382. | SCR_014427 | SciCrunch Registry | 2026-10-31 12:21:28 | 4 | |||||||||
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Letswave Resource Report Resource Website 10+ mentions |
Letswave (RRID:SCR_016414) | data processing software, data visualization software, software application, software resource, software toolkit | Open source electroencephalogram (EEG) signal processing toolbox to process and visualise EEG/MEG data and other neurophysiological signals. | process, visualise, EEG, MEG, data, neurophysiological, signal, brain, neuroscience | is related to: MATLAB | Free, Available for download, Freely available | https://www.letswave.org/ | SCR_016414 | SciCrunch Registry | 2026-10-31 12:18:32 | 27 | |||||||||
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Brainstorm Resource Report Resource Website 500+ mentions |
Brainstorm (RRID:SCR_001761) | Brainstorm | data analysis software, data processing software, data visualization software, software application, software resource | Software as collaborative, open source application dedicated to analysis of brain recordings: MEG, EEG, fNIRS, ECoG, depth electrodes and animal invasive neurophysiology. User-Friendly Application for MEG/EEG Analysis. | MEG, EEG, data, magnetoencephalography, electroencephalography, visualization, processing, analysis, brain, recording, fNIRS, ECoG, electrophysiology |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: OpenMEEG is related to: Open MEG Archive is related to: MATLAB has parent organization: University of Southern California; Los Angeles; USA |
CNRS ; McGill University ; NIBIB R01 EB000473; NIBIB R01 EB002010; NIBIB R01 EB009048; NIBIB R01 EB026299 |
PMID:21584256 | Free, Available for download, Freely available | nif-0000-10267 | http://www.nitrc.org/projects/bst, https://github.com/brainstorm-tools/brainstorm3 | SCR_001761 | SciCrunch Registry | brainstorm3 | 2026-10-31 12:12:56 | 622 | ||||
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Automatic Analysis Resource Report Resource Website 1+ mentions |
Automatic Analysis (RRID:SCR_003560) | aa | data analysis software, data processing software, image analysis software, image processing software, software application, software resource, software toolkit, time-series analysis software, workflow software | Integration framework for major open source packages in neuroimaging including SPM, FSL, FreeSurfer, EEGLAB, and Fieldtrip. Efficient neuroimaging workflows and parallel processing using Matlab and XML. Addresses challenges of processing multimodal datasets, like combining anatomy, functional MRI, diffusion, and EEG, to yield integrated views of brain. Allows to design, execute, and share pipelines utilizing multiple open source packages. Supports parallelized execution to address challenges of large cohort studies and provides quality control offering group statistics and reporting facilities to help identify outlier subjects and erroneous processing steps. | Neuroimaging workflows, processing multimodal datasets, brain integrated views, fmri, eeg, meg, dwi, morphometry, parallel-processing, scripting, record-keeping, |
uses: FreeSurfer uses: MATLAB uses: SPM |
NIA R01 AG038490; NIDCD R01 DC013063; NSERC Discovery and the Canada Excellence Research Chair (CERC) in Cognitive Neuroimaging ; NSERC/CIHR CHRP |
PMID:25642185 | nlx_157695 | SCR_003560 | SciCrunch Registry | automaticanalysis, AutomaticAnalysis | 2026-10-31 12:13:28 | 8 |
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