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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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University of Kansas Medical Center; Kansas; USA Resource Report Resource Website 1+ mentions |
University of Kansas Medical Center; Kansas; USA (RRID:SCR_014051) | A public health center and research institution affiliated with the University Kansas. |
is related to: University of Kansas Medical Center Pharmacology is related to: Clinical and Translational Science Awards Consortium has parent organization: University of Kansas; Kansas; USA is parent organization of: ePRISM is parent organization of: University of Kansas Medical Center Mass Spectrometry and Proteomics Core Facility |
SCR_014051 | KU Medical Center, University of Kansas Medical Center | 2026-08-08 12:00:04 | 4 | ||||||||||||
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Vienna Drosophila Resource Center Resource Report Resource Website 100+ mentions |
Vienna Drosophila Resource Center (RRID:SCR_013805) | VDRC | biomaterial supply resource, material resource | Biomaterial supply resource which collects, maintains, and distributes independent transgenic fly lines. Most of the 38,000 fly lines are RNAi lines, but VDRC also maintains a collection of enhancer-GAL4 driver lines. Nearly all lines are in duplicate. Users can search for the stocks or DNA constructs for the gene of interest by entering CG number, synonym, or Transformant ID. | RIN, Resource Information Network, biomaterial supply resource, drosophila, fly lines, RRID Community Authority | is listed by: Resource Information Network | Free, Public, Must create an account, Acknowledgment required | https://drive.google.com/file/d/1VvsxJMXBDPlO5M_HWGOkeYXbg7zk_68E/view?usp=drivesdk | http://www.csf.ac.at/facilities/vienna-drosophila-resource-center/, http://stockcenter.vdrc.at/control/main | SCR_013805 | 2026-08-08 12:00:17 | 396 | |||||||
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Emerald Cloud Lab Resource Report Resource Website 1+ mentions |
Emerald Cloud Lab (RRID:SCR_013976) | data acquisition software, software resource, software application, data management software, data processing software | A production service resource which allows researchers to conduct experimental procedures through the cloud. Researchers can ship samples for an experiment to Emerald, then design the experiment(s) over the web using ECL software. Emerald then conducts the experiment(s) in an automated lab as specified, organizing the data into a database in the cloud. Samples are then shipped back to the lab (within a metter of days) and results can be analyze ECL's data analysis suite. Standard experiment types include but are not limited to: analytical balance readings, light microscopy, solid phase extraction, flourescence thermodynamics, RNA extraction/cDNA prep, and Western blot. Additional experiment types may be contributed. | production service resource, automated experiment, cloud |
is listed by: Connected Researchers is related to: Connected Researchers |
Charge by experiment on a per sample basis with no minimum transaction size, The community can contribute to this resource | SCR_013976 | 2026-08-08 12:00:27 | 3 | ||||||||||
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IPython Notebook Resource Report Resource Website 1+ mentions |
IPython Notebook (RRID:SCR_013984) | web application, software resource | A web application and interactive computational environment where users can combine code execution, rich text, mathematics, plots, and rich media. IPython Notebook consists of two parts, the web application and plain texts. The Ipython Notebook web application is used for interactive authoring of literate computations, in which explanatory text, mathematics, computations, and rich media output may be combined. Input and output are stored in persistent cells that may be edited in-place. The plain text documents, called notebooks, record and distribute the results of the rich computations. Saved files in the notebook can be put under version control and shared with colleagues. | web application, computational environment, interactive, Python, code |
is used by: Wakari is listed by: Connected Researchers is related to: IPython is related to: Python Programming Language is related to: Connected Researchers is related to: Wakari is related to: SciPy |
Microsoft ; Alfred P. Sloan Foundation ; Rackspace |
Free, Public | SCR_013984 | 2026-08-08 12:00:04 | 8 | |||||||||
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Vanderbilt University Medical Center; Tennessee; USA Resource Report Resource Website 1+ mentions |
Vanderbilt University Medical Center; Tennessee; USA (RRID:SCR_014046) | A public health center and research institution affiliated with Vanderbilt University. |
is related to: Vanderbilt Clinical Research Center is related to: Cooperative Human Tissue Network Western Division at Vanderbilt University Medical Center has parent organization: Vanderbilt University; Tennessee; USA is parent organization of: Vanderbilt University Medical Center Pharmacology is parent organization of: Vanderbilt Digestive Disease Research Center is parent organization of: Vanderbilt Digestive Disease Research Center Bioanalytical Mass Spectrometry and Proteomics Core is parent organization of: Vanderbilt Center for Diabetes Translation Research Administrative Core is parent organization of: Vanderbilt Center for Diabetes Translation Research Behavioral Intervention Technologies and Services Core is parent organization of: Vanderbilt Center for Diabetes Translation Research Community Outreach and Heath Disparities Core is parent organization of: Vanderbilt Center for Diabetes Translation Research Community Engagement Core is parent organization of: Vanderbilt Center for Diabetes Translation Research is parent organization of: Vanderbilt Center for Diabetes Translation Research Translation Methods Core is parent organization of: Vanderbilt Digestive Disease Research Center Flow Cytometry Core is parent organization of: Vanderbilt Digestive Disease Research Center Cellular Imaging Core |
SCR_014046 | VU Medical Center, Vanderbilt University Medical Center | 2026-08-08 12:00:27 | 2 | ||||||||||||
|
Cytobank Resource Report Resource Website 1000+ mentions |
Cytobank (RRID:SCR_014043) | web application, software resource, training service resource, service resource | A cloud-based platform which allows users to analyze, visualize, and archive multiparamter cytometry data for single-cell biology. Multiple single-cell data sets can be analyzed and visualized simultaneously with a variety of graphics, inlcuding Sunburst, SPADE, and viSNE. Users can store and back up related data such as protocols, microscopy images, and presentations and collaborate and share analysis and data sets with other Cytobank users. Cytobank also provides a variety of services and training sessions to assist with experiment workflow. | single-cell biology, data, platform, cytometry, analyze, visualize, graphic, training service |
is related to: FLOWRepository is related to: FLOWRepository |
Free, Price varies for different options, Available to the research community, Available to industry | SCR_014043 | Cytobank Inc. | 2026-08-08 12:00:27 | 1326 | |||||||||
|
StatCrunch Resource Report Resource Website 10+ mentions |
StatCrunch (RRID:SCR_013992) | web application, data or information resource, software resource | A web application which allows users to collect data, perform complex analyses, and generate results. Users can upload data sets from their computer or from the internet for data analysis and graph creation which can be saved, printed, and downloaded. More than 15,000 statistical data sets are available. | web application, statistics, data analysis, data set, graph |
is listed by: Connected Researchers is related to: Connected Researchers |
The community can contribute to this resource | SCR_013992 | 2026-08-08 12:00:18 | 13 | ||||||||||
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Wakari Resource Report Resource Website 1+ mentions |
Wakari (RRID:SCR_013995) | web application, software resource | A web application which performs Python data analysis. Users can create IPython notebooks to hold uploaded data and use various tools to describe, analyze, and visualize the data. Notebooks, data, and Anaconda environments can be shared as "bundles" with other users, who can edit and download them. | web application, data analysis, Python data analysis, visualization |
uses: IPython Notebook is listed by: Connected Researchers is related to: Connected Researchers is related to: IPython Notebook |
Free, Fee (for different packages) | SCR_013995 | 2026-08-08 12:00:26 | 1 | ||||||||||
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McGill University Health Centre; Quebec; Canada Resource Report Resource Website 1+ mentions |
McGill University Health Centre; Quebec; Canada (RRID:SCR_014048) | MUHC | A public health center and research institution affiliated with McGill University. |
is related to: Cancer Research Network of the FRSQ has parent organization: McGill University; Montreal; Canada |
Public | SCR_014048 | McGill University Health Centre | 2026-08-08 12:00:04 | 3 | ||||||||||
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ChEMBL Resource Report Resource Website 1000+ mentions |
ChEMBL (RRID:SCR_014042) | database, data or information resource | Collection of bioactive drug-like small molecules that contains 2D structures, calculated properties and abstracted bioactivities. Used for drug discovery and chemical biology research. Clinical progress of new compounds is continuously integrated into the database. | database, compound, data, bioassay, bioactive, molecule, drug, discovery |
is used by: GEROprotectors is used by: PubChem is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Wellcome Trust ; EMBL Member States ; Medicines for Malaria Ventures ; EU Innovative Medicines Initiative ; GSK ; Syngenta ; Pfizer |
PMID:21948594 | Public, Free, Freely available, Acknowledgement requested | r3d100010539 | https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320, https://doi.org/10.17616/R3C320 | SCR_014042 | ChEMBLdb, Chembl, ChEMBL Database | 2026-08-08 12:00:05 | 3035 | |||||
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Limelight Resource Report Resource Website 10+ mentions |
Limelight (RRID:SCR_014254) | resource, data acquisition software, software resource, software application, data analysis software, time-series analysis software, data processing software | A video tracking system designed for high-throughput behavioral experiments. LimeLight can track up to 4 arenas at once and can collect images at up to 30 frames per second for one animal or up to 8 frames per second when tracking 4 arenas at once. The tracking system has 2 different hardware configurations: the 1-camera system can be used to record 1 to 4 animals at once, while for multiple animals, each one is placed in a separate arena in one quadrant of the image. The software contains productivity features such as flexible arena setup, user-defined behavior scoring, stimulus control, and various analytical functions for quantifying behavior. The program is designed for experiments such as Open Field, Plus Maze, Radial Arm Maze, Zero Maze, Novel Object Recognition, Conditioned Place Preference, and Barnes Maze. | data acquisition software, time series analysis software, data analysis software, video tracking system, behavioral experiment, high throughput, hardware, instrument, equipment | is related to: FreezeFrame | Account required | SCR_014254 | 2026-08-08 12:00:29 | 17 | ||||||||||
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L-Neuron Resource Report Resource Website 1+ mentions |
L-Neuron (RRID:SCR_014132) | software resource, software application, simulation software | A program which creates anatomically realistic virtual neurons using the formalism of the Lyndenmayer systems to implement sets of neuroanatomical rules discovered by several research groups. The program algorithms read in experimental data - in the form of statistical distributions - to generate virtual structures. L-Neuron samples the values of the parameters within these statistical distributions in a stochastic (random) fashion during dendritic growth. | simulation softare, virtual neuron, neuronal modeling |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: George Mason University; Virginia; USA |
Available to the research community | http://krasnow1.gmu.edu/cn3/L-Neuron/home.htm | SCR_014132 | L Neuron | 2026-08-08 12:00:28 | 5 | ||||||||
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CSIM Resource Report Resource Website 10+ mentions |
CSIM (RRID:SCR_014256) | software resource, software application, simulation software | Software tool for simulating heterogeneous networks composed of different model neurons and synapses. CSIM simulates networks containing up to a few thousand neurons and up to the order of 1.000.000 synapses. It is capable of supporting different levels of modeling and has an object oriented design. A user manual is available on the site. | simulation software, circuit simulator, heterogeneous network, object oriented design | is related to: PCSIM | Available for download | SCR_014256 | Circuit SIMulator, CSIM: A neural Circuit SIMulator | 2026-08-08 12:00:08 | 11 | |||||||||
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NeuriteTracer Resource Report Resource Website 10+ mentions |
NeuriteTracer (RRID:SCR_014146) | data acquisition software, software resource, software application, data processing software | A set of ImageJ plugins for fully automated measurement of neurite outgrowth in fluorescence microscopy images of cultured neurons. The plugin analyzes fluorescence microscopy images of neurites and nuclei of dissociated cultured neurons. Given user-defined thresholds, the plugin counts neuronal nuclei, and traces and measures neurite length. NeuriteTracer accurately measures neurite outgrowth from cerebellar, DRG and hippocampal neurons. | plugin, data acquisition software, neurite outgrowth, fluorescence microscopy image, neuron |
is used by: ImageJ is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: McGill University; Montreal; Canada |
PMID:17936365 | Availalble to the research community | http://fournierlab.mcgill.ca/styled-6/NeuriteTracer.html | SCR_014146 | 2026-08-08 12:00:28 | 39 | ||||||||
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NeuroElf Resource Report Resource Website 100+ mentions |
NeuroElf (RRID:SCR_014147) | workflow software, software toolkit, software resource, software application, data processing software | A Matlab-based toolbox initially created for reading, writing, and processing of BrainVoyager (QX) files in Matlab. | matlab, software toolbox, brainvoyager |
uses: MATLAB is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: BrainVoyager |
Freely available | http://neuroelf.net, http://neuroelf.net/wiki/doku.php | SCR_014147 | 2026-08-08 12:00:06 | 155 | |||||||||
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COPASI Resource Report Resource Website 100+ mentions |
COPASI (RRID:SCR_014260) | COPASI | software resource, software application, simulation software, data analysis software, standalone software, data processing software | Software application for simulation and analysis of biochemical network models and their dynamics. COPASI supports models in the SBML standard and can simulate their behavior using ODEs or Gillespies stochastic simulation algorithm. Arbitrary discrete events can be included in such simulations. Models in COPASI are based on reactions that convert a set of species into another set of species. Simulation can be performed either with stochastic kinetics or with differential equations. COPASI also includes various methods of analysis and data visualization. | standalone software, simulation software, data analysis, biochemical system simulator, biochemical network model, biochemical network dynamics, bio.tools |
is listed by: Debian is listed by: bio.tools |
DOI:10.1093/bioinformatics/btl485 | Free, Available for download, Acknowledgement requested | biotools:copasi | https://bio.tools/copasi | SCR_014260 | COPASI: Biochemical System Simulator | 2026-08-08 12:00:29 | 445 | |||||
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CYANA Resource Report Resource Website 100+ mentions |
CYANA (RRID:SCR_014229) | software resource, software application, data analysis software, data processing software | Software for automated structure calculation of biological macromolecules on basis of conformational constraints from nuclear magnetic resonance. Program for automated NMR protein structure calculation. CYANA requires a sufficient list of assigned chemical shifts and lists of cross-peak positions and columns from 2D, 3D, or4D NOESY spectra in order to calculate the assignment of the NOESY cross-peaks and the 3D structure of the protein in solution. | protein structure, nmr, noesy, 3d structure, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Goethe University Frankfurt am Main; Hessen; Germany has parent organization: RIKEN |
PMID:15318003 PMID:25801209 |
Available to the academic community, Available to commercial user, Pay for license | SCR_021949, biotools:cyana | http://www.las.jp/english/products/cyana.html, https://bio.tools/cyana, https://dbpedia.org/page/CYANA_(software) | SCR_014229 | 2026-08-08 12:00:07 | 428 | |||||||
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TopSpin Resource Report Resource Website 5000+ mentions |
TopSpin (RRID:SCR_014227) | data acquisition software, software resource, software application, data analysis software, data processing software | Software package for NMR spectra acquisition, processing, and data analysis. Features include: deconvolution/spectrum simulation/iteration; comprehensive functionalities for processing, displaying and analyzing one and multi-dimensional spectra; and user customization. A full list of features is available on the website. | nmr spectra, data analysis software, data acquisition software | Pay for product | SCR_014227 | 2026-08-08 12:00:21 | 6242 | |||||||||||
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ExPosition Packages Resource Report Resource Website 1+ mentions |
ExPosition Packages (RRID:SCR_014107) | software resource, software application, data analysis software, data processing software | An R package for descriptive (i.e., fixed-effects) multivariate analysis with singular value decomposition. | data analysis software, r package, multivariate analysis, singular value decomposition |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Texas at Dallas; Texas; USA |
https://cran.r-project.org/web/packages/ExPosition/index.html | SCR_014107 | CRAN Package Exposition | 2026-08-08 12:00:27 | 1 | |||||||||
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Sparky Resource Report Resource Website 100+ mentions |
Sparky (RRID:SCR_014228) | software resource, software application, data analysis software, data processing software | A graphical NMR assignment and integration program for proteins, nucleic acids, and other polymers. Sparky displays NMR spectra, the peaks of which users may pick, assign, and integrate using a graphical interface. Users can work with any number of 2, 3 or 4 dimensional spectra simultaneously. Spectra for input to Sparky can be produced with processing programs NMRPipe, Felix, VNMR, XWinNMR or UXNMR. Output consists of text peak lists showing assignments, chemical shifts, volumes, line widths, etc. | graphical nmr, protein integration, nucleic acid integration | has parent organization: University of California at San Francisco; California; USA | Free, Acknowledgement requested | SCR_014228 | 2026-08-08 12:00:29 | 488 |
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