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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Image Reader LAS-1000 Resource Report Resource Website 10+ mentions |
Image Reader LAS-1000 (RRID:SCR_014585) | data acquisition software, software resource, software application, data processing software | A software which is used to control the LAS-1000plus luminescent image analyzer. This software adjusts the focus, exposure time, sensitivity, and cooling temperature, and will record the data after the sample is scanned. | image analyzer, exposure, focus, sensitivity, cooling temperature, data, software | Commercial, Paired with a scanning system | SCR_014585 | 2026-08-08 12:00:33 | 45 | |||||||||||
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PowerChrom Resource Report Resource Website 50+ mentions |
PowerChrom (RRID:SCR_014588) | data acquisition software, software resource, software application, data analysis software, data processing software | THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 19, 2022. A software which collects, displays, and analyzes chromatographic signals. This software doesn't require any programming, and collects signals from one or two detectors. PowerChrom is supplied as part of the PowerChrom system, or separately for use with e-corder recording systems. | chromatography, chromatography data, no programming, e-corder, software, data acquisition, data analysis | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014588 | 2026-08-08 12:00:33 | 97 | |||||||||||
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Metapath Resource Report Resource Website 10+ mentions |
Metapath (RRID:SCR_014621) | software resource, software application, data analysis software, data processing software | A statistical package for comparing metagenomic data-sets at the pathway level. It relies on a combination of metagenomic sequence data and prior metabolic pathway knowledge, which is pulled from KEGG. | microbiome, statistics, metagenomics, pathway, sequence, comaprison | is listed by: Human Microbiome Project | Available for download | SCR_014621 | 2026-08-08 12:00:14 | 19 | ||||||||||
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Vision Egg Resource Report Resource Website 10+ mentions |
Vision Egg (RRID:SCR_014589) | software library, software resource, software toolkit | A programming library that uses standard graphics cards to produce 2D and 3D visual stimuli for vision research experiments. | standard graphic, visual stimuli, vision research, software | is hosted by: GitHub | Open Source, Free, Source code is hosted on GitHub | SCR_014589 | 2026-08-08 12:00:13 | 16 | ||||||||||
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Open Targets Resource Report Resource Website 100+ mentions |
Open Targets (RRID:SCR_014622) | A public–private initiative that supports research that provides evidence on the biological validity of therapeutic targets and that gain insight into the effectiveness of pharmacological intervention. It aims to provide a research and development framework that applies human disease. It shares its information openly. | initiative, therapeutic, pharmacology, intervention, research and development, framework, man disease | is affiliated with: Wellcome Trust Sanger Institute; Hinxton; United Kingdom | Open, Can interact with companies | http://www.ebi.ac.uk/about/news/press-releases/open-targets-new-name-new-data#annotations:B-esfHqUEeaXCGe7nJasQw | SCR_014622 | Centre for Therapeutic Target Validation, Center for Therapeutic Target Validation | 2026-08-08 12:00:28 | 143 | |||||||||
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Zeiss Axioskop Software Resource Report Resource Website 1+ mentions |
Zeiss Axioskop Software (RRID:SCR_014587) | data acquisition software, software resource, software application, data processing software | THIS RESOURCE IS NO LONGER IN SERVCE, documented January 19, 2022. Software used to control the Zeiss Axioskop microscope. | microscope, microscope software, zeiss, microscope management software, system management software | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014587 | 2026-08-08 12:00:27 | 9 | |||||||||||
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HUMAnN Resource Report Resource Website 500+ mentions |
HUMAnN (RRID:SCR_014620) | workflow software, software resource, software application, data processing software | A pipeline which takes short DNA/RNA reads as inputs and produces gene and pathway summaries as outputs. The pipeline converts sequence reads into coverage and abundance tables summarizing the gene families and pathways in one or more microbial communities. | microbiome, dna reads, rna reads, workflow software, pipeline | is listed by: Human Microbiome Project | SCR_014620 | HMP Unified Metabolic Analysis Network (HUMAnN), HMP Unified Metabolic Analysis Network | 2026-08-08 12:00:33 | 507 | ||||||||||
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HDD Access Resource Report Resource Website |
HDD Access (RRID:SCR_014581) | HDD | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 29,2025. Database built up with software and services that maintains multiple versions of terminologies, map sets, and values sets concurrently. HDD Access has superseded Concept Hub. | database, terminology, healthcare, biomedical, data dictionary, concept hub | is related to: Concept Hub | Commercial | nif-0000-33434 | SCR_014581 | 3M HDD Access, 3M Healthcare Data Dictionary | 2026-08-08 12:00:33 | 0 | |||||||
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FluorChem Q Imager Resource Report Resource Website 100+ mentions |
FluorChem Q Imager (RRID:SCR_014549) | software resource, software application, data analysis software, data visualization software, data processing software | A software used for quantitative Western blot imaging and analysis. This software is compatible with several dyes and kits, providing extra flexibility for application. This software is designed to be able to look at multiple proteins simultaneously on a single assay. This software is sensitive enough to distinguish co-migrating proteins, such as phosphorylated and unphosphorylated isoforms. | western blot, western blot analysis, co-migrating proteins, single assay, phosphorylated, unphosphorylated, isoforms, | Commercial | SCR_014549 | 2026-08-08 12:00:13 | 113 | |||||||||||
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Olympus cellSens Software Resource Report Resource Website 1000+ mentions Rating or validation data |
Olympus cellSens Software (RRID:SCR_014551) | image acquisition software, software toolkit, image analysis software, data acquisition software, software resource, software application, data processing software | Software suite for image acquisition and analysis. The software can be paired with high-quality cameras to maximize output quality and export it for sharing and research applications. | image, analysis, record, video, research, optimize, processing, acquisition, camera, Olympus | Restricted | SCR_016238, SCR_018869 | SCR_014551 | Olympus CellSens Imaging software, Olympus cellSens Dimension | 2026-08-08 12:00:32 | 3045 | |||||||||
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CRAIG H. NEILSEN FOUNDATION Resource Report Resource Website 10+ mentions |
CRAIG H. NEILSEN FOUNDATION (RRID:SCR_014552) | CHN | institution | A non-profit organization that awards grants to a broad spectrum of charities, including those that benefit spinal cord injury efforts. The Foundation is primarily dedicated to funding extensive research, education and quality of life programs for improving the lives of people affected by spinal cord injury. | spinal cord, Paralysis, spinal cord injury | Crossref funder ID: 100005191, grid.428355.d | https://ror.org/00k0a6x92 | SCR_014552 | CRAIG NEILSEN FOUNDATION, NEILSEN FOUNDATION | 2026-08-08 12:00:13 | 12 | ||||||||
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ELIXIR Tools and Data Services Registry Resource Report Resource Website 10+ mentions |
ELIXIR Tools and Data Services Registry (RRID:SCR_014556) | data or information resource, portal, topical portal | Elixir Interoperability Platform to help people and machines to discover, access, integrate and analyse biological data. Encourages life science community to adopt standardized file formats, metadata, vocabularies and identifiers and works internationally to achieve its goals. Bioinformatics resource registry that provides scientific and technical information about analytical tools and data services for bioinformatics. Gateway to databases and tools for life science data analysis.Provides comprehensive and up-to-date catalogue of resources that are interactive and downloadable, and that offer programmatic access. The registry also allows the community to upload their own resources to the registry following a simple log in procedure. | bioinformatics, data service registry, tool registry, resource registry, registry |
lists: gProfiler2 lists: Galactic Circos lists: bio.tools is affiliated with: bio.tools is related to: FAIRsharing is related to: Laniakea |
Free, Freely available | SCR_014556 | European Infrastructure for Biological Information Tools | 2026-08-08 12:00:32 | 21 | |||||||||
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UCSF Brain and Spinal Injury Center (UCSF-BASIC) Resource Report Resource Website |
UCSF Brain and Spinal Injury Center (UCSF-BASIC) (RRID:SCR_014553) | group | A center that conducts basic science and clinical research concerning spinal cord injury located at both the University of California San Francisco and the Zuckerberg San Francisco General Hospital. | spinal cord injury, traumatic brain injury, paralysis, neuroprotection, regeneration, clinical trials, translational research, syndromics | SCR_014553 | 2026-08-08 12:00:26 | 0 | ||||||||||||
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BioBlend Library Resource Report Resource Website 1+ mentions |
BioBlend Library (RRID:SCR_014557) | software library, software resource, software toolkit | A Python library which provides Python access to and interaction with Galaxy's API and CloudMan. The library allows users to create a CloudMan compute cluster via an API and directly from a local machine, reconnect to an existing CloudMan instance and manipulate it, and interact with Galaxy via a straightforward API and an object-oriented API. The library itself can be used with either service irrespective of the other. | python, library, cloudman, api, galaxy | is hosted by: GitHub | Available for download | SCR_014557 | BioBlend | 2026-08-08 12:00:13 | 8 | |||||||||
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NeuroRD Resource Report Resource Website 10+ mentions |
NeuroRD (RRID:SCR_014769) | software resource, software application, simulation software | Stochastic reaction-diffusion simulator in Java which is used for simulating neuronal signaling pathways. | simulation software, simulator, java, neuronal signaling pathway, neuron | HFSP ; NIMH K21-MH01141; NSF IBN 0077509; CRCNS program R01 AA16022; CRCNS program AA18066 |
Available for download | https://github.com/neurord/stochdiff/releases | SCR_014769 | 2026-08-08 12:00:35 | 13 | |||||||||
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COMSOL Multiphysics Resource Report Resource Website 50+ mentions |
COMSOL Multiphysics (RRID:SCR_014767) | software resource, software application, simulation software | General-purpose software platform for modeling and simulating physics-based problems which accounts for coupled or multiphysics phenomena. The platform includes a set of core physics interfaces for common physics application areas such as structural analysis, laminar flow, pressure acoustics, transport of diluted species, electrostatics, electric currents, heat transfer, and Joule heating. | simulation software, software platform, physics, problem solver | is listed by: SoftCite | Commercially available | SCR_014767 | 2026-08-08 12:00:30 | 51 | ||||||||||
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Relibase Resource Report Resource Website 1+ mentions |
Relibase (RRID:SCR_014888) | web application, database, data or information resource, software resource | Web-based system for searching and analysing protein-ligand structures in the Protein Data Bank (PDB). The database provides an easily accessible web-browser interface and clear 3D structure visualisation that allows for 3D protein-ligand interaction searches, automatic superimposition and detailed analysis of related binding sites to identify protein flexibility, ligand overlap, and conserved water positions. | structural biology, protein, ligand, protein data bank, pdb, visualization, analysis, molecular recognition | Available to the academic community | SCR_014888 | 2026-08-08 12:00:18 | 5 | |||||||||||
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ENIGMA-DTI Pipeline Resource Report Resource Website 50+ mentions |
ENIGMA-DTI Pipeline (RRID:SCR_014649) | protocol | Pipeline which provides tools to extract whole-brain average and regional measurements from DTI images including FA, AD, RD and MD. Protocols for preprocessing, ENIGMA-DTI processing (skeletonization and ROI extraction), and GWAS analysis are available. Software tools used for each process are listed within the protocols. | dti, enigma, protocol, pipeline |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of Southern California; Los Angeles; USA has parent organization: ENIGMA |
NIBIB U54 EB020403 | Available for download from NITRC | http://www.nitrc.org/projects/enigma_dti | SCR_014649 | ENIGMA-DTI protocol, ENIGMA DTI pipeline, ENIGMA DTI protocol | 2026-08-08 12:00:28 | 50 | |||||||
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BatchTINT Resource Report Resource Website 1+ mentions |
BatchTINT (RRID:SCR_014804) | BatchTINTV2, BatchTINTV3 | software repository, software resource, software application, data analysis software, data processing software | GUI created by the Taub Institute in order to create an end-user friendly batch processing solution to complement Axona's new command line modification of TINT. This GUI allows the user to define a directory. Within this directory it will be continuously (unless closed) searching for new files to analyze via TINT. | python, gui, batch processing, tint, axona, directory | NIA R01 AG050425; Alzheimer’s Association 2015NIRG341570 |
DOI:10.5281/zenodo.200977 | Open access, Available for download, Operates on Windows | https://doi.org/10.5281/zenodo.200977 | https://github.com/GeoffBarrett/BatchTINTV2/tree/2.0.0 | SCR_014804 | BatchTINTV2, BatchTINTV3 | 2026-08-08 12:00:30 | 3 | |||||
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HIPPIE Resource Report Resource Website 100+ mentions |
HIPPIE (RRID:SCR_014651) | web application, software resource | Web tool used to generate confidence scored and functionally annotated human protein-protein interaction networks. Users can run a protein query using a UniProt identifier (ID or accession), gene symbol or Entrez gene id, or a network query using set fields. | web tool, web application, protein protein interaction, reference tool, protein query, network query, human protein protein interaction network | Helmholtz Alliance in Systems Biology ; BMBF 01GS08170 |
DOI:10.1371/journal.pone.0031826 | Available on the web, Available for download, Acknowledgement requested | SCR_014651 | Human Integrated Protein Protein Interaction Reference, Human Integrated Protein-Protein Interaction rEference, Human Integrated Protein-Protein Interaction rEference (HIPPIE) | 2026-08-08 12:00:15 | 142 |
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