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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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NIF Registry Automated Crawl Data Resource Report Resource Website 1+ mentions |
NIF Registry Automated Crawl Data (RRID:SCR_012862) | NIF Registry Automated Crawl Data, RDP | data or information resource, data set | An automatic pipeline based on an algorithm that identifies new resources in publications every month to assist the efficiency of NIF curators. The pipeline is also able to find the last time the resource's webpage was updated and whether the URL is still valid. This can assist the curator in knowing which resources need attention. Additionally, the pipeline identifies publications that reference existing NIF Registry resources as this is also of interest. These mentions are available through the Data Federation version of the NIF Registry, http://neuinfo.org/nif/nifgwt.html?query=nlx_144509 The RDF is based on an algorithm on how related it is to neuroscience. (hits of neuroscience related terms). Each potential resource gets assigned a score (based on how related it is to neuroscience) and the resources are then ranked and a list is generated. | resource, mention, update |
is used by: NIF Data Federation is used by: Integrated Datasets is related to: PubMed Central is related to: Integrated Auto-Extracted Annotation is related to: Integrated Manually Extracted Annotation is related to: PubMed has parent organization: Neuroscience Information Framework |
U.S. Department of Health and Human Services ; NIH Blueprint for Neuroscience Research ; NIDA contract HHSN27120080035C |
PMID:22434839 | Individual resources within the data set are licensed by the respective owners. The data set of these resources is freely available for use and distribution by you subject to citation of NIF in accordance with the Creative Commons Attribution License. | nlx_144525 | http://lucene1.neuinfo.org/nif_resource/current/ | SCR_012862 | Resource Discovery Pipeline | 2026-08-08 12:06:24 | 2 | ||||
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Ranking Tables of NIH Funding to US Medical Schools in 2010 Resource Report Resource Website 1+ mentions |
Ranking Tables of NIH Funding to US Medical Schools in 2010 (RRID:SCR_013272) | data or information resource, data set | Excel files available for download of ranking tables of NIH Funding to US Medical Schools in 2010, school and Principal Investigator (PI) rankings by Medical School Department, direct plus indirect costs (excluding both R & D contracts and American Recovery and Reinvestment Act (ARRA) Awards), etc. Categories under the Basic Science Department and Clinical Science Department are available as well as the rank of each School of Medicine from 2001-2010. The data in the 2010 Award files was obtained from the Research Portfolio Online Reporting Tool (RePORT) from the National Institutes of Health at http://report.nih.gov/award/trends/AggregateData.cfm. The Award Data correspond to the US Government fiscal year. Awards for 2010 correspond to those granted from 1 October 2009-30 September 2010. There is considerable variation on how universities credit awards and how the NIH deals with these variations. | funding, us, medical school, ranking, department, award |
uses: National Institutes of Health Research Portfolio Online Reporting Tool is related to: National Institutes of Health has parent organization: Blue Ridge Institute for Medical Research; North Carolina; USA |
nif-0000-06697 | SCR_013272 | 2010 Ranking Tables of NIH Funding | 2026-08-08 12:06:25 | 1 | |||||||||
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PhyloTree.org Resource Report Resource Website 100+ mentions |
PhyloTree.org (RRID:SCR_012948) | PhyloTree.org | data or information resource, data set | A phylogenetic tree of global human mitochondrial DNA variation, based on both coding- and control-region mutations, and including haplogroup nomenclature. | is listed by: OMICtools | PMID:18853457 | Free, Acknowledgement requested | OMICS_01643 | SCR_012948 | PhyloTree | 2026-08-08 12:06:25 | 370 | |||||||
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MGI strains Resource Report Resource Website 1+ mentions |
MGI strains (RRID:SCR_012950) | FIMRe | data or information resource, data set | A list of major inbred mouse strains from the Jackson laboratories. This list is not being actively maintained (found on Nov 27, 2013). |
is related to: Jackson Laboratory is related to: Mutant Mouse Resource and Research Center is related to: European Mouse Mutant Archive is related to: RIKEN BioResource Center has parent organization: Mouse Genome Informatics (MGI) |
nlx_155865 | SCR_012950 | 2026-08-08 12:06:18 | 2 | ||||||||||
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Stark Cross-Sectional Aging Resource Report Resource Website 1+ mentions |
Stark Cross-Sectional Aging (RRID:SCR_014171) | data or information resource, data set | Behavioral and imaging data from about 120 participants aged 18-89. Data were collected as part of a grant to use high-resolution imaging and advanced behavioral tasks to understand how aging affects the hippocampus and how this is related to age-related cognitive decline. The full dataset includes traditional neuropsycholgical measures, hippocampal-specific behavioral measures, whole-brain DTI, high-resolution DTI of the medial temporal lobes, and structural MRI including segmentation of grey/white/CSF, of cortical regions and of hippocampal subfields. | data set, aging, hippocampus, behavioral, dti, mri, image |
uses: Neuroimaging Informatics Technology Initiative is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of California at Irvine; California; USA |
NIA R01 AG034613 | Available to the research community | SCR_014171 | 2026-08-08 12:06:19 | 1 | |||||||||
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CMA Resource Report Resource Website 10+ mentions |
CMA (RRID:SCR_012779) | CMA | commercial organization, software resource | A software package to do meta-analysis which works in a spreadsheet interface and also provides forest plots, which are useful for visualizing between-study heterogeneity. | is listed by: OMICtools | Commercial license | OMICS_00233 | SCR_012779 | Comprehensive Meta-analysis | 2026-08-08 12:06:23 | 23 | ||||||||
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Thermo Fisher: Orbitrap Exploris 120 high-resolution mass spectrometer Resource Report Resource Website 1+ mentions |
Thermo Fisher: Orbitrap Exploris 120 high-resolution mass spectrometer (RRID:SCR_027370) | instrument resource | Orbitrap Exploris 120 LC-MS spectrometry instruments | SCR_027370 | 2026-08-08 12:08:07 | 1 | |||||||||||||
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iDEP: Integrated Differential Expression and Pathway analysis Resource Report Resource Website 10+ mentions |
iDEP: Integrated Differential Expression and Pathway analysis (RRID:SCR_027373) | iDEP | web application, software resource | Integrated web application for differential expression and pathway analysis of RNA-Seq data. | differential expression, pathway analysis, RNA-Seq data, | NIGMS GM083226; NSF ; State of South Dakota |
PMID:30567491 | Free, Freely available | SCR_027373 | 2026-08-08 12:08:00 | 19 | ||||||||
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EssSubgraph Resource Report Resource Website 1+ mentions |
EssSubgraph (RRID:SCR_027354) | EssSubgraph | software resource, algorithm resource | A model algorithm that integrates omics data and network data to predict essential genes. | Biomarker, essential gene prediction, GNN | Cancer | National Science Foundation 2243562; National Institutes of Health R35GM149531 |
DOI:10.1101/2025.07.21.665218 | Integrating omics data and protein-protein interaction network data to predict essential genes. | https://github.com/wenmm/EssSubgraph/tree/main | SCR_027354 | 2026-08-08 12:08:00 | 1 | ||||||
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Olympus: BX41 Clinical Microscope Resource Report Resource Website 1+ mentions |
Olympus: BX41 Clinical Microscope (RRID:SCR_027355) | instrument resource | Olympus BX41 is clinical and research grade microscope. Can be customized. Offered as pre-configured with your choice of viewing head - binocular, ergo binocular, or trinocular. This has Plan N 4x, 10x, 40x, 100x oil objectives but others can be provided if needed. Comes with XY mechanical stage with slide holder and focusable condenser. | Microscope, Olympus, used microscope, | Restricted | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027355.pdf | Model_Number_Olympus_BX41 | SCR_027355 | Olympus BX41 | 2026-08-08 12:08:11 | 3 | ||||||||
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TOYOBO Resource Report Resource Website 1+ mentions |
TOYOBO (RRID:SCR_027440) | commercial organization | Japanese company that began as a textile manufacturer in 1882 and has expanded to become a global provider of high-function products, including films, functional polymers, industrial materials, and biotechnology products such as enzymes and diagnostic reagents. The company's business is organized around its core technologies in polymerization, modification, processing, and biotechnology, allowing it to contribute to fields like healthcare, environment, and electronics. | Japan, polymerization, modification, processing, biotechnology, healthcare, environment, electronics | Crossref Funder ID 100019953, ISNI 0000 0001 2217 1263, GRID grid.471279.e, Wikidata Q7830642 | https://ror.org/020a33943 | SCR_027440 | 2026-08-08 12:08:12 | 6 | ||||||||||
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Revvity: IVIS Spectrum 2 In Vivo Imaging System Resource Report Resource Website 1+ mentions |
Revvity: IVIS Spectrum 2 In Vivo Imaging System (RRID:SCR_027425) | instrument resource | In vivo optical imaging system used in preclinical research to non-invasively monitor and quantify biological processes in living animals over time. Designed with innovative camera with patented coating that delivers high sensitivity 2D and 3D bioluminescence and fluorescence imaging capabilities. | Imaging instrument, in vivo imaging studies, 2D and 3D bioluminescence and fluorescence imaging, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027425.pdf | Model_Number_IVIS_Spectrum_2 | SCR_027425 | IVIS Spectrum 2 In Vivo Imaging System | 2026-08-08 12:08:01 | 3 | |||||||||
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Janelia Automatic Animal Behavior Annotator Resource Report Resource Website 1+ mentions |
Janelia Automatic Animal Behavior Annotator (RRID:SCR_027430) | JAABA | web application, software resource | Web application to create variety of automatic behavior classifiers. These classifiers input the animals' trajectories computed by tracking system, and they output time series indicating whether each animal is performing a given behavior in each video frame. Interactive machine learning for automatic annotation of animal behavior. Used to automatically compute interpretable, quantitative statistics describing video of behaving animals. | Automatic behavior classifiers creation, automatic behavior classifiers, automatically compute interpretation, quantitative statistics, describing video of behaving animals, . | PMID:23202433 | Free, Freely available, | SCR_027430 | Janelia Automatic Animal Behavior Annotator (JAABA) | 2026-08-08 12:08:01 | 4 | ||||||||
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ChemDiv Resource Report Resource Website 10+ mentions |
ChemDiv (RRID:SCR_027402) | commercial organization | Target-to-Clinic Contract Research Organization (CRO) headquartered in San Diego, CA USA. ChemDiv executes pre-clinical discovery chemistry and biology for drug development and clinical trials for international portfolio of companies across the entire range of targets with small molecule and biotech drugs. The company operates multiple research and development (R&D) subsidiaries in Russia, Ukraine and China as well as business operations around the world. | drug development, small molecule, biotech drugs, | SCR_027402 | 2026-08-08 12:08:12 | 21 | ||||||||||||
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Bruker: Avance NMR Spectrometer Resource Report Resource Website 1+ mentions |
Bruker: Avance NMR Spectrometer (RRID:SCR_027378) | instrument resource | Bruker’s Avance NMR spectrometers are utilized in various scientific fields to elucidate the structure, dynamics, and interactions of molecules. Avance spectrometers are composed of three main hardware components: console, which is the central control unit of the NMR spectrometer, and houses sophisticated electronics for the generation of the pulse sequences and for data acquisition and processing; superconducting magnet to generate homogenous and stable magnetic field to polarize the nuclear spins in the sample; probe for transmitting radiofrequency pulses and detecting the resulting signals from the sample. | Bruker, spectrometer, Avance, nmr, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027378.pdf | SCR_027378 | 2026-08-08 12:08:11 | 3 | |||||||||||
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GWAS Atlas Resource Report Resource Website 10+ mentions |
GWAS Atlas (RRID:SCR_027466) | data or information resource, knowledge base | Updated knowledgebase integrating more curated associations in plants and animals. manually curated resource of genome-wide genotype-to-phenotype associations for a wide range of species. Database of publicly available GWAS summary statistics. Each GWAS can be browsed with the manhattan plot, risk loci, MAGMA (i.e. gene-based) results, SNP heritability and genetic correlations with other GWAS in the database. Full summary statistics can be downloaded from the original source following the provided links. | GWAS summary statistics, manually curated, genome-wide genotype-to-phenotype associations, plants, animals | PMID:36263826 | Free, Freely available | SCR_027466 | 2026-08-08 12:08:09 | 41 | ||||||||||
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Leica: Aperio AT2 DX System Resource Report Resource Website 1+ mentions |
Leica: Aperio AT2 DX System (RRID:SCR_027461) | instrument resource | 400 slide scanner with Aperio ImageScope DX clinical viewing software, and high-performance viewing workstation including color-calibrated medical grade monitors. System can be used standalone, or in conjunction with Aperio Path DX case management software, for streamlined, clinical workflow. Developed from Leica Biosystems,enables to produce consistent, diagnostic quality images, enabling pathologists to diagnose with confidence. | slide scanner, diagnostic quality images, imaging, pathology | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027461.pdf | Model_Number_Aperio_AT2_DX | SCR_027461 | Aperio AT2 DX System | 2026-08-08 12:08:02 | 1 | |||||||||
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Bechman Coulter: Labcyte Echo 550 acoustic liquid handler Resource Report Resource Website 1+ mentions |
Bechman Coulter: Labcyte Echo 550 acoustic liquid handler (RRID:SCR_027476) | instrument resource | Non-contact liquid handler that uses Acoustic Droplet Ejection (ADE) technology to precisely transfer nanoliter-sized droplets of liquid for high-throughput applications in pharmaceutical research, drug discovery, and various areas of genomics and biology. Echo 555 / 550 Liquid Handler: 2.5 nL increment; Flow rate:0.25 – 1 µL/sec; Ideal for reactions of 0.05 – 1 µL; Supports 384 and 1536-well source plate formats; Used for transfer of small molecules for high throughput screening. | Non-contact liquid handler, liquid handler, Acoustic Droplet Ejection, Becton Dickinson, droplet ejection, transfer nanoliter-sized droplets of liquid, high throughput screening, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027476.pdf | Model_Number_Echo_550 | SCR_027476 | 2026-08-08 12:08:02 | 4 | ||||||||||
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Agilent: 7000E Triple Quadrupole GC/MS system Resource Report Resource Website 1+ mentions |
Agilent: 7000E Triple Quadrupole GC/MS system (RRID:SCR_027552) | instrument resource | Agilent 7000E triple quadrupole GC/MS instruments incorporate intelligent technology that reduces instrument downtime and improves run times for maximum productivity in analytical labs. Mass spectrometer is used for routine, high-sensitivity analysis of targeted compounds in complex samples, especially for trace-level detection in areas like food safety and environmental testing. | mass spectrometer, analysis of targeted compounds in complex samples, | https://raw.githubusercontent.com/SciCrunch/RRID-Instruments/refs/heads/main/PDF/SCR_027552.pdf | Model_Number_Agilent_7000E | SCR_027552 | 7000E Triple Quadrupole GC/MS | 2026-08-08 12:08:10 | 1 | |||||||||
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NCI Age-Period-Cohort Web Tool Resource Report Resource Website 50+ mentions |
NCI Age-Period-Cohort Web Tool (RRID:SCR_027554) | web application, software resource | Web tool, developed by the U.S. National Cancer Institute (NCI), performs statistical modeling of cancer incidence or mortality data using age-period-cohort analysis. It allows users to examine and interpret temporal trends while disentangling the effects of age, calendar period, and birth cohort. The tool supports data import, graphical output, and model fit assessment via interactive web interface. | statistical modeling, cancer incidence, cancer mortality data, age-period-cohort analysis, | PMID:25146089 | Free, Freely available, | SCR_027554 | Age-Period-Cohort (APC) Web Tool | 2026-08-08 12:08:14 | 76 |
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