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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Nothing's Shocking Resource Report Resource Website |
Nothing's Shocking (RRID:SCR_000932) | data or information resource, narrative resource | A neuroscience blog written by Noah Gray. | neuroscience, blog, writing, article, noah gray | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_80372 | SCR_000932 | 2026-08-08 12:04:37 | 0 | ||||||||||
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Zebrafish - SCORE Imaging: Specimen in a Corrected Optical Rotational Enclosure Resource Report Resource Website 10+ mentions |
Zebrafish - SCORE Imaging: Specimen in a Corrected Optical Rotational Enclosure (RRID:SCR_001300) | SCORE imaging | data or information resource, narrative resource | Narrative resource describing a visual data analysis and collection approach that takes advantage of the cylindrical nature of the zebrafish allowing for an efficient and effective method for image capture called, Specimen in a Corrected Optical Rotational Enclosure (SCORE) Imaging. To achieve a non-distorted image, zebrafish were placed in a fluorinated ethylene propylene (FEP) tube with a surrounding, optically corrected imaging solution: water. By similarly matching the refractive index of the housing (FEP tubing) to that of the inner liquid and outer liquid (water), distortion was markedly reduced, producing a crisp imagable specimen that is able to be fully rotated 360 degrees. A similar procedure was established for fixed zebrafish embryos using convenient, readily available borosilicate capillaries surrounded by 75% glycerol. The method described could be applied to chemical genetic screening and other, related high-throughput methods within the fish community and among other scientific fields. | format, authoring tool, embryo, microscopy, publishing format, image |
is listed by: FORCE11 has parent organization: Mayo Clinic Minnesota; Minnesota; USA has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
NIGMS GM63904; NIDA DA14546 |
PMID:20528262 | nif-0000-07749 | SCR_001300 | Specimen in a Corrected Optical Rotational Enclosure imaging | 2026-08-08 12:04:38 | 11 | ||||||
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TherMos Resource Report Resource Website 100+ mentions |
TherMos (RRID:SCR_002790) | software resource, algorithm resource | Software used for estimating protein-DNA binding energies from in vivo binding profiles. It is a de novo motif discovery algorithm that exploits the information in transcription factor ChIP-seq or ChIP-exo datasets based on a more natural thermodynamic formalism., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | protein dna binding energy, in vivo binding profiles, motif discovery |
uses: MATLAB is listed by: OMICtools |
PMID:23595148 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00498 | SCR_002790 | 2026-08-08 12:04:41 | 208 | ||||||||
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enviPick Resource Report Resource Website 1+ mentions |
enviPick (RRID:SCR_003059) | software resource, web site | Software for sequential partitioning, clustering and peak detection of centroided LC-MS mass spectrometry data (.mzXML). Interactive result and raw data plot. | standalone software, mac os x, unix/linux, windows, r |
is listed by: OMICtools has parent organization: CRAN |
Free, Available for download, Freely available | OMICS_05010 | https://rdrr.io/cran/enviPick/ | SCR_003059 | enviPick: Peak picking for high resolution mass spectrometry data | 2026-08-08 12:04:53 | 2 | |||||||
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INCF Newsroom Resource Report Resource Website |
INCF Newsroom (RRID:SCR_006493) | INCF News | data or information resource, narrative resource | Find all news and updates about INCF and neuroinformatics in the International Neuroinformatics Coordinating Facility (INCF) Newsroom. | neuroinformatics, neuroscience | has parent organization: International Neuroinformatics Coordinating Facility | nlx_144530 | SCR_006493 | International Neuroinformatics Coordinating Facility Newsroom, International Neuroinformatics Coordinating Facility News | 2026-08-08 12:04:59 | 0 | ||||||||
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Efficient Mixed-Model Association Resource Report Resource Website 50+ mentions |
Efficient Mixed-Model Association (RRID:SCR_008217) | EMMA | software resource, algorithm resource | Statistical test for model organisms association mapping correcting for the confounding from population structure and genetic relatedness. EMMA takes advantage of the specific nature of the optimization problem in applying mixed models for association mapping, which substantially increases the computational speed and the reliability of the results. The current implementation of EMMA is available in an R package. The documentation is included in the installation package. | algorithm, organism statistical model, association mapping, r package |
is listed by: 3DVC has parent organization: University of California at Los Angeles; California; USA |
PMID:18385116 | Available for download | nif-0000-21753 | SCR_008217 | Efficient Mixed-Model Association (EMMA), Efficient Mixed Model Association | 2026-08-08 12:04:52 | 59 | ||||||
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NF Registry Resource Report Resource Website 1+ mentions |
NF Registry (RRID:SCR_006277) | NF Registry | patient registry, people resource | A patient registry to identify people with neurofibromatosis (NF) who are interested in participating in clinical trials, as well as determining the commonality of specific characteristics of NF. The NF Registry is committed to secure methodologies and pioneering research that will lead to improving the health and well-being of individuals and families affected by NF. This registry has been created to collect data on large numbers of people with NF. This has never existed before and will help: * Identify people who may be eligible for clinical trials or other research studies being conducted in the field of NF. New clinical trials are launched each year yet challenges identifying participants too often mean that these studies finish late or never really get started. Today, 80 percent of trials fail to recruit enough volunteers within planned timelines. Under enrollment is one of the most significant problems facing NF drug development. Together, we can solve it. * Determine the commonality of specific NF characteristics. This will help researchers and doctors devise better ways to care for people with NF If you or your child has been diagnosed with neurofibromatosis (NF) please join the NF Registry today. It''s quick, it''s easy, and it matters. The key to treatments lies within you researchers can''t deliver treatments without committed volunteers. | clinical trial, research study, adult human, child | has parent organization: PatientCrossroads | Neurofibromatosis | Childrens Tumor Foundation | nlx_151888 | SCR_006277 | Children''s Tumor Foundation NF Registry, Neurofibromatosis Registry, CTF NF Registry | 2026-08-08 12:04:49 | 1 | ||||||
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emedicinehealth: Dementia Due to HIV Infection Resource Report Resource Website |
emedicinehealth: Dementia Due to HIV Infection (RRID:SCR_004566) | Dementia Due to HIV Infection | data or information resource, narrative resource | A narrative resource that provides a wealth of information on topic including: * Dementia Due to HIV Infection Overview * Dementia Due to HIV Infection Causes * Dementia Due to HIV Infection Symptoms * Exams and Tests * Dementia Due to HIV Infection Treatment * Self-Care at Home * Medical Treatment * Next Steps * Follow-up * Prevention * Outlook * Support Groups and Counseling * For More Information * Web Links * Multimedia * Synonyms and Keywords Additional information includes: * HIV AIDS Myths and Facts Slideshow Pictures * Take the HIV/AIDS Quiz * AIDS Retrospective Slideshow Pictures | human immunodeficiency virus, dementia, infection | has parent organization: WebMD | nlx_143822 | SCR_004566 | 2026-08-08 12:04:45 | 0 | |||||||||
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Medtronic Resource Report Resource Website 1000+ mentions |
Medtronic (RRID:SCR_003988) | MDT | commercial organization | Medical technology company that develops and manufactures devices and therapies to treat more than 30 chronic diseases, including heart failure, Parkinson's disease, urinary incontinence, Down syndrome, obesity, chronic pain, spinal disorders, and diabetes. A Commercial healthcare organization for both patients and healthcare professionals. For professionals, it provides products, therapy and procedure solutions, and services. | medical device, cardiac, vascular, restorative therapy, neuromodulation, spine, heart, aorta, coronary, surgical technology | is related to: Kidney Health Initiative | Cardiac disease, Vascular disease, Diabetes, Neurological condition, Musculoskeletal condition, Heart failure, Parkinson's disease, Urinary incontinence, Down's syndrome, Obesity, Chronic pain, Spinal disorder | grid.481699.b, nlx_158399, Wikidata: Q30343856, SCR_010517, nlx_17750, grid.487289.8 | https://ror.org/04fhmmg24, https://ror.org/01y0zfy93 | SCR_003988 | Medtronic Inc. | 2026-08-08 12:04:44 | 2841 | ||||||
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COBALT: Constraint-based Multiple Alignment Tool Resource Report Resource Website 10+ mentions |
COBALT: Constraint-based Multiple Alignment Tool (RRID:SCR_004152) | computation service resource, software resource | COBALT is a multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and sequence similarity, using RPS-BLAST, BLASTP, and PHI-BLAST. Pairwise constraints are then incorporated into a progressive multiple alignment. A Linux executable for COBALT, and CDD and PROSITE data used is available at ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/cobalt/ COBALT has reasonable runtime performance and alignment accuracy comparable to or exceeding that of other tools for a broad range of problems. | gold standard | has parent organization: NCBI | PMID:17332019 | nlx_17358 | SCR_004152 | NCBI COBALT, NCBI Constraint-based Multiple Alignment Tool, Constraint-based Multiple Alignment Tool | 2026-08-08 12:04:44 | 10 | ||||||||
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Phelan-McDermid Syndrome International Registry Resource Report Resource Website |
Phelan-McDermid Syndrome International Registry (RRID:SCR_004230) | PMS International Registry | patient registry, people resource | International registry that consolidates information from individuals with Phelan-McDermid Syndrome into a single database, which will be utilized by researchers to understand Phelan-McDermid Syndrome better. In order to accelerate translational efforts (moving from basic laboratory research to meaningful health outcomes, such as therapies and treatments) related to Phelan-McDermid Syndrome, PMSF is funding the Phelan-McDermid Syndrome International Registry. The Registry is important for characterizing and understanding the syndrome better. Not only will the Registry provide valuable information for families and doctors to make the best care decisions possible, it will be important to help researchers decide what are the most important challenges to address. The Registry will also help scientists find out if there are any PMS patients who might be a good match for their research studies. Collecting information from PMS patients is very important, but protecting the privacy of people affected by PMS is also extremely important. In order to protect your privacy, Patient Crossroads (the company that designed the registry software) has designed many safeguards. Your child''s information will be de-identified so no one who looks at the data can identify you or your child. Your child''s information will be assigned a code. If a researcher is interested in learning more about your child, the researcher will ask the Patient Crossroads/PMSIR genetic counselor to contact you. A scientist will not be able to receive any identifying information about your child unless you give explicit consent for your child''s identity to be released to that researcher. BE PART OF OUR INTERNATIONAL REGISTRY The Registry will provide valuable information for families and doctors to make the best care decisions possible, and it will help researchers decide what are the most important challenges to address in PMS. Establishing the registry addresses two important scientific needs. First, scientists studying PMS need accurate, firsthand information to understand how PMS affects people. Second, scientists who are ready to start studies, such as those that test new treatments, will be able to access The Registry to identify people that may be eligible to participate in studies. In either case, your privacy is assured while the cause of research is advanced. While raw data about PMS will be available to scientists, they won''t have access to any identifying information about your child unless you agree to have your child''s identity released. | phelan-mcdermid syndrome, clinical trial, registry, therapy, treatment, child | has parent organization: Phelan-McDermid Syndrome Foundation | Phelan-McDermid Syndrome | Phelan-McDermid Syndrome Foundation | The community can contribute to this resource | nlx_143654 | SCR_004230 | 2026-08-08 12:04:44 | 0 | ||||||
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Code4Lib Journal Resource Report Resource Website |
Code4Lib Journal (RRID:SCR_004687) | Code4Lib Journal | data or information resource, narrative resource | This article is an appeal to technically-oriented library staff to initiate collaborative, bottom-up data-analysis efforts across their libraries. We discuss successful strategies used at North Carolina State University (NCSU) Libraries for initiating cross-departmental outreach for data-analysis work, as well as structuring and storing data, and disseminating findings. We present several specific examples of collaborative data-analysis projects undertaken at NCSU Libraries. Although the primary goal of the Code4Lib Journal is to provide practical solutions for technologists working in libraries, it has a lot to offer non-technologists. Technology affects all of the work that our libraries are doing and will define what the future of libraries will look like. | nlx_68308 | SCR_004687 | 2026-08-08 12:04:46 | 0 | |||||||||||
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NIF Literature Resource Report Resource Website |
NIF Literature (RRID:SCR_005401) | NIF Literature | data or information resource, narrative resource | Simultaneous search across multiple literature indices, including PubMed and Open Access literature, it is one of the core resources of NIF accessed through the NIF search interface. Literature results are displayed under the Literature tab. Features: * Facet by Year, Author, and / or Journal * Option to search open access literature only * Sort by relevance or year * Snippets from the full text of the paper are included in search results where search term was found * LinkOuts are now provided for some papers. These mean that someone associated a reagent, piece of data, note/blog, etc., with this specific publication. * Searching within sections of articles is now possible within the open access literature. For more info, see, http://neuinfo.org/about/release_notes_4.5.shtm#search. * Annotate papers. Any user can submit a public comment or annotation of an open access paper through the DOMEO tool. For more information, see http://neuinfo.org/about/release_notes_4.5.shtm#annotate | literature, journal, pubmed, pubmed central, biomedical, open access, abstract, linkout |
is related to: NeuroMorpho.Org is related to: NIF Web Services is related to: DOMEO is related to: PubMed is related to: PubMed Central has parent organization: Neuroscience Information Framework |
NIH Blueprint for Neuroscience Research | nlx_144510 | http://neuinfo.org/nif/nifgwt.html?query=*&tab=literature | SCR_005401 | Neuroscience Information Framework Literature | 2026-08-08 12:04:57 | 0 | ||||||
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Donate Life Louisiana Resource Report Resource Website |
Donate Life Louisiana (RRID:SCR_005800) | Donate Life Louisiana | patient registry, people resource | Donate Life Louisiana saves and enhances lives, and positively impacts the donor registry through education, awareness and leadership. Register to Become an Organ, Eye and Tissue Donor. | tissue donation, organ donor |
is related to: Louisiana Organ Procurement Agency - LOPA has parent organization: Donate Life America |
nlx_149402 | https://secure.organawareness.org/donatelifela.org/signup/ | SCR_005800 | 2026-08-08 12:04:47 | 0 | ||||||||
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American Institute of Stress Interviews Resource Report Resource Website |
American Institute of Stress Interviews (RRID:SCR_005420) | AIS Interviews | data or information resource, narrative resource | From time to time the Editor of Health and Stress interviews leaders in the field of stress management on a variety of topics for inclusion in our publications. Some interviews are listed below. For a complete list of interviews and content, you must be a member of AIS and access the Archives. | stress, human, interview | has parent organization: American Institute of Stress | nlx_144516 | SCR_005420 | 2026-08-08 12:04:57 | 0 | |||||||||
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NIGMS Computing Life Resource Report Resource Website |
NIGMS Computing Life (RRID:SCR_005850) | Computing Life | data or information resource, narrative resource | An NIGMS magazine that showcases the exciting ways that scientists are using the power of computers to expand our knowledge of biology and medicine. From text messaging friends to navigating city streets with GPS technology, we''re all living the computing life. But as we''ve upgraded from snail mail and compasses, so too have scientists. Computer advances now let researchers quickly search through DNA sequences to find gene variations that could lead to disease, simulate how flu might spread through your school and design three-dimensional animations of molecules that rival any video game. By teaming computers and biology, scientists can answer new and old questions that could offer insights into the fundamental processes that keep us alive and make us sick. This booklet introduces you to just some of the ways that physicists, biologists and even artists are computing life. Each section focuses on a different research problem, offers examples of current scientific projects and acquaints you with the people conducting the work. You can follow the links for online extras and other opportunities to learn aboutand get involved inthis exciting new interdisciplinary field. | computer, biology, medicine, human, health | has parent organization: National Institute of General Medical Sciences | NIGMS | nlx_149381 | SCR_005850 | 2026-08-08 12:04:58 | 0 | ||||||||
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National Ataxia Foundation Patient Registries Resource Report Resource Website |
National Ataxia Foundation Patient Registries (RRID:SCR_005341) | NAF Patient Registries | patient registry, people resource | A portal presenting the patient registries and databases of the National Ataxia Foundation. The registries include: Ataxia Patient Registry at CoRDS, Friedreich's Ataxia Research Alliance Patient Registry; the Fragile X Research Registry; Autosomal recessive spastic ataxia of Charlevoix-Saguenay ARSACS; and, Ataxia-Telangiectasia (A-T) Children's Project Family Data Base. | ataxia, friedreich's ataxia, fragile x syndrome, patient registry, patient database | has parent organization: National Ataxia Foundation | Ataxia, Friedreich's ataxia, Fragile X Syndrome | Public, Available to researchers | nlx_144397 | SCR_005341 | 2026-08-08 12:04:57 | 0 | |||||||
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BioToolBox Resource Report Resource Website 10+ mentions |
BioToolBox (RRID:SCR_015696) | software library, software resource, software toolkit | Tools for querying and analysis of genomic data. These libraries provide a useful interface for working with bioinformatic data. Many bioinformatic data analysis revolves around working with tables of information, including lists of genomic annotation (genes, promoters, etc.) or defined regions of interest (epigenetic enrichment, transcription factor binding sites, etc.). This library works with these tables and provides a set of common tools for working with them. Opening and saving common tab-delimited text formats Support for BED, GFF, VCF, narrowPeak files Scoring intervals with datasets from microarray and sequencing ChIPSeq, RNASeq, microarray expression Support for Bam, BigWig, BigBed, wig, and USeq data formats Intersection with other known annotation Works with any genomic annotation in GTF, GFF3, and UCSC formats The libraries provide a unified and integrated approach to analyses. In many cases, they provide an abstraction layer over a variety of different specialized BioPerl and related modules. Instead of writing numerous scripts specialized for each data format (wig, bigWig, Bam), one script can now work with any data format. | SCR_015696 | 2026-08-08 12:02:31 | 17 | |||||||||||||
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numerical-fitting Resource Report Resource Website |
numerical-fitting (RRID:SCR_016025) | software library, software resource, software toolkit | Software for a numerical computation library that performs numerical calculations. Used in ABCD study. | numerical, computation, library, calculation, performing, client, side, javascript, js, abcd |
is related to: University of California at San Diego; California; USA works with: ABCD Study |
NIDA U24 DA041123 | Free, Available for download | SCR_016025 | 2026-08-08 12:02:39 | 0 | |||||||||
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Computational Structural Biology Toolbox Resource Report Resource Website |
Computational Structural Biology Toolbox (RRID:SCR_016065) | CSB | software library, software resource, software toolkit | Software package as an application framework and a Python class library. It is designed for reading, storing and analyzing biomolecular structures in a variety of formats with rich support for statistical analyses. | software, library, Python, reading, storing, analysis, biomolecular, variety, statistical, analysis, bioinformatic |
is listed by: Debian is listed by: OMICtools |
Deutsche Forschungsgemeinschaft (DFG) grant HA 5918/1-1; Max Planck Society |
PMID:22942023 | Free, Available for download | OMICS_09827 | https://sources.debian.org/src/csb/ | SCR_016065 | Computational Structural Biology Toolbox (CSB), CSB Toolbox | 2026-08-08 12:02:31 | 0 |
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