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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SMART Resource Report Resource Website 5000+ mentions |
SMART (RRID:SCR_005026) | SMART | data analysis service, analysis service resource, web service, software resource, data access protocol, production service resource, service resource, database, data or information resource | Software tool for identification and annotation of genetically mobile domains and analysis of domain architectures. | extracellular, gene, genetic, genetically, genome, architecture, chromatin, domain, mobile, phyletic, protein, proteome, signaling, structure, taxonomic, tertiary, bio.tools, FASEB list |
is used by: Mutation Annotation and Genomic Interpretation is listed by: bio.tools is listed by: Debian is related to: Eukaryotic Linear Motif is related to: Conserved Domain Database is related to: GOTaxExplorer has parent organization: EMBL - Bork Group |
European Union | PMID:18978020 PMID:16381859 PMID:14681379 PMID:10592234 PMID:9847187 PMID:9600884 |
Free, Freely available | nif-0000-03471, biotools:smart | http://smart.embl-heidelberg.de/, https://bio.tools/smart | SCR_005026 | Simple Modular Architecture Research Tool | 2026-08-04 09:41:16 | 6760 | ||||
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GEUVADIS Resource Report Resource Website 1+ mentions |
GEUVADIS (RRID:SCR_000684) | GEUVADIS | portal, organization portal, data or information resource, consortium | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 6,2023. A European Medical Sequencing Consortium committed to gaining insights into the human genome and its role in health and medicine by sharing data, experience and expertise in high-throughput sequencing., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | genetic, variation, health, disease, medical, sequencing, high-throughput sequencing, human genome, genome, genomics, personalized medicine, genomic medicine | is listed by: OMICtools | European Union ; FP7 ; HEALTH |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01779, SCR_013706 | SCR_000684 | Genetic European Variation in Health and Disease - A European Medical Sequencing Consortium, GEUVADIS Consortium, Genetic European Variation in Health and Disease | 2026-08-04 09:40:12 | 1 | ||||||
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Cystic Fibrosis Mutation Database Resource Report Resource Website 10+ mentions |
Cystic Fibrosis Mutation Database (RRID:SCR_000685) | CFTR1, CFMDB | storage service resource, data repository, service resource, database, data or information resource | Collection of mutations in CFTR gene for international cystic fibrosis genetics research community. Provides up to date information about individual mutations in CFTR gene. All known CFTR mutations and sequence variants have been converted to standard nomenclature recommended by Human Genome Variation Society. On line process for submission of new mutations has been added.While they continue to ensure quality of data, they urge international community to give them feedback and suggestions. Clinical information in this database relates only to details of discovery of specific mutations. As part of 2010 upgrade, CFTR1 joined new project called CFTR2 - Clinical and Functional TRanslation of CFTR. Links to CFTR2 for many mutations in CFTR1 will provide up-to-date summaries of genotype-phenotype information from patient registries around the world. | Gene, genetic, amino acid, clinical, cystic fibrosis, mutation, phenotype, genotype-phenotype, genotype, dna sequence, mouse, sequence, genetic variation, polymorphism, translation, function, sequence variation, metadata standard, cftr2, FASEB list | is related to: CFTR2 | Cystic fibrosis | Free, Freely available | nif-0000-21105, r3d100012093 | https://doi.org/10.17616/R38356 | SCR_000685 | 2026-08-04 09:40:12 | 42 | ||||||
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MONARCH Initiative Resource Report Resource Website 10+ mentions |
MONARCH Initiative (RRID:SCR_000824) | Monarch | database, data or information resource | Repository of information about model organisms, in vitro models, genes, pathways, gene expression, protein and genetic interactions, orthology, disease, phenotypes, publications, and authors, and ability to navigate multi-scale spatial and temporal phenotypes across in vivo and in vitro model systems in context of genetic and genomic data, using semantics and statistics. Discovery system provides basic and clinical science researchers, informaticists, and medical professionals with integrated interface and set of discovery tools to reveal genetic basis of disease, facilitate hypothesis generation, and identify novel candidate drug targets. Database that indexes authoritative information on experimental models of disease from MGI, RGD and ZFIN. | disease, animal model, phenotype, model organism, in vitro model, gene, pathway, gene expression, protein interaction, genetic interaction, orthology, disease, publication, author, genetic, genomic, model system, genotype, drug, in vivo model |
uses: Animal QTLdb uses: Ensembl Variation uses: Human Phenotype Ontology is used by: NIF Data Federation is related to: Mouse Genome Informatics (MGI) is related to: Rat Genome Database (RGD) is related to: Zebrafish Information Network (ZFIN) is related to: openSNP is related to: Ancora is related to: PhenoGen Informatics is related to: Lifespan Observations Database has parent organization: Oregon Health and Science University; Oregon; USA is parent organization of: monarch-ontologies |
NIH Office of the Director R24 OD011883 | PMID:26269093 | Free, Freely available | r3d100011594, nlx_152525, SCR_001373, nlx_152748 | https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources, https://doi.org/10.17616/R31M09 | SCR_000824 | MONARCH Integrated Disease Model, MONARCH Integrated Disease Models View, MONARCH Disease Models View, The MONARCH Initiative | 2026-08-04 09:40:14 | 12 | ||||
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SIMM Resource Report Resource Website 1+ mentions |
SIMM (RRID:SCR_000849) | simulation software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 6th,2023. Gene dropping simulation software. The program is a gzip'ed tar archive and is designed to run under UNIX/Linux operating system. | gene, genetic, genomic, software | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154626 | http://mlemire.freeshell.org/software.html | SCR_000849 | SimM | 2026-08-04 09:40:15 | 2 | |||||||
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Benaroya Research Institute: Neurological Diseases Resource Report Resource Website |
Benaroya Research Institute: Neurological Diseases (RRID:SCR_001576) | BRI Neurological Diseases Research | portal, organization portal, data or information resource, department portal | BRI investigators study the molecular and genetic mechanisms which underlie some of the most devastating chronic neurological disorders, and conduct clinical trials for new innovative therapies. Neurological studies that are currently studied include Amyotrophic lateral sclerosis (ALS) or Lou Gehrig's Disease, Multiple Sclerosis, and Parkinson's Disease. | genetic, chronic, disease, disorder, neurological | has parent organization: Benaroya Research Institute | Amyotrophic Lateral Sclerosis, Multiple Sclerosis, Parkinson's disease | Free, Freely available | nif-0000-10379 | http://www.vmresearch.org/disease-information/disease-research/neurological-diseases | SCR_001576 | Benaroya Research Institute Neurological Diseases Research | 2026-08-04 09:40:25 | 0 | |||||
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MACH 1.0 Resource Report Resource Website 50+ mentions |
MACH 1.0 (RRID:SCR_001759) | data processing software, software application, software resource, data analysis software | A Markov Chain based software tool for haplotyping, genotype imputation and disease association analysis that can resolve long haplotypes or infer missing genotypes in samples of unrelated individuals. | gene, genetic, genomic, haplotype, genotype, genomic analysis, imaging genomics, imputation, snp, gene, haplotyping, sequence |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Mach2dat has parent organization: University of Michigan; Ann Arbor; USA |
PMID:21058334 PMID:19715440 |
Free | nlx_154202, OMICS_00064 | SCR_001759 | MArkov Chain Haplotyper MINIMAC, MArkov Chain Haplotyping | 2026-08-04 09:40:27 | 58 | |||||||
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MouseCyc Resource Report Resource Website 1+ mentions |
MouseCyc (RRID:SCR_001791) | MouseCyc | data analysis service, analysis service resource, production service resource, service resource, database, data or information resource | A manually curated database of both known and predicted metabolic pathways for the laboratory mouse. It has been integrated with genetic and genomic data for the laboratory mouse available from the Mouse Genome Informatics database and with pathway data from other organisms, including human. The database records for 1,060 genes in Mouse Genome Informatics (MGI) are linked directly to 294 pathways with 1,790 compounds and 1,122 enzymatic reactions in MouseCyc. (Aug. 2013) BLAST and other tools are available. The initial focus for the development of MouseCyc is on metabolism and includes such cell level processes as biosynthesis, degradation, energy production, and detoxification. MouseCyc differs from existing pathway databases and software tools because of the extent to which the pathway information in MouseCyc is integrated with the wealth of biological knowledge for the laboratory mouse that is available from the Mouse Genome Informatics (MGI) database. | energy production, biosynthesis, cell, cellular, degradation, detoxification, metabolism, mouse, physiological, enzymatic reaction, gene, disease, genome, metabolic pathway, pathway, compound, enzymatic reaction, protein, rna, reaction, blast, human, mammal, genetic, genomic |
is related to: Mouse Genome Informatics (MGI) is related to: Gene Ontology has parent organization: Jackson Laboratory |
NHGRI HG003622 | PMID:19682380 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10303 | SCR_001791 | MouseCyc database, Mouse Genome Informatics: MouseCyc database | 2026-08-04 09:40:28 | 9 | |||||
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Phelan-McDermid Syndrome Foundation Resource Report Resource Website 10+ mentions |
Phelan-McDermid Syndrome Foundation (RRID:SCR_001707) | PMSF | portal, funding resource, topical portal, disease-related portal, community building portal, data or information resource | The Phelan-McDermid Syndrome Foundation, established in 2002, is a 501(c)3 nonprofit group that provides support services for those who have family members affected by 22q13 Deletion Syndrome / Phelan-McDermid Syndrome. It also raises money to further awareness of the syndrome through research and sponsoring an international conference every two years that brings together families, researchers and therapists. The Foundation facilitates connections between families through networking, communications and support services. We also build alliances with other rare diseases groups to expand our reach and exposure. The syndrome, which affects families worldwide, is a rare genetic occurrence and is the result of a damaged or missing protein on the 22nd chromosome. Our Foundation works with researchers who are looking into the cause and possible cure for the syndrome. PMSF's grants and fellowships program is intended to encourage research projects that will advance the development of treatments and cures for PMS. Our mission is to bring together everyone affected by 22q13 Deletion Syndrome/Phelan-McDermid Syndrome to help them through the challenges they face every day and to raise awareness in the medical and research communities. | 22q13 deletion syndrome, phelan-mcdermid syndrome, rare disease, genetic, meeting, child, chromosome 22, treatment, therapy, research, grant, fellowship | is parent organization of: Phelan-McDermid Syndrome International Registry | Phelan-McDermid Syndrome | Free, Freely Available | nif-0000-10203 | SCR_001707 | 2026-08-04 09:40:27 | 31 | |||||||
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Living Links: Center for the Advanced Study of Ape and Human Evolution Resource Report Resource Website 1+ mentions |
Living Links: Center for the Advanced Study of Ape and Human Evolution (RRID:SCR_001776) | topical portal, portal, data or information resource | The primary mission of the Living Links Center is to study human evolution by investigating our close genetic, anatomical, cognitive, and behavioral similarities with great apes. The Living Links Center was established for primate studies that shed light on human behavioral evolution. It is an integrated part of the Yerkes National Primate Research Center, which is the nation's oldest and largest primate center. The Living Links Center is home to two socially housed groups of chimpanzees and two socially housed groups of capuchin monkeys. The research conducted in this center is broken down into four categories: - Chimpanzees: Chimpanzee research at the Living Links Center is conducted at the Yerkes Field Station, which is home to two socially housed chimpanzee groups known as FS1 and FS2. Each mixed gender group of 12 individuals lives in a large outdoor enclosure with wooden climbing structures and play objects attached to an indoor sleeping area. FS1 and FS2 can hear, but not see each other because their enclosures are ~200m apart and separated by a small hill. Chimpanzee research is conducted on a volunteer basis with members of each group. - Elephants: This newly found presence of mirror self-recognition in elephants, previously predicted due to their well-known social complexity, is thought to relate to empathetic tendencies and the ability to distinguish oneself from others. As a result of this study, the elephant now joins a cognitive elite among animals commensurate with its well-known complex social life and high level of intelligence. Although elephants are far more distantly related to us than the great apes, they seem to have evolved similar social and cognitive capacities making complex social systems and intelligence part of this picture. These parallels between humans and elephants suggest a convergent cognitive evolution possibly related to complex sociality and cooperation. - Capuchin Monkeys: Though there are several different species of capuchin monkey, the one most widely studied in captivity by Living Links, is the brown, or tufted, capuchin (Cebus apella). - Collaborative Projects: projects with collaborators around the world. Sponsors: This center is supported by the Yerkes National Primate Research Center. | elephant, evolution, gender, genetic, anatomical, animal, behavioral, capuchin monkey, cebus apella, chimpanzee, cognitive, convergent, great ape, human, primate, specie | has parent organization: Emory University; Georgia; USA | Free, Freely available | nif-0000-10280 | SCR_001776 | Living Links | 2026-08-04 09:40:28 | 2 | ||||||||
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SNAP - SNP Annotation and Proxy Search Resource Report Resource Website 100+ mentions |
SNAP - SNP Annotation and Proxy Search (RRID:SCR_002127) | SNAP | data analysis service, analysis service resource, software resource, software application, production service resource, service resource | A computer program and web-based service for the rapid retrieval of linkage disequilibrium proxy single nucleotide polymorphism (SNP) results given input of one or more query SNPs and based on empirical observations from the International HapMap Project and the 1000 Genomes Project. A series of filters allow users to optionally retrieve results that are limited to specific combinations of genotyping platforms, above specified pairwise r2 thresholds, or up to a maximum distance between query and proxy SNPs. SNAP can also generate linkage disequilibrium plots | gene, genetic, genomic, r, oracle, single nucleotide polymorphism, linkage disequilibrium, genotypeing array, physical distance, membership, proxy, plot |
is listed by: OMICtools is listed by: Genetic Analysis Software is related to: International HapMap Project is related to: 1000 Genomes: A Deep Catalog of Human Genetic Variation has parent organization: Broad Institute |
NHLBI N01-HC-65226 | PMID:18974171 | Free, Freely Available | OMICS_01927, nlx_154638 | http://www.broad.mit.edu/mpg/snap/ | SCR_002127 | SNAP (SNP Annotation and Proxy Search), SNAP 2, SNP Annotation and Proxy Search | 2026-08-04 09:40:34 | 144 | ||||
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GATK Resource Report Resource Website 10000+ mentions |
GATK (RRID:SCR_001876) | GATK | data processing software, data analysis software, software resource, software application, software library, software toolkit | A software package to analyze next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size. This software library makes writing efficient analysis tools using next-generation sequencing data very easy, and second it's a suite of tools for working with human medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner. (entry from Genetic Analysis Software) | gene, genetic, genomic, next-generation resequencing, bio.tools |
is used by: Halvade Somatic is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is listed by: SoftCite is related to: SnpEff is related to: GATK HaplotypeCaller is related to: GATK VariantFiltration has parent organization: Broad Institute |
PMID:21478889 | Free, Available for download, Freely available | nlx_154324, OMICS_00286, biotools:gatk | http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit, https://bio.tools/gatk | SCR_001876 | Genome Analysis ToolKit | 2026-08-04 09:40:29 | 16663 | |||||
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Center for Disease Control and Prevention: Genetic Testing Reference Materials Coordination Program Resource Report Resource Website 1+ mentions |
Center for Disease Control and Prevention: Genetic Testing Reference Materials Coordination Program (RRID:SCR_013029) | topical portal, portal, data or information resource | The goal of the Genetic Testing Reference Materials Coordination Program (GeT-RM) is to coordinate a self-sustaining community process to improve the availability of appropriate and characterized reference materials for: Quality control (QC), Proficiency testing (PT), Test development & validation, Research. The purpose of this program is: - To help the genetic testing community obtain appropriate and characterized reference materials - To facilitate and coordinate information exchange between users and providers of QC and reference materials - To coordinate efforts for contribution, development, characterization and distribution of reference materials for genetic testing Get-RM provides information about cell lines, DNA, and other kinds of materials that could be used as reference materials for molecular genetic testing. Some of these materials have been characterized by the GeT-RM program and can be divided into three categories: - Genetic Inherited Disease & Pharmacogenetics This section includes information about cell lines, DNA, and other samples that can be used as reference materials for various inherited diseases (including cystic fibrosis, fragile X, Huntington disease, and Ashkenazi Jewish-related diseases), pharmacogenetic loci, and biochemical genetics. The GeT-RM program has confirmed the genotype of many of the genomic DNA samples through testing in multiple clinical genetic laboratories. - Molecular Oncology This section includes information about commercially available cell lines, DNA, and other kinds of materials that could be used as reference materials for various types of cancers, including leukemia/lymphoma and solid tumors. - Infectious Disease This section includes information about commercially available cell lines, DNA, and other kinds of materials that could be used as reference materials for various infectious disease pathogens including viruses, bacteria, and protozoa. | fragile x, genetic, genetics, genetic testing, ashkenazi, bacteria, biochemical, cancer, cell, cell line, coordination, cystic fibrosis, development, disease, dna, genomic, genotype, huntington disease, inherited, jewish, leukemia, locus, lymphoma, material, molecular, oncology, pathogen, pharmacogentic, protozoa, quality, solid, testing, tumor, virus | has parent organization: Centers for Disease Control and Prevention | nif-0000-10189 | SCR_013029 | CDC GeT-RM Program | 2026-08-04 09:43:07 | 3 | |||||||||
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Human Genome Project Information Resource Report Resource Website 50+ mentions |
Human Genome Project Information (RRID:SCR_013028) | portal, funding resource, video resource, topical portal, training material, narrative resource, slide, data or information resource | This resource gives information about the U.S. Human Genome Project, which was was a 13-year effort to to discover all the estimated 20,000-25,000 human genes and make them accessible for further biological study. The primary project goals were to: - identify all the approximately 20,000-25,000 genes in human DNA, - determine the sequences of the 3 billion chemical base pairs that make up human DNA, - store this information in databases, - improve tools for data analysis, - transfer related technologies to the private sector, and - address the ethical, legal, and social issues (ELSI) that may arise from the project. To help achieve these goals, researchers also studied the genetic makeup of several nonhuman organisms. These include the common human gut bacterium Escherichia coli, the fruit fly, and the laboratory mouse. These parallel studies helped to develop technology and interpret human gene function. Sponsors: The DOE Human Genome Program and the NIH National Human Genome Research Institute (NHGRI) together sponsored the U.S. Human Genome Project. | escherichia coli, fruit fly, function, gene, genome, genetic, bacterium, base pair, biological, dna, human, mouse, sequence, FASEB list |
has parent organization: National Institutes of Health has parent organization: United States Department of Energy |
nif-0000-10252 | SCR_013028 | HGP | 2026-08-04 09:43:07 | 59 | |||||||||
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SIFT Resource Report Resource Website 10000+ mentions |
SIFT (RRID:SCR_012813) | SIFT | data analysis service, source code, analysis service resource, web service, software resource, data access protocol, production service resource, service resource | Data analysis service to predict whether an amino acid substitution affects protein function based on sequence homology and the physical properties of amino acids. SIFT can be applied to naturally occurring nonsynonymous polymorphisms and laboratory-induced missense mutations. (entry from Genetic Analysis Software) Web service is also available. | gene, genetic, genomic, amino acid, substitution, protein function, coding region, single nucleotide variant, coding indel, deletion, insertion, sequence, protein, bio.tools |
is listed by: OMICtools is listed by: Genetic Analysis Software is listed by: Debian is listed by: bio.tools is listed by: SoftCite is related to: SIFT 4G has parent organization: Genome Institute of Singapore; Singapore; Singapore has parent organization: J. Craig Venter Institute |
Agency for Science Technology and Research ; NIGMS GM29009 |
PMID:19561590 PMID:12824425 PMID:11337480 DOI:10.1038/nprot.2009.86 |
Non-commercial | biotools:sift, OMICS_00137, nlx_154618 | http://sift.jcvi.org/, https://bio.tools/sift, https://sources.debian.org/src/sift/ | http://sift.bii.a-star.edu.sg/SIFT.html | SCR_012813 | Sorting Intolerant From Tolerant | 2026-08-04 09:43:05 | 10223 | |||
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eQTL Visualization Tool Resource Report Resource Website 1+ mentions |
eQTL Visualization Tool (RRID:SCR_013413) | data processing software, data visualization software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 1,2023. eQTL Explorer was developed as a computational resource to visualize and explore data from combined genome-wide expression and linkage studies is essential for the development of testable hypotheses. This visualization tool stores expression profiles, linkage data and information from external sources in a relational database and enables simultaneous visualization and intuitive interpretation of the combined data via a Java graphical interface. eQTL Explorer also provides a new and powerful tool to interrogate these very large and complex datasets. eQTLexplorer allows users to mine and understand data from a repository of genetical genomics experiments. It will graphically display eQTL information based on a certain number of selection criteria, including: tissue type, p-value, cis/trans, probeset Affymetrix id and PQTL type. Sponsors: This work was funded by the MRC Clinical Sciences Centre and the Wellcome Trust programme for Cardiovascular Functional Genomics. | experiment, explore, expression, genome, genetic, genetical, cis, computational, data, database, genomic, grafical, interface, linkage, mine, pqtl type, p-value, repository, tissue, tissue type, trans, visualization, visualize | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10222 | SCR_013413 | eQTLexplorer | 2026-08-04 09:43:12 | 1 | |||||||||
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Genetic Analysis Software Resource Report Resource Website 1+ mentions |
Genetic Analysis Software (RRID:SCR_013155) | GAS | data set, software resource, catalog, database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 4th,2023. Listing of computer software for the gene mapping community on the following topics: genetic linkage analysis for human pedigree data, QTL analysis for animal/plant breeding data, genetic marker ordering, genetic association analysis, haplotype construction, pedigree drawing, and population genetics. The inclusion of a program should not be interpreted as an endorsement to that program from us. In the last few years, new technology produces new types of genetic data, and the scope of genetic analyses change dramatically. It is no longer obvious whether a program should be included or excluded from this list. Topics such as next-generation-sequencing (NGS), gene expression, genomics annotation, etc. can all be relevant to a genetic study, yet be specialized topics by themselves. Though programs on variance calling from NSG can be in, those can sequence alignment might be out; programs on eQTL can be in, those on differential expression might be out. This page was created by Dr. Wentian Li, when he was at Columbia University (1995-1996). It was later moved to Rockefeller University (1996-2002), and now takes its new home at North Shore LIJ Research Institute (2002-now). The present copy is maintained by Jurg Ott as a single file. More than 240 programs have been listed by December 2004, more than 350 programs by August 2005, close to 400 programs by December 2006, and close to 480 programs by November 2008, and over 600 programs by October 2012. A version of the searchable database was developed by Zhiliang Hu of Iowa State University, and a recent round of updating was assisted by Wei JIANG of Harbin Medical School. Some earlier software can be downloaded from EBI: ftp://ftp.ebi.ac.uk/pub/software/linkage_and_mapping/ (Linkage and Mapping Software Repository), and http://genamics.com/software/index.htm may contain archived copy of some programs. | gene mapping, gene, genetic, genomic, model, modeling, software program, genetic linkage analysis, qtl analysis, genetic marker order, genetic association analysis, haplotype construction, pedigree drawing, population genetics |
is used by: NIF Data Federation lists: EM-DECODER lists: ENTROPY BLOCKER lists: SOAP lists: ADEGENET lists: 2LD lists: SQTL lists: POLYMORPHISM lists: EDAC lists: FEST lists: GENEHUNTER SAD lists: COMDS lists: CHAPLIN lists: CRIMAP lists: DCHIP LINKAGE lists: FLOSS lists: HAP 1 lists: HAPSCOPE lists: LDB/LDB+ lists: LOCUSMAP lists: MRH lists: PEDIGREE-VISUALIZER lists: PEDPHASE lists: QTL CAFE lists: RHMAPPER lists: R/GC, R/GCF lists: R/GWAPOWER lists: R/WEIGHTED FDR lists: SIMM lists: SOLAR lists: TDTHAP lists: HWESTRATA lists: TDT-PC lists: EQTL EXPLORER lists: GAS2 lists: LDMET lists: LAMBDAA lists: EIGENSOFT/EIGENSTRAT lists: Happy lists: LAMP lists: CLUSTAG lists: OSA lists: SIMIBD lists: SNPSTATS lists: Haploview lists: QGene lists: PAWE-3D lists: MILD lists: PEDPLOT lists: GS-EM lists: PEDSCRIPT lists: Multipoint Identical-by-descent Method lists: PARENTE lists: Integrated Software lists: PEDRAW/WPEDRAW lists: POPDIST lists: TDTASP lists: TDTPOWER lists: TDT/S-TDT lists: HAPLOBLOCKFINDER lists: HAPMIXMAP lists: Genotype-IBD Sharing Test lists: LDGROUP lists: LDHAT lists: LDMAP lists: LDHEATMAP lists: LDSELECT lists: LINKAGE lists: LDSUPPORT lists: FASTLINK lists: LINKAGE - CEPH lists: LSP lists: Whap lists: TREESCAN lists: Graphical Overview of Linkage Disequilibrium lists: MAIA lists: MULTIMAP lists: R/ADEGENET lists: R/ENTROPY BLOCKER lists: BEAM lists: BMAPBUILDER lists: POPGEN lists: RTDT lists: R/SPECTRAL-GEM lists: R/STEPWISE lists: HAPLOCLUSTERS lists: TKMAP lists: CLUMP lists: FAMOZ lists: INTEGRAYEDMAP lists: SIBMED lists: POOLSCORE lists: LDA lists: LAPSTRUCT lists: BETA lists: ALTree lists: TRANSMIT lists: ETDT lists: R/TDTHAP lists: RVTESTS lists: S lists: ET-TDT lists: ILR lists: MAPCREATOR lists: MAPMAKER/SIBS lists: MAP MANAGER QT lists: MGA-MAPF2 lists: Pedigree-Draw lists: FASTMAP (1) lists: ASPEX lists: PEDJAVA lists: PEDPEEL lists: SIMCOAL lists: SNPHAP lists: SNPHARVESTER lists: SNP-HWE lists: TAGSNP lists: FASTMAP (2) lists: FASTSLINK lists: GASP lists: GENOGRAM-MAKER lists: GENEHUNTER++SAD lists: GENEPI.JAR lists: BDGEN lists: TLINKAGE lists: GENOME lists: EASYPOP lists: GENOMESIMLA lists: TRAP lists: CARTHAGENE lists: ACT lists: ADMIXMAP lists: 2DMAP lists: ALBERT lists: 2SNP lists: AGEINF lists: ALLASS lists: PEDIGREEQUERY lists: PATH lists: MULTIQTL lists: SPERMSEG lists: FASTER lists: Platypus lists: KIN lists: SNP ASSISTANT lists: GRONLOD lists: COMBIN lists: ARLEQUIN lists: SEGPATH lists: JENTI lists: SCOUT lists: HAPLOREC lists: UNPHASED lists: POWER lists: HAPLO 1 lists: HAPLO 2 lists: CHIP2SPELL lists: MAP MANAGER QTX lists: G-MENDEL lists: ASSOCIATIONVIEWER lists: WHICHRUN lists: GENECLASS lists: MAREYMAP lists: HELIXTREE lists: SVCC lists: GENEHUNTER-MODSCORE lists: FAMHAP lists: BAMA lists: WEBQTL lists: HAPLOVISUAL lists: CASPAR lists: GC/GCF lists: MIXSCORE lists: POWQ lists: QTLNetwork lists: SIMULAPLOT lists: SQTDT/SPDT lists: FESTA lists: BOTTLENECK lists: PAP lists: QUANTO lists: R/QTL lists: SNPEM lists: GENEPOOL lists: EPISTACY lists: VITESSE lists: LEA lists: DMAP lists: MOSCPHASER lists: UMAKE lists: TDT-AE lists: HAPLOWSER lists: STEPC lists: RECORD lists: QUTIE lists: R/COMPOSITELD lists: FINESSE lists: R/EHP lists: R/HCLUST lists: STEPWISE lists: genehunter-imprinting lists: PBAT lists: R/BARS lists: HARDY lists: R/ARP.GEE lists: R/COVIBD lists: STRAT lists: TREELD lists: TUNA lists: SIBSIM lists: IGG lists: ALLELIX lists: ALLEGRO lists: ALOHOMORA lists: ALP lists: AMELIA lists: ANALYZE lists: ANCESTRY lists: APE lists: BARS lists: APL-OSA lists: APM lists: ARIEL lists: GENOMIZER lists: ASP/ASPSHARE lists: BIMBAM lists: BIOIDE lists: BIOLAD-DB lists: BLADE lists: BLOCK lists: BOOLD lists: BOOSTRAPPER lists: BPPH lists: BQTL lists: DNABASER lists: Calculator for Association with Two Stage design lists: CC-QLS lists: CCRAVAT lists: CCREL lists: CEPH2CRI lists: CEPH2MAP lists: EVOKER lists: CFC lists: CHECKHET lists: MATLINK lists: CHECKMATRIX lists: CHIAMO lists: CHROMOSCAN lists: CHROMOSEG lists: COPE lists: HCLUST lists: COVIBD lists: CRIMAP-PVM lists: CROSSFIND lists: DGENE lists: EHPLUS lists: DHSMAP lists: DISENTANGLER lists: MAKEPED lists: DOLINK lists: DPPH lists: GREGOR lists: EAGLET lists: EASYLINKAGE/EASYLINKAGE-PLUS lists: EH lists: EHAP lists: EHP lists: EMLD lists: EPDT lists: ERPA lists: EXOMEPICKS lists: R/META lists: FASTEHPLUS lists: FASTLINK lists: FBAT lists: FINETTI lists: FIRSTORD lists: FISHER lists: GAIA lists: GAP lists: GAS lists: GCHAP lists: GDA lists: GEMS lists: GENECOUNTING lists: GENEFINDER lists: GENEHUNTER lists: GENEHUNTER-IMPRINTING lists: GENEHUNTER-PLUS lists: GENEPOP lists: GENERECON lists: GENESPRING GT lists: GENIE lists: GENETIC POWER CALCULATOR lists: GENETSIM lists: GENOOM lists: GENEVAR lists: GENEWEAVER lists: GENOCHECK lists: GENOPROOF lists: GENTOOLS lists: GEST lists: GEVALT lists: GGT lists: GHOST lists: GLIDERS lists: GLUE lists: GMA lists: GMCHECK lists: GSMA lists: GTOOL lists: GWAPOWER lists: HAP 2 lists: HAPAR lists: HAPASSOC lists: HAPBLOCK lists: HAPGEN lists: HAPINFERX lists: HAPLOBLOCK lists: HAPLOBUILD lists: HAPLOPOOL lists: HAPLORE lists: HAPLO.STAT lists: HAPLOT lists: HAPLOTTER lists: TWOLOC lists: HAPLOTYPE ESTIMATION lists: HAPLOTYPER lists: HAPMINER lists: HAP-SAMPLE lists: HAPSIMU lists: HIT lists: HOMOG/HOMOGM lists: HOTSPOTTER lists: HPLUS lists: HS-TDT lists: HTR lists: HTSNPER lists: MDR-PDT lists: INTERSNP lists: IMPUTE lists: NOPAR lists: JLIN lists: JOINMAP lists: JPSGCS lists: J/QTL lists: KING lists: LAMARC lists: LINKAGE-IMPRINT lists: LINKBASE lists: LIPED lists: LNKTOCRI lists: LOCUSZOOM lists: LOGINSERM ESTIHAPLO lists: LOH-LINKAGE lists: LOKI lists: LOT lists: L-POP lists: LRP lists: LRTAE lists: LTSOFT lists: MADMAPPER lists: Marker And Gene Interpolation and Correlation lists: MALDSOFT lists: MAMA lists: MANTEL-STRUCT lists: MAP/MAP+/MAP+H/MAP2000 lists: MAPCHART lists: MIDAS lists: MAPDISTO lists: MAPDRAW lists: MAPINSPECT lists: MAPL lists: MARGARITA lists: MDBLOCKS lists: MAPMAKER/EXP lists: MAPMAKER/HOMOZ lists: MAPMAKER/QTL lists: MAPQTL lists: MCQTL lists: MEGA2 lists: MEGASNPHUNTER lists: MENDEL lists: MERLIN lists: MFLINK lists: MINIMAC lists: MINSAGE lists: MITPENE lists: MKGST lists: MMDRAWER lists: MLBGH lists: MLD lists: MLR-TAGGING lists: PEDMANAGER lists: SAGE lists: MPDA lists: MULTIDISEQ lists: MULTIMAPPER lists: MULTIMAPPER/OUTBRED lists: MULTIPOPTAGSELECT lists: MULTISIM lists: MUTAGENESYS lists: NOCOM lists: NUCULAR lists: ONEMAP lists: OSIRIS lists: P ACT lists: PASS PEDIGREE lists: PAWE lists: PDA lists: PDPSYS lists: PDT lists: PED lists: PEDAGREE lists: PEDCHECK lists: PEDSTATS lists: PEDSYS lists: PEDVIZAPI lists: PEER lists: PHASE lists: PLABSIM lists: PL-EM lists: POINTER lists: POOL STR lists: POWERMARKER lists: POWERTRIM lists: POWTEST lists: PREPLINK lists: PREST lists: PROBMAX lists: PROC QTL lists: PROFILER lists: PRT lists: PSAT lists: SAS/GENETICS lists: PSEUDO lists: PSEUDOMARKER lists: PSEUDOMARKER.M lists: R/LDHEATMAP lists: QTL-ALL lists: QTL Cartographer lists: QTL EXPRESS lists: QU-GENE lists: RISCALW lists: RC-TDT lists: REAPER lists: RELATIVE lists: RELATIVEFINDER lists: RELCHECK lists: RELPAIR lists: RELTYPE lists: RHMAP lists: ROMPREV lists: ROSATTA SYLLEGO SYSTEM lists: R/GAP lists: R/HAPASSOC lists: R/IBDREG lists: R/LAPSTRUCT lists: R/LDGROUP lists: R/LUCA lists: R/METASIM lists: R/ONEMAP lists: R/PIAGE lists: R/POOLSCORE lists: R/POPGEN lists: R/QTLBIM lists: R/SNP.PLOTTER lists: SDMINP lists: SELSIM lists: SEQUENCE LD/SEQUENCE LDHOT lists: SIBERROR lists: SIBLINK lists: SIB-PAIR lists: SILCLOD lists: SIMLA lists: SNP CHART lists: SIMLINK lists: SIMPED lists: SIMPLE lists: SIMULA lists: SIMULATE lists: SIMUPOP lists: SIMWALK lists: START lists: SKAT lists: SLINK lists: SMOOTH lists: Suite of Nucleotide Analysis Programs lists: SNAP 3 lists: SNPALYZE lists: SNPFILE lists: SNPLINK lists: SNPP lists: SNP.PLOTTER lists: SNPTEST lists: SPAM lists: SPECTRAL-GEM lists: SPERM lists: SPIP lists: SPLAT lists: TAGSTER lists: SPLINK lists: SSAHASNP lists: SUMSTAT lists: SUP lists: SWEEP lists: TAGGER lists: TFPGA lists: TREESELECT lists: UNKNOWN lists: UTIL lists: WHAIT lists: ZAPLO lists: HAPBLOCK 2 lists: PLABQTL lists: TASSEL lists: MCLEEPS lists: SASGENE lists: PANGAEA lists: TOMCAT lists: SCORE-SEQ lists: SASQUANT lists: QMSIM lists: PIAGE lists: PEDPACK lists: INSEGT lists: IBDREG lists: GLFSINGLE/GLFTRIO/GLFMULTIPLES lists: GGSD lists: ECLIPSE lists: CHROMSCAN lists: COMPOSITELD lists: BOOST lists: ARP.GEE lists: BOREL lists: GASSOC lists: MENDELSOFT lists: PLINK/SEQ lists: POLYPHEN lists: SPREG lists: MOLKIN lists: PRESTO: Genetic Association Analysis Software lists: ENDOG lists: BEAGLECALL lists: GWASELECT lists: HEGESMA lists: SNIPPEEP lists: TAGIMPUTE lists: SNPMSTAT lists: SNP HITLINK lists: MECPM lists: R/FEST lists: MAOS lists: SUPERLINK lists: PEDFIDDLER lists: VG lists: HAPSTAT lists: QTDT lists: GRIDQTL lists: VH lists: R/QTLDESIGN lists: PyPop lists: ANTMAP lists: MDR lists: WEIGHTED FDR lists: THESIAS lists: DMLE lists: SGS lists: BAYESFST lists: HWMET lists: GRR lists: AUTOSCAN lists: TRIMHAP lists: ILLUMINUS lists: PELICAN lists: HAPLOPAINTER lists: HOMOZYGOSITYMAPPER lists: GERMLINE lists: PLINK lists: MACH 1.0 lists: BEAGLE lists: BIRDSUITE lists: BREAKDANCER lists: CAROL lists: CASAVA lists: CYRILLIC lists: DINDEL lists: GenABEL lists: GATK lists: PEDIGRAPH lists: MADELINE lists: METAL lists: OLORIN lists: PEDHUNTER lists: POLYMUTT lists: SAMTOOLS lists: SNAP - SNP Annotation and Proxy Search lists: STRUCTURE lists: SVA lists: SYZYGY lists: VAAST lists: Hapmix lists: Ancestrymap lists: Hmmer lists: PROGENY lists: VarScan lists: MORGAN lists: CMAP lists: SIMHAP lists: SIFT lists: ANNOVAR lists: Body Mass Index Calculator lists: PolyPhen: Polymorphism Phenotyping has parent organization: Feinstein Institute for Medical Research has parent organization: Iowa State University; Iowa; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-33506 | http://lab.rockefeller.edu/ott/geneticsoftware | http://linkage.rockefeller.edu/soft/ | SCR_013155 | An Alphabetic List of Genetic Analysis Software | 2026-08-04 09:43:09 | 9 | |||||
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ARP.GEE Resource Report Resource Website 1+ mentions |
ARP.GEE (RRID:SCR_013134) | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 24,2023. Software application that simultaneously estimates a trait-locus position and its genetic effects for affected relative pairs (ARP) by one of two methods. Either allow a different trait-locus effect for each ARP type, or constrain the trait-locus effects according to the marginal effect of a single susceptibility locus. We include a goodness of fit statistic for the constrained model. (entry from Genetic Analysis Software) | gene, genetic, genomic, r/s-plus | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154206, nlx_154232, SCR_009108 | SCR_013134 | R/ARP.GEE | 2026-08-04 09:43:08 | 7 | ||||||||
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PolyPhen: Polymorphism Phenotyping Resource Report Resource Website 1000+ mentions |
PolyPhen: Polymorphism Phenotyping (RRID:SCR_013189) | PolyPhen, PolyPhen-2, POLYPHEN | simulation software, data processing software, data analysis software, software resource, software application | Software tool which predicts possible impact of amino acid substitution on structure and function of human protein using straightforward physical and comparative considerations. PolyPhen-2 is new development of PolyPhen tool for annotating coding nonsynonymous SNPs. | annotate, nonsynonymous, SNP, predict, coding, damaging, effect, missense, mutation, sequence, variant, phenotype, genetic, disease, exon, protein, coding, fraction, genome, bio.tools |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: bio.tools is related to: OMICtools has parent organization: Harvard University; Cambridge; United States |
PMID:20354512 PMID:23315928 |
SCR_013200, OMICS_00136, nlx_154540, nif-0000-21329, biotools:polyphen, SCR_013238 | https://bio.tools/polyphen | http://www.bork.embl-heidelberg.de/PolyPhen/ | SCR_013189 | PolyPhen, POLYPHEN, PolyPhen-2, Polymorphism Phenotyping, Polymorphism Phenotyping v2 | 2026-08-04 09:43:09 | 4151 | |||||
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AASK Clinical Trial and Cohort Study Resource Report Resource Website |
AASK Clinical Trial and Cohort Study (RRID:SCR_006985) | AASK Cohort Study | resource, portal, topical portal, research forum portal, disease-related portal, clinical trial, data or information resource | Clinical trial investigating whether a specific class of antihypertensive drugs (beta-adrenergic blockers, calcium channel blockers, or angiotensin converting enzyme inhibitors) and/or the level of blood pressure would influence progression of hypertensive kidney disease in African Americans. The initiative consisting of 21 clinical centers and a data-coordinating center is followed by a Continuation of AASK Cohort Study to investigate the environmental, socio-economic, genetic, physiologic, and other co-morbid factors that influence progression of kidney disease in a well-characterized cohort of African Americans with hypertensive kidney disease. Only patients who were previously in the randomized trial are eligible for the cohort study. A significant discovery was made in the treatment strategy for slowing kidney disease caused by hypertension. Angiotensin-converting enzyme (ACE) inhibitors, compared with calcium channel blockers, were found to slow kidney disease progression by 36 percent, and they drastically reduced the risk of kidney failure by 48 percent in patients who had at least one gram of protein in the urine, a sign of kidney failure. ACE inhibitors have been the preferred treatment for hypertension caused by diabetes since 1994; however, calcium channel blockers have been particularly effective in controlling blood pressure in African Americans. The AASK study now recommends ACE inhibitors to protect the kidneys from the damaging effects of hypertension. The Continuation of AASK Cohort Study will be followed at the clinical centers. The patients will be provided with the usual clinical care given to all such patients at the respective centers. Baseline demographic information, selected laboratory tests, and other studies are being obtained at the initiation of the Continuation Study. The patients will be seen quarterly at the centers, and some selected studies done at these visits. Samples will be obtained and stored for additional studies and analyses at a later date. | african american, blood pressure, beta-adrenergic blocker, calcium channel blocker, angiotensin converting enzyme inhibitor, environment, socio-economic, genetic, physiology, co-morbid factor, gene, adult human, antihypertensive drug, clinical, treatment, longitudinal, demographics, laboratory test, biospecimen, biomaterial supply resource |
is listed by: One Mind Biospecimen Bank Listing is related to: NIDDK Information Network (dkNET) is related to: Chronic Renal Insufficiency Cohort Study |
End-stage renal disease, Kidney failure, Kidney disease, Hypertension, Hypertensive kidney disease | NIDDK | nlx_152750 | SCR_006985 | African American Study of Kidney Disease and Hypertension (AASK) Clinical Trial and Cohort Study, African American Study of Kidney Disease and Hypertension Clinical Trial and Cohort Study, Continuation of AASK Cohort Study, African American Study of Kidney Disease and Hypertension | 2026-08-04 09:41:43 | 0 |
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