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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Colin 3T/7T High-resolution Atlas
 
Resource Report
Resource Website
Colin 3T/7T High-resolution Atlas (RRID:SCR_000160) Colin 3T/7T High-resolution Atlas atlas, data or information resource High-field extension of the Colin27 single-subject atlas with additional high-resolution, quantitative, averaged scans at both 3T and 7T. nifti-1, magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) Free, Available for download, Freely available nlx_157729 SCR_000160 Colin 3T / 7T High-resolution Atlas 2026-09-19 12:56:25 0
National Disease Research Interchange
 
Resource Report
Resource Website
100+ mentions
Rating or validation data
National Disease Research Interchange (RRID:SCR_000550) NDRI biomaterial supply resource, material resource, tissue bank NDRI is a Not-For-Profit (501c3) Corporation dedicated to providing the highest quality human biomaterials for research. NDRI makes it easy for researchers to get the human tissues and organs they need, prepared, preserved and shipped precisely according to their specific scientific protocols, as quickly as possible, and in the largest available quantities. NDRI provides researchers with protocol specific human neurological tissues such as brain stem, spinal cord, and basal ganglia, among others. In addition to control specimens, NDRI recovers tissues from donors with a variety of diseases, including Down syndrome, Parkinsons disease, Alzheimers disease, schizophrenia, and dementia. Through the NDRI 24/7 referral and procurement system, research consented biospecimens can be provided from low post mortem interval donors preserved at 4ºC, frozen or snap frozen, fixed, paraffin embedded, or as unstained slides. neurological, tissue, organ, cell, neurological tissue, brainstem, spinal cord, basal ganglia, cerebral cortex, hippocampus, frozen, snap frozen, fixed, paraffin embedded, unstained slide, disease, down syndrome, parkinson's disease, alzheimer's disease, schizophrenia, dementia, control, normal, catalog is listed by: One Mind Biospecimen Bank Listing
is listed by: Multiple Sclerosis Discovery Forum
is listed by: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB)
is parent organization of: Human Tissue and Organ for Research Resource (HTORR)
is parent organization of: Human Biological Data Interchange
is parent organization of: NDRI Dorsal Root Ganglia Program
Down syndrome, Parkinson's disease, Alzheimer's disease, Schizophrenia, Dementia NIH OD011158 Public: NDRI is a nonprofit organization that procures and distributes normal and diseased human biomaterials to biomedical researchers in academia, government, and industry. nlx_99804 SCR_000550 2026-09-19 12:56:26 192
Iowa Donor Network
 
Resource Report
Resource Website
Iowa Donor Network (RRID:SCR_000548) IDN biomaterial supply resource, material resource, tissue bank A nonprofit organ procurement agency based in Iowa. The organization facilitates both organ and tissue recovery in cooperation with local hospitals. The network also works to support public education, hospital development and family support services. donate, bank, tissue, eye, organ, hospital, education is listed by: One Mind Biospecimen Bank Listing nlx_96684 SCR_000548 2026-09-19 12:56:26 0
Malaysian Tissue Bank
 
Resource Report
Resource Website
Malaysian Tissue Bank (RRID:SCR_000331) biomaterial supply resource, material resource, tissue bank THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. THIS RESOURCE IS NO LONGER IN SERVICE nlx_67604 SCR_000331 2026-09-19 12:56:26 0
Bangkok Biomaterial Center
 
Resource Report
Resource Website
Bangkok Biomaterial Center (RRID:SCR_000328) biomaterial supply resource, material resource, tissue bank THIS RESOURCE IS NO LONGER IN SERVICE, documented May 9, 2017. THIS RESOURCE IS NO LONGER IN SERVICE nlx_54103 SCR_000328 2026-09-19 12:56:26 0
Lifespan Observations Database
 
Resource Report
Resource Website
1+ mentions
Lifespan Observations Database (RRID:SCR_001609) Lifespan Observations Database data or information resource, database Database that collects published lifespan data across multiple species. The entire database is available for download in various formats including XML, YAML and CSV. lifespan, phenotype, intervention, gene, compound, publication is used by: NIF Data Federation
is used by: Aging Portal
is related to: MONARCH Initiative
has parent organization: Sageweb
Aging THIS RESOURCE IS NO LONGER IN SERVICE nlx_153873 http://sageweb.org/lifespandb SCR_001609 Sageweb Lifespan Observation Database 2026-09-19 12:56:31 1
MirSNP
 
Resource Report
Resource Website
50+ mentions
MirSNP (RRID:SCR_001629) MirSNP data or information resource, database Database of human SNPs in predicted miRNA-mRNA binding sites, based on information from dbSNP135 and mirBASE18. MirSNP is highly sensitive and covers most experiments confirmed SNPs that affect miRNA function. MirSNP may be combined with researchers' own GWAS or eQTL positive data sets to identify the putative miRNA-related SNPs from traits/diseases associated variants. They aim to update the MirSNP database as new versions of mirBASE and dbSNP database become available. single nucleotide polymorphism, mirna, genome-wide association study, expression quantitative trait locus, mirna-mrna binding site, trait, disease, variant, gene, mrna, FASEB list has parent organization: Peking University; Beijing; China National Natural Science Foundation of China 81071087;
National Natural Science Foundation of China 81071088;
International Science and Technology Cooperation Program of China 2010DFB30820;
National High Technology Research and Development Program of China 2009AA022702
PMID:23173617 THIS RESOURCE IS NO LONGER IN SERVICE nlx_153896 http://202.38.126.151/hmdd/mirsnp/search/ SCR_001629 2026-09-19 12:56:31 74
AnimalTFDB
 
Resource Report
Resource Website
100+ mentions
AnimalTFDB (RRID:SCR_001624) AnimalTFDB data or information resource, database A comprehensive transcription factor (TF) database in which they identified and classified all the genome-wide TFs in 50 sequenced animal genomes (Ensembl release version 60). In addition to TFs, it also collects transcription co-factors and chromatin remodeling factors of those genomes, which play regulatory roles in transcription. Here they defined the TFs as proteins containing a sequence-specific DNA-binding domain (DBD) and regulating target gene expression. Currently, the AnimalTFDB classifies all the animal TFs into 72 families according to their conserved DBDs. Gene lists of transcription factors, transcription co-factors and chromatin remodeling factors of each species are available for downloading., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. transcription factor, dna-binding domain, transcription co-factor, chromatin remodeling factor, gene structure, functional domain, go annotation, protein interaction, ortholog, paralog, 3d structure, pathway, protein-protein interaction, binding site, target, data set, image collection, 3d spatial image, bio.tools, FASEB list is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
is related to: Gene Ontology
is related to: Ensembl
has parent organization: Huazhong University of Science and Technology; Wuhan; China
Huazhong University of Science and Technology; Wuhan; China ;
Fundamental Research Funds for the Central Universities 2010MS045;
National Natural Science Foundation of China 31171271
PMID:22080564 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01856, nlx_153892, biotools:animal_tfdb https://bio.tools/animal_tfdb SCR_001624 Animal Transcription Factor Database 2026-09-19 12:56:31 292
Human Gene Mutation Database
 
Resource Report
Resource Website
1000+ mentions
Human Gene Mutation Database (RRID:SCR_001621) HGMD data or information resource, database Curated database of known (published) gene lesions responsible for human inherited disease. gene, disease, gene lesion, mutation, deletion, insertion, duplication, rearrangement, nuclear gene, functional polymorphism, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
is related to: BIOBASE Corporation
has parent organization: Cardiff University; Wales; United Kingdom
Inherited disease PMID:22948725
PMID:20368137
PMID:20038494
PMID:19348700
PMID:18428754
PMID:18245393
PMID:12754702
PMID:10612821
PMID:9399854
PMID:9066272
PMID:8882888
Free, Freely available nlx_153887, SCR_001888, biotools:hgmd, nif-0000-10459, OMICS_00281 http://www.hgmd.cf.ac.uk/ac/index.php, https://bio.tools/hgmd, SCR_001621 The Human Gene Mutation Database, The Human Gene Mutation Database at the Institute of Medical Genetics in Cardiff 2026-09-19 12:56:31 2682
DIAN - Dominantly Inherited Alzheimer Network
 
Resource Report
Resource Website
DIAN - Dominantly Inherited Alzheimer Network (RRID:SCR_000812) DIAN biomaterial supply resource, material resource, tissue bank THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. An international research partnership of leading scientists determined to understand a rare form of Alzheimers disease that is caused by a gene mutation and to establish a research database and tissue repository to support research on Alzheimers disease by other investigators around the world. One goal of DIAN is to study possible brain changes that occur before Alzheimers disease is expressed in people who carry an Alzheimers disease mutation. Other family members without a mutation will serve as a comparison group. People in families in which a mutation has been identified will be tracked in order to detect physical or mental changes that might distinguish people who inherited the mutation from those who did not. DIAN currently involves eleven outstanding research institutions in the United States, United Kingdom, and Australia. John C. Morris, M.D., Friedman Distinguished Professor of Neurology at Washington University School of Medicine in St. Louis, is the principal investigator of the project., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. is listed by: One Mind Biospecimen Bank Listing
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: National Cell Repository for Alzheimer's Disease
has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA
NIA U01AG032438 PMID:23139856
PMID:24131566
THIS RESOURCE IS NO LONGER IN SERVICE nlx_149316 SCR_000812 Dominantly Inherited Alzheimer Network (DIAN), Dominantly Inherited Alzheimer Network 2026-09-19 12:56:28 0
GTEx eQTL Browser
 
Resource Report
Resource Website
100+ mentions
GTEx eQTL Browser (RRID:SCR_001618) data or information resource, database Database and browser that provides a central resource to archive and display association between genetic variation and high-throughput molecular-level phenotypes. This effort originated with the NIH GTEx roadmap project: however the scope of this resource will be extended to include any available genotype/molecular phenotype datasets. genetic variation, high-throughput, phenotype, genotype, molecular, molecule, gene, gene expression, snp, trait, expression, quantitative trait locus, expression quantitative trait locus, genome, probe, sequence, statistics, p-value, rna-seq, array, lymphoblastoid, liver, cerebellum, frontal cortex, temporal cortex, pons, gene regulation, tissue, mrna, data set has parent organization: NCBI NIH Common Fund 268201000029C-4-0-2 Free, Freely available nlx_153884 http://www.gtexportal.org/home/ SCR_001618 NCBI GTEx eQTL Browser, Genotype-Tissue Expression eQTL Browser, GTEx (Genotype-Tissue Expression) eQTL Browser, NCBI GTeX eQTL Browser 2026-09-19 12:56:31 499
CPCTR: Cooperative Prostate Cancer Tissue Resource
 
Resource Report
Resource Website
1+ mentions
CPCTR: Cooperative Prostate Cancer Tissue Resource (RRID:SCR_000803) CPCTR biomaterial supply resource, material resource, tissue bank THIS RESOURCE IS NO LONGER IN SERVICE. Doumented on September 23,2022. The National Cancer Institute initially established the Cooperative Prostate Cancer Tissue Resource (CPCTR) to provide prostate cancer tissue samples with clinical annotation to researchers. The Resource provides access to formalin-fixed, paraffin-embedded primary prostate cancer tissue with associated clinical and follow-up data for research studies, particularly studies focused on translating basic research findings into clinical application. Fresh-frozen tissue is also available with limited clinical follow up information since these are more recent cases. The Resource database contains pathologic and clinical information linked to a large collection of prostate tissue specimens that is available for research. Researchers can determine whether the Resource has the tissues and patient data they need for their individual research studies. Consultation and interpretive services: Assistance is available from trained CPCTR pathologists. The CPCTR can provide consultative assistance in staining interpretation, and scoring, on a collaborative basis. Fresh Frozen and Paraffin Tissue: The resource has over 7,000 annotated cases (including 7,635 specimens and 38,399 annotated blocks). Tissue Microarrays (TMA): The CPCTR has slides from prostate cancer TMAs with associated clinical data. The information provided for each case on the arrays (derived from radical prostatectomy specimens) includes: age at diagnosis, race, PSA at diagnosis, tumor size, TNM stage, Gleason score and grade, and vital status and other variables. prostate cancer, tissue microarray, fresh frozen, paraffin tissue, tumor, tissue, primary prostate cancer tissue, clinical data, follow-up data, outcome data, formalin-fixed paraffin-embedded is listed by: One Mind Biospecimen Bank Listing
has parent organization: University of Pittsburgh; Pennsylvania; USA
Prostate cancer NCI CA086772 PMID:15269132 THIS RESOURCE IS NO LONGER IN SERVICE nlx_143725 SCR_000803 Cooperative Prostate Cancer Tissue Resource 2026-09-19 12:56:28 2
WegoLoc
 
Resource Report
Resource Website
1+ mentions
WegoLoc (RRID:SCR_001402) WegoLoc analysis service resource, data analysis service, production service resource, service resource Data analysis service that predicts protein subcellular localizations of animal, fungal, plant, and human proteins based on sequence similarity and gene ontology information. subcellular localization, protein is listed by: OMICtools
is related to: Gene Ontology
THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01636 SCR_001402 weighted gene ontology term based subcellular locallization prediction 2026-09-19 12:56:30 4
MINT
 
Resource Report
Resource Website
1000+ mentions
MINT (RRID:SCR_001523) MINT data or information resource, database A database that focuses on experimentally verified protein-protein interactions mined from the scientific literature by expert curators. The curated data can be analyzed in the context of the high throughput data and viewed graphically with the MINT Viewer. This collection of molecular interaction databases can be used to search for, analyze and graphically display molecular interaction networks and pathways from a wide variety of species. MINT is comprised of separate database components. HomoMINT, is an inferred human protein interatction database. Domino, is database of domain peptide interactions. VirusMINT explores the interactions of viral proteins with human proteins. The MINT connect viewer allows you to enter a list of proteins (e.g. proteins in a pathway) to retrieve, display and download a network with all the interactions connecting them. protein-protein interaction, protein, interaction, virus, peptide, organelle co-localization, pathway, molecular interaction, papillomavirus, epstein-barr virus, hepatitis b virus, hepatitis c virus, human adenovirus, human herpesvirus, human immunodeficiency virus, influenza a virus, vaccinia virus, simian virus 40, virus strains, virus protein, orthologous protein, network, proteomics, ortholog, FASEB list uses: IntAct
uses: PSI-MI
is listed by: re3data.org
is affiliated with: IMEx - The International Molecular Exchange Consortium
is related to: MPIDB
is related to: TissueNet - The Database of Human Tissue Protein-Protein Interactions
is related to: InteroPorc
is related to: Interaction Reference Index
is related to: Pathway Commons
is related to: ConsensusPathDB
is related to: VirusMINT
is related to: PSICQUIC Registry
is related to: Agile Protein Interactomes DataServer
has parent organization: University of Rome Tor Vergata; Rome; Italy
works with: IMEx - The International Molecular Exchange Consortium
European Union ;
ENFIN ;
Interaction Proteome Project ;
IMEx - The International Molecular Exchange Consortium ;
HUPO Proteomics Standards Initiative ;
AIRC Associazione Italiana per la Ricerca sul Cancro
PMID:22096227
PMID:24234451
PMID:19897547
PMID:18592188
PMID:18551417
PMID:18428712
PMID:17135203
PMID:11911893
nlx_152821, r3d100010414 https://doi.org/10.17616/R38S3B SCR_001523 MINT, the Molecular INTeraction database, Molecular Interactions Database, Molecular INTeraction database, MINT - the Molecular INTeraction database 2026-09-19 12:56:30 1141
NeuroPedia
 
Resource Report
Resource Website
10+ mentions
NeuroPedia (RRID:SCR_001551) NeuroPedia data or information resource, database A neuropeptide encyclopedia of peptide sequences (including genomic and taxonomic information) and spectral libraries of identified MS/MS spectra of homolog neuropeptides from multiple species. proteomics, peptide, neuropeptide, mass spectrometry assay, peptide sequence, spectrum, homolog has parent organization: Center for Computational Mass Spectrometry NCRR P41-RR024851;
NIDA 5K01DA23065;
NINDS R01 NS24553;
NIDA R01 DA04271;
NIMH R01 MH077305;
NHLBI P01 HL58120
PMID:21821666 Free, Freely available nlx_152894 SCR_001551 NeuroPedia: Neuropeptide database and spectra library 2026-09-19 12:56:30 12
WikiPathways
 
Resource Report
Resource Website
1000+ mentions
WikiPathways (RRID:SCR_002134) data or information resource, database, service resource Open and collaborative platform dedicated to curation of biological pathways. Each pathway has dedicated wiki page, displaying current diagram, description, references, download options, version history, and component gene and protein lists. Database of biological pathways maintained by and for scientific community. database, knowledge environment resource, image, web service, biological pathway, diagram description, reference, pathway, FASEB list is used by: NIF Data Federation
is used by: Open PHACTS
is related to: PharmGKB
is related to: Reactome
is related to: NetPath
is related to: ConsensusPathDB
is related to: NCBI BioSystems Database
is related to: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit
has parent organization: University of California at San Francisco; California; USA
has parent organization: Maastricht University; Maastricht; Netherlands
Google Summer of Code program ;
Netherlands Bioinformatics Centre ;
NIGMS GM080223;
NIGMS R01 GM100039;
NIH ;
NWO - Netherlands Organization for Scientific Research
PMID:22096230
PMID:18651794
Free, Freely available nif-0000-20925, r3d100013316 SCR_002134 Wiki Pathways 2026-09-19 12:56:34 2013
HOMOZYGOSITYMAPPER
 
Resource Report
Resource Website
100+ mentions
HOMOZYGOSITYMAPPER (RRID:SCR_001714) HomozygosityMapper analysis service resource, data analysis service, production service resource, service resource A web-based approach of homozygosity mapping that can handle tens of thousands markers. User can upload their own SNP genotype files to the database. Intuitive graphic interface is provided to view the homozygous stretches, with the ability of zooming into single chromosomes or user-defined chromosome regions. The underlying genotypes in all samples are displayed. The software is also integrated with our candidate gene search engine, GeneDistiller, so that users can interactively determine the most promising gene. (entry from Genetic Analysis Software) gene, genetic, genomic, perl, genotype, homozygosity score, homozygosity, bio.tools, FASEB list is listed by: OMICtools
is listed by: Genetic Analysis Software
is listed by: bio.tools
is listed by: Debian
has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany
PMID:19465395 Free, Freely Available nlx_154069, biotools:homozygositymapper, OMICS_00123 https://bio.tools/homozygositymapper SCR_001714 2026-09-19 12:56:31 125
pSTIING
 
Resource Report
Resource Website
1+ mentions
pSTIING (RRID:SCR_002045) pSTIING data or information resource, database A publicly accessible knowledgebase about protein-protein, protein-lipid, protein-small molecules, ligand-receptor interactions, receptor-cell type information, transcriptional regulatory and signal transduction modules relevant to inflammation, cell migration and tumourigenesis. It integrates in-house curated information from the literature, biochemical experiments, functional assays and in vivo studies, with publicly available information from multiple and diverse sources across human, rat, mouse, fly, worm and yeast. The knowledgebase allowing users to search and to dynamically generate visual representations of protein-protein interactions and transcriptional regulatory networks. Signalling and transcriptional modules can also be displayed singly or in combination. This allow users to identify important "cross-talks" between signalling modules via connections with key components or "hubs". The knowledgebase will facilitate a "systems-wide" understanding across many protein, signalling and transcriptional regulatory networks triggered by multiple environmental cues, and also serve as a platform for future efforts to computationally and mathematically model the system behavior of inflammatory processes and tumourigenesis. protein-protein, protein-lipid, protein-small molecule, ligand-receptor interaction, receptor-cell type, transcriptional regulatory module, signal transduction module, inflammation, cell migration, tumorigenesis, protein-protein interaction, transcriptional regulatory network, signalling pathway, interaction, protein interaction, motif, domain, protein, gene is listed by: OMICtools
is related to: Gene Ontology
has parent organization: University College London; London; United Kingdom
Inflammation, Tumor, Cancer PMID:16381926 THIS RESOURCE IS NO LONGER IN SERVICE OMICS_01916 SCR_002045 Protein Signalling Transcriptional Interactions and Inflammation Networks Gateway, Protein Signalling Transcriptional Interactions & Inflammation Networks Gateway 2026-09-19 12:56:32 2
Bgee: dataBase for Gene Expression Evolution
 
Resource Report
Resource Website
50+ mentions
Bgee: dataBase for Gene Expression Evolution (RRID:SCR_002028) Bgee data or information resource, database Database to retrieve and compare gene expression patterns between animal species. Bgee first maps heterogeneous expression data (currently bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data) to anatomy and development of different species. Bgee is based exclusively on curated healthy wild-type expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of gene expression. gene expression, scrna-seq, rna-seq, affymetrix, in situ hybridization, expressed sequence tag, cross specie, comparison, homology, anatomy, developmental stage, gene expression pattern, development, genome, function, chordate, fish, transcriptiome, embryo, adult, mirna, protein coding, prenatal, immature, post-embryonic development, alimentary system, cardiovascular system, nervous system, renal system, reproductive system, respiratory system, skeletal system, ortholog, ontology, FASEB list is related to: Gene Expression Omnibus
is related to: NCBI Sequence Read Archive (SRA)
is related to: ArrayExpress
is related to: Zebrafish Information Network (ZFIN)
is related to: Xenbase
is related to: Mouse Genome Informatics (MGI)
is related to: Berkeley Drosophila Genome Project
is related to: UniGene
is related to: Zebrafish Anatomical Ontology
is related to: eVOC
is related to: Adult Mouse Anatomy Ontology
is related to: Xenopus Anatomy Ontology
is related to: Drosophila anatomy and development ontologies
is related to: Ensembl
has parent organization: SIB Swiss Institute of Bioinformatics
has parent organization: University of Lausanne; Lausanne; Switzerland
Free, Freely available nif-0000-11819, r3d100014596 https://doi.org/10.17616/R31NJNR8 SCR_002028 Bgee: dataBase Gene Expression Evolution, dataBase Gene Expression Evolution 2026-09-19 12:56:32 70
MADELINE
 
Resource Report
Resource Website
1+ mentions
MADELINE (RRID:SCR_001979) MADELINE service resource, software application, software resource Software tool designed for preparing, visualizing, and exploring human pedigree data used in genetic linkage studies. It converts pedigree and marker data into formats required by popular linkage analysis packages, provides powerful ways to query pedigree data sets, and produces Postscript pedigree drawings that are useful for rapid data review. gene, genetic, genomic, c, unix, solaris, freebsd, openbsd, macos, ms-windows, cygwin, linux, pedigree, draw, linkage association, family association is listed by: OMICtools
is listed by: Genetic Analysis Software
has parent organization: University of Michigan; Ann Arbor; USA
PMID:17488757 THIS RESOURCE IS NO LONGER IN SERVICE nlx_154446, OMICS_00210 http://eyegene.ophthy.med.umich.edu/#madeline SCR_001979 Madeline 2026-09-19 12:56:32 5

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