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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Cystic Fibrosis Mutation Database Resource Report Resource Website 10+ mentions |
Cystic Fibrosis Mutation Database (RRID:SCR_000685) | CFTR1, CFMDB | database, data repository, storage service resource, data or information resource, service resource | Collection of mutations in CFTR gene for international cystic fibrosis genetics research community. Provides up to date information about individual mutations in CFTR gene. All known CFTR mutations and sequence variants have been converted to standard nomenclature recommended by Human Genome Variation Society. On line process for submission of new mutations has been added.While they continue to ensure quality of data, they urge international community to give them feedback and suggestions. Clinical information in this database relates only to details of discovery of specific mutations. As part of 2010 upgrade, CFTR1 joined new project called CFTR2 - Clinical and Functional TRanslation of CFTR. Links to CFTR2 for many mutations in CFTR1 will provide up-to-date summaries of genotype-phenotype information from patient registries around the world. | Gene, genetic, amino acid, clinical, cystic fibrosis, mutation, phenotype, genotype-phenotype, genotype, dna sequence, mouse, sequence, genetic variation, polymorphism, translation, function, sequence variation, metadata standard, cftr2, FASEB list | is related to: CFTR2 | Cystic fibrosis | Free, Freely available | nif-0000-21105, r3d100012093 | https://doi.org/10.17616/R38356 | SCR_000685 | 2026-08-15 11:21:47 | 42 | ||||||
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HIrisPlex system Resource Report Resource Website 50+ mentions |
HIrisPlex system (RRID:SCR_014058) | software application, simulation software, software resource | An interactive software tool that predicts hair and eye color based on genetics. The website includes both the IrisPlex system and the HIrisPlex system. | DNA, phenotype, eye color, hair color, data analysis, software | PMID:22917817 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_014058 | 2026-08-15 11:21:48 | 52 | ||||||||||
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EUCOMMTOOLS Resource Report Resource Website 1+ mentions |
EUCOMMTOOLS (RRID:SCR_000676) | EUCOMMTOOLS | material service resource, service resource, production service resource, biomaterial manufacture | Functional Annotation of the Mouse Genome, it will complete the International Knockout Mouse Consortium (IKMC) resource of mutations for all protein coding genes. Furthermore, it will maximize the utility of the conditional IKMC resource by generating up to 250 different, mostly inducible Cre driver mouse lines. In addition, EUCOMMTOOLS will develop novel tools to enhance the versatility of the IKMC resource. EUCOMMTOOLS vectors, mutant ES cells and mutant mice are distributed worldwide: EUCOMMTOOLS mutant ES cells and vectors can be obtained from the European Mouse Mutant Cell Repository (EuMMCR). EUCOMMTOOLS mutant mice are archived and distributed by the European Mouse Mutant Archive (EMMA). Knockout-first Mutant Alleles: EUCOMMTOOLS will create 3500 C57Bl/6 conditional mutant alleles for single-exon (or otherwise previously conditionally untargeted) protein-coding mouse genes. These alleles will be made predominantly by introducing an "artificial intron", containing a standard EUCOMM promoter-driven targeting cassette, into the coding sequence of the single-exon gene. Cre Resources: EUCOMMTOOLS will engineer 500 new Cre C57Bl/6 ES cell lines by Cre knock-ins into genes with useful expression patterns. The resource will be made with inducible forms of Cre recombinase such as CreERT2. Up to 250 lines of Cre driver mice on a pure C57Bl/6N background will be generated and the Cre expression patterns documented and annotated in day P14 and P56. These mice will form a matched Cre driver resource for C57Bl/6N mice produced from conditional IKMC resources. Research, Technology and Complementary Reagents: EUCOMMTOOLS will develop novel technologies to add value, depth and flexibility to existing IKMC ES cell and mouse resources. Key areas include: * Development of novel recombinase based regulatory switches * Exploration of zinc-finger nuclease stimulated homologous recombination strategies in fertilized oocytes * Development and validation of complementary modular vector reagents which enable the construction of new useful knock-in alleles such as fluorescent and other reporters, site specific recombinases, and mutant cDNAs. These novel alleles can be constructed either by re-utilizing existing IKMC modular vector resources or directly modifying existing targeted IKMC ES cell lines by RMCE. | genome, annotation, function, mutation, protein coding gene, vector, mutant embryonic stem cell, mutant mouse strain, cre driver, cre, recombinase, c57bl/6, allele, embryonic stem cell line, c57bl/6n, knock-in |
uses: EuMMCR uses: European Mouse Mutant Archive is related to: Recombinase (cre) Activity has parent organization: International Knockout Mouse Consortium |
European Union ; FP7 ; THEME Health |
nlx_152804 | SCR_000676 | EUCOMM - Tools for Functional Annotation of the Mouse Genome, EUCOMM: Tools for Functional Annotation of the Mouse Genome | 2026-08-15 11:21:47 | 1 | |||||||
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BRAINnet-Brain Research And Integrative Neuroscience Network Resource Report Resource Website 10+ mentions |
BRAINnet-Brain Research And Integrative Neuroscience Network (RRID:SCR_000712) | BRAINnet | funding resource, data or information resource, database, knowledge environment | A neuroscience network providing access to a database of brain, cognitive, genomic and clinical data for research and scientific publication. Data include genomic information, electrical measures of brain and body function, structural and functional MRI, and cognitive and medical history. All data are collected using a standardized assessment protocols. These data are from healthy people and those experiencing a range of brain-related illnesses. | funding resource, database, knowledge environment, human brain, neuroscience network, cognitive data, clinical data, genomic data, mri | Aging, Major Depressive Disorder, Attention Deficit-hyperactivity Disorder, Schizophrenia, Post-traumatic Stress Disorder, Alzheimers Disease, Mild Cognitive Impairment, Traumatic Brain Injury, Sleep Apnea, Panic Disorder, Anorexia Nervosa | BRAINnet Foundation | PMID:33030350 | Free, Freely available, | nif-0000-00502 | SCR_000712 | Brain Research And Integrative Neuroscience Network | 2026-08-15 11:21:48 | 15 | |||||
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NIH - Rapid Access to Interventional Development Resource Report Resource Website 1+ mentions |
NIH - Rapid Access to Interventional Development (RRID:SCR_000713) | production service resource, funding resource, biomaterial analysis service, biomaterial manufacture, material analysis service, material service resource, service resource, analysis service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 14, 2025.NIH-RAID makes available at no cost to researchers and organizations certain critical resources needed for the development of new therapeutic agents. This program, part of the Translational Research component of Reengineering the Clinical Research Enterprise, uses resources of NCI's Developmental Therapeutics Program and the National Heart Lung and Blood Institutes (NHLBI) Gene Therapy Resource Program. The services provided will depend upon the stage of the project and the strength of the preliminary data. Services available include: production, bulk supply, GMP manufacturing, formulation, development of an assay suitable for pharmacokinetic testing, and animal toxicology. Assistance also will be provided in the regulatory process, through access to independent product development planning expertise. Proposals in support of animal efficacy studies or synthesis and formulation of recombinant proteins or monoclonal antibodies will not be accepted. NIH-RAID is not a grant program. Successful projects will gain access to the governments contract resources, as well as the assistance of the NIH in establishing and implementing a product development plan. Funds to support individual projects will come both from the Roadmap and from individual Institutes, with Institutes assuming the bulk of support in the specific disease areas germane to their mission. This co-sponsorship is critical because of the resource and expertise needs and because NIH-RAID cannot support the full developmental pipeline; an Institute partnership may therefore be important for subsequent translational efforts. To obtain access to NIH-RAID resources, applications must be submitted electronically through Grants.gov using SF424. Applications are initially screened to determine whether the resources requested are appropriate for this program. Then they are reviewed by the NIH Center for Scientific Research. The results of that evaluation along with supplemental information from the lead investigator will guide final Institute and Roadmap resource allocation. The services provided will depend upon the stage of the project and the strength of the preliminary data. When a lead therapeutic agent has been selected and proposed for preclinical development, the following services are available: For small molecules, natural products, peptides, oligonucleotides, and gene vectors: Synthesis, Scale-up production, Development of analytical methods, Development of suitable formulations, Isolation and purification of natural products, Pharmacokinetic/ADME studies including bioanalytical method development, Range-finding initial toxicology, IND-directed toxicology, Manufacture of clinical trial supplies, Product development planning and advice in IND preparation For recombinant proteins and monoclonal antibodies: Pharmacokinetic/ADME studies including bioanalytical method development, Range-finding initial toxicology, IND-directed toxicology, Product development planning and advice in IND preparation When a lead therapeutic agent has not yet been selected and proposed for preclinical development, the following services are available: For small molecules, natural products, peptides, oligonucleotides, and gene vectors: Synthesis, Development of analytical methods, Isolation and purification of natural products, Preliminary Pharmacokinetic/ADME studies, including bioanalytical method development, Preliminary toxicology For recombinant proteins and monoclonal antibodies, Preliminary Pharmacokinetic/ADME studies, including bioanalytical method development, Preliminary toxicology In some cases the NIH-RAID program will support only one or two key steps for preclinical development, while in other cases it may be possible to provide assistance with most of the development tasks needed to file an Investigational New Drug (IND) application to the Food and Drug Administration (FDA). When the NIH-RAID program does not provide all of the remaining services required for IND submission, it is expected that other resources will be in place to complete development steps not supported by NIH-RAID. Funding Resource,. | adme, applied, biomaterial method development, clinical, pharmacology, student, toxicology | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00543 | http://nihroadmap.nih.gov/raid/ | SCR_000713 | NIH-RAID | 2026-08-15 11:21:58 | 1 | ||||||||
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DeNovoGear Resource Report Resource Website 1+ mentions |
DeNovoGear (RRID:SCR_000670) | software resource | A software for detecting de novo mutations using sequencing data. It utilizes likelihood-based error modeling to reduce the false positive rate of mutative discovery in exome analysis. It also uses fragment information to identify the parental origin of germ-line mutations. | de novo, mutation, sequence, dna, rna, error modeling, exome analysis |
is listed by: OMICtools has parent organization: SourceForge has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA |
PMID:23975140 | Free, Available for download, Freely available | OMICS_00083 | https://github.com/denovogear/denovogear | SCR_000670 | 2026-08-15 11:21:47 | 3 | |||||||
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MEGA Resource Report Resource Website 1000+ mentions |
MEGA (RRID:SCR_000667) | MEGA, MEGA6, MEGA4, MEGA 4, MEGA 11 | software toolkit, data processing software, software application, data analysis software, software resource, sequence analysis software | Software integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining web based databases, estimating rates of molecular evolution, and testing evolutionary hypotheses. Used for comparative analysis of DNA and protein sequences to infer molecular evolutionary patterns of genes, genomes, and species over time. MEGA version 4 expands on existing facilities for editing DNA sequence data from autosequencers, mining Web-databases, performing automatic and manual sequence alignment, analyzing sequence alignments to estimate evolutionary distances, inferring phylogenetic trees, and testing evolutionary hypotheses. MEGA version 6 enables inference of timetrees, as it implements RelTime method for estimating divergence times for all branching points in phylogeny. | comparative, analysis, DNA, protein, sequence, molecular, evolution, pattern, gene, genome, evolution, FASEB list | has parent organization: Pennsylvania State University | Japan Society for the Promotion of Science ; NHGRI HG006039; NHGRI HG002096; Burroughs-Wellcome Fund ; NIGMS R01GM126567; NSF ABI 1661218; NIGMS R35GM139504 |
DOI:10.1093/molbev/msab120 PMID:24132122 PMID:31904846 PMID:22923298 PMID:21546353 PMID:17488738 PMID:15260895 PMID:11751241 PMID:8019868 |
Free, Available for download, Freely available | SCR_023017, nlx_156838 | https://www.megasoftware.net/mega4/ | SCR_000667 | MEGA11, Molecular Evolutionary Genetics Analysis, Molecular Evolutionary Genetics Analysis 6, Molecular Evolutionary Genetics Analysis 4 | 2026-08-15 11:21:56 | 2774 | ||||
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Asper Biotech Resource Report Resource Website 10+ mentions |
Asper Biotech (RRID:SCR_000700) | material resource, instrument supplier | A genetic testing company for rare and complex disorders and syndromes. The company specializes in retinal disorders, reproductive medicine and oncology. They also offer custom genotyping services. | genetic, test, syndrome, disorder, retinal, reproductive, medicine, oncology, genotyping, genotype, dna, blood, saliva, microarray, primer | nif-0000-30125 | SCR_000700 | AsperBio | 2026-08-15 11:21:57 | 10 | ||||||||||
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Gatsby Charitable Foundation Resource Report Resource Website 10+ mentions |
Gatsby Charitable Foundation (RRID:SCR_000618) | Gatsby | institution | Gatsby is a Foundation set up by David Sainsbury to realize his charitable objectives. Gatsby works in areas that David Sainsbury and the Trustees are particularly passionate about and where they believe charitable funding can make a real difference. Gatsby is currently active in six tightly-focused areas: * Plant science research * Neuroscience research * Science and engineering education * Economic development in Africa * Public policy research and advice * The Arts We have also supported significant programs in mental health - in particular through the founding of the Centre for Mental Health - although we are no longer focusing on this area. Across all areas, we aim to be more than a funder. We act as an enabler for projects, designing, developing, overseeing and, in some cases, delivering activities. We are proactive in putting together projects to achieve our aims. Rather than wait for third-party proposals, we identify areas of need, commission research and design interventions in partnership with sector and industry experts. We take a long-term view as we do not think much can be achieved by short, one-off projects. We build long relationships with the organizations we support, allowing both them and us to learn from successes and failures and to develop sustainable change. We are particularly enthusiastic about supporting innovation. David Sainsbury has long believed that private foundations have an important role to play in testing imaginative models and new ideas that governments may see as too risky for public funding, even when they have significant potential to benefit the public if they succeed. Gatsby can incubate such models, giving them the support they need to prove themselves and build the track-records that will encourage others to scale them up. We will continue to support and undertake both large- and small-scale work, employing different methods and models depending on the different challenges, but always ultimately looking to deliver long-term, sustainable change. Registered Charity No. 251988 | art, neuroscience, plant science, education, africa, public policy, science, engineering, research, economic development | ISNI: 0000 0001 0199 6389, nlx_151556, Crossref funder ID: 501100000324, grid.453189.2 | https://ror.org/0290hax27 | SCR_000618 | Gatsby | 2026-08-15 11:21:46 | 18 | ||||||||
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De Humani Corporis Fabrica Resource Report Resource Website 1+ mentions |
De Humani Corporis Fabrica (RRID:SCR_000699) | De Humani Corporis Fabrica | image collection, data or information resource, narrative resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 10,2026. English translation of Andreas Vesalius' Renaissance anatomical atlas On the Fabric of the Human Body (1543, 1555) and an explanation of the work in progress at Northwestern University to translate and annotate this historic work (by Daniel Garrison and Malcolm Hast). This detailed account of human anatomy transformed its subject and forever changed medical education in the West. Its woodcut illustrations became the basis of medical art and illustrations for generations to come, and continue to influence the way we look at the human body. * Book One -- The things that sustain and support the entire body, and what braces and attaches them all. (the bones and the ligaments that interconnect them) * Book Two -- All the ligaments and muscles, instruments of voluntary and deliberate motion * Book Three -- The series of veins and arteries throughout the body * Book Four -- The nerves * Book Five -- The organs of nutrition and generation * Book Six -- The heart and organs serving the heart (Chiefly the heart and lungs) * Book Seven -- The brain and organs of sense Note: Only introduction, images, and essays appear to be available. | anatomy, history, anatomical atlas, essay, book | has parent organization: Northwestern University; Illinois; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149200 | SCR_000699 | Andreas Vesalius' De Humani Corporis Fabrica, Andreas Vesalius De Humani Corporis Fabrica, The Fabric of the Human Body, Fabric of the Human Body, On the Fabric of the Human Body | 2026-08-15 11:21:48 | 1 | |||||||
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MacArthur Foundation Resource Report Resource Website 100+ mentions |
MacArthur Foundation (RRID:SCR_000612) | MacArthur Foundation | funding resource | The John D. and Catherine T. MacArthur Foundation supports creative people and effective institutions committed to building a more just, verdant, and peaceful world. In addition to selecting the MacArthur Fellows, the Foundation works to defend human rights, advance global conservation and security, make cities better places, and understand how technology is affecting children and society. MacArthur is one of the nation's largest independent foundations. Through the support it provides, the Foundation fosters the development of knowledge, nurtures individual creativity, strengthens institutions, helps improve public policy, and provides information to the public, primarily through support for public interest media. The Foundation makes grants and loans through four programs. * International Programs focus on international issues, including human rights and international justice, peace and security, conservation and sustainable development, higher education in Nigeria and Russia, migration, and population and reproductive health. MacArthur grantees work in about 60 countries; the Foundation has offices in India, Mexico, Nigeria, and Russia. * U.S. Programs address issues in the United States, including community and economic development; housing, with a focus on the preservation of affordable rental housing; juvenile justice reform; education, with an emerging interest in digital media and learning; and policy research and analysis. * Media, Culture, and Special Initiatives support public interest media, including public radio, documentary programming, and work to explore the use of digital technologies to reach and engage the public. Grants are also made to arts and cultural institutions in the Chicago area and for special initiatives. * The MacArthur Fellows Program awards five-year, unrestricted fellowships to individuals across all ages and fields who show exceptional merit and promise of continued creative work. It is limited to U.S. citizens and residents. John D. MacArthur (1897-1978) developed and owned Bankers Life and Casualty Company and other businesses, as well as considerable property in Florida and New York. His wife Catherine (1909-1981) held positions in many of these companies and served as a director of the Foundation. | grant, award, loan, fellowship | nlx_151326 | SCR_000612 | John D. and Catherine T. MacArthur Foundation | 2026-08-15 11:21:46 | 119 | |||||||||
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KLEIO Resource Report Resource Website 1+ mentions |
KLEIO (RRID:SCR_000698) | KLEIO | service resource | An information retrieval system that provides knowledge enriched searching facilities across the ever growing MEDLINE collection, the world's most comprehensive source of life sciences and biomedical bibliographic information. The semantic faceted search, using named entity recognition, can be accessed from your browser. By combining a selection of software services they can provide enhanced results through a process that identifies key entities within the text, such as gene names or proteins, and improves the querying method with unique identifiers by automatically including synonyms, spelling variants and even disambiguating acronyms. This combines with the traditional features found in other interfaces to provide a much needed solution to the growing problem of finding valuable information within the ever increasing volume of modern publications. The current available categories: * PROTEIN, GENE, METABOLITE, DISEASE, SYMPTOM, ORGAN, * DIAG_PROC, THERAPEUTIC_PROC, (diagnostic/therapeutic procedure, e.g. MRI, cerebral blood flow) * GENERAL_PHENOM, HUMAN_PHENOM, NATURAL_PHENOM, (Medical phenomenon or process, e.g. UV radiation ) * INDICATOR (Reagent or diagnostic aid, e.g. hydrogen peroxide, sulfhydryl reagent) * ACRONYM, AUTHOR, PUBLICATIONTYPE (e.g. Journal Article, Technical Report) Reference: C. Nobata, P. Cotter, N. Okazaki, B. Rea, Y. Sasaki, Y. Tsuruoka, J. Tsujii and S. Ananiadou. Kleio: a knowledge-enriched information retrieval system for biology. In Proc. of the 31st Annual International ACM SIGIR Conference, pp. 787--788, 2008 | semantic search, entity recognition |
is listed by: FORCE11 is listed by: OMICtools is related to: MEDLINE has parent organization: National Centre for Text Mining |
JISC | Acknowledgement required, See Terms of Use | OMICS_01186, nlx_44954 | http://www.nactem.ac.uk/software/kleio/ | SCR_000698 | 2026-08-15 11:21:47 | 3 | ||||||
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HIV Databases Resource Report Resource Website 100+ mentions |
HIV Databases (RRID:SCR_000614) | database, data or information resource, software resource | Contains comprehensive data on HIV genetic sequences and immunological epitopes. This collection of databases contains tools to visualize and analyze HIV-related data. | HIV, AIDS, HIV genetic sequences and immunological epitopes data, tools to visualize and analyze HIV-related data, FASEB list |
has parent organization: Los Alamos National Laboratory is parent organization of: Nonhuman Primate HIV/SIV Vaccine Trials Database is parent organization of: HCV Databases is parent organization of: HIV Molecular Immunology Database is parent organization of: HIV Sequence Database is parent organization of: HFV Database |
HIV, AIDS, SIV | NIAID | SCR_014940, nlx_151409 | SCR_000614 | 2026-08-15 11:21:55 | 495 | ||||||||
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FineSplice Resource Report Resource Website 1+ mentions |
FineSplice (RRID:SCR_000691) | software resource | A software pipeline based on TopHat2 combined with a splice junction detection algorithm. | standalone software, python |
is listed by: OMICtools has parent organization: SourceForge |
PMID:24574529 | Free, Available for download, Freely available | OMICS_03274 | SCR_000691 | 2026-08-15 11:21:47 | 1 | ||||||||
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PyNIfTI Resource Report Resource Website 1+ mentions |
PyNIfTI (RRID:SCR_000693) | software resource | PyNIfTI is no longer actively developed. At has been superseded by NiBabel -- a pure-Python package that provides everything that PyNIfTI could do, and a lot more. The PyNIfTI module is a Python interface to the NIfTI I/O libraries. Using PyNIfTI, one can easily read and write NIfTI and ANALYZE images from within Python. The NiftiImage class provides pythonic access to the full header information and for a maximum of interoperability the image data is made available via NumPy arrays. | reusable library, analyze, magnetic resonance, nifti, os independent, python |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: NiBabel has parent organization: Otto-von-Guericke University Magdeburg; Saxony-Anhalt; Germany |
Free, Available for download, Freely available | nlx_155929 | http://www.nitrc.org/projects/pynifti | SCR_000693 | PyNIfTI - Pythonic access to NIfTI and ANALYZE files, Pythonic access to NIfTI and ANALYZE files | 2026-08-15 11:21:47 | 2 | |||||||
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Zebrafish Brain Atlas Resource Report Resource Website 1+ mentions |
Zebrafish Brain Atlas (RRID:SCR_000606) | Zebrafish Brain Atlas | image repository, data repository, storage service resource, data or information resource, service resource, atlas | Collates and curates neuroanatomical data and information generated both in-house and by community to communicate current state of knowledge about neuroanatomical structures in developing zebrafish. Most of data come from high resolution confocal imaging of intact brains in which neuroanatomical structures are labelled by combinations of transgenes and antibodies. Community repository for image based data related to neuroanatomy of zebrafish. | brain, neuroanatomy, developing, transgene, antibody, confocal, section, reconstruction, high-resolution, developmental stage, embryo, brain structure, confocal imaging, comparative anatomy, transgenic, 3d spatial image, video, embryonic zebrafish, development, annotation, narrative resource, training material, cell repository |
recommends: Zebrafish Anatomical Ontology is listed by: One Mind Biospecimen Bank Listing has parent organization: University College London; London; United Kingdom |
European Union ; Wellcome Trust ; BBSRC |
Public, (Transgenic lines), Freely available for academic use, Creative Commons license, (pending verification), The community can contribute to this resource | nlx_149455 | http://zebrafishucl.org/ | http://www.ucl.ac.uk/zebrafish-group/zebrafishbrain/index.php | SCR_000606 | , zebrafishbrain.org, Zebrafish Brain Atlas | 2026-08-15 11:21:55 | 3 | ||||
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BISMA Resource Report Resource Website 10+ mentions |
BISMA (RRID:SCR_000688) | web application, software resource | An online tool for the analysis of bisulfite sequencing DNA methylation data. The software has specificity and quality control functions that allow the user to compile a set of sequences. | bisulfite sequencing, dna methylation, quality control |
is listed by: OMICtools has parent organization: Jacobs University Bremen; Bremen; Germany |
PMID:20459626 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00592 | SCR_000688 | Bisulfite Sequencing DNA Methylation Analysis, BISMA: Analysis of primary bisulfite sequencing data manual | 2026-08-15 11:21:47 | 13 | |||||||
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OnEx - Ontology Evolution Explorer Resource Report Resource Website 1+ mentions |
OnEx - Ontology Evolution Explorer (RRID:SCR_000602) | OnEx | web application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 6,2023. Web-based application that integrates versions of 16 life science ontologies including the Gene Ontology, NCI Thesaurus and selected OBO ontologies with data leading back to 2002 in a common repository to explore ontology changes. It allows to study and apply the evolution of these integrated ontologies on three different levels. It provides global ontology evolution statistics and ontology-specific evolution trends for concepts and relationships and it allows the migration of annotations in case a new ontology version was released | ontology, gene, protein, function, process, component, ontology or annotation browser, evolution, trend, annotation, version |
is listed by: OMICtools is listed by: Gene Ontology Tools is related to: Gene Ontology is related to: NCI Thesaurus is related to: OBO has parent organization: University of Leipzig; Saxony; Germany |
BMBF 01AK803E; DFG |
PMID:19678926 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02273, nlx_149129 | http://www.izbi.de/onex, http://aprilia.izbi.uni-leipzig.de:8080/onex/ | SCR_000602 | Ontology Evolution Explorer (OnEx), Ontology Evolution Explorer | 2026-08-15 11:21:46 | 1 | ||||
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University of Cambridge; Cambridge; United Kingdom Resource Report Resource Website 1+ mentions |
University of Cambridge; Cambridge; United Kingdom (RRID:SCR_000996) | university | Public research university in Cambridge, United Kingdom. Founded in 1209 is second oldest university in English speaking world. | cambridge, university, undergraduate, graduate |
uses: ShareLaTeX uses: Overleaf uses: ReadCube uses: Scizzle uses: Sparrho uses: Paperpile uses: Research Accelerator is related to: Psynova Neurotech is related to: EU-AIMS is related to: NEWMEDS is related to: Pharma-Planta Consortium is related to: International AMD Genetics Consortium is related to: EMIF is related to: European Management Platform for Emerging and Re-Emerging Infectious Disease Entities (EMPERIE) is related to: ShareLaTeX is related to: GCTF is related to: CCPN Analysis is related to: Babraham Institute is parent organization of: Kymata Atlas is parent organization of: ButterflyBase is parent organization of: BloodExpress is parent organization of: Flannotator is parent organization of: FlyMine is parent organization of: MRC Cognition and Brain Sciences Unit is parent organization of: Oscar3 is parent organization of: Pathbase is parent organization of: phenomeNET is parent organization of: Argumentative Zoning: Information Extraction from Scientific Articles is parent organization of: PomBase is parent organization of: BarraCUDA is parent organization of: Cambridge Brain Activation is parent organization of: Genetics of Learning Disability Study is parent organization of: Cambridge Structural Data Base is parent organization of: FlyTF is parent organization of: T1DBase is parent organization of: Cambridge Neuroscience Department is parent organization of: Brainwaver is parent organization of: University of Cambridge School of Clinical Medicine; Cambridge; United Kingdom is parent organization of: mCSM is parent organization of: Functional Genomics for Drosophila is parent organization of: Biological Interaction database for Protein-nucleic Acid is parent organization of: DOLOP: A Database of Bacterial Lipoproteins is parent organization of: snpStats: SnpMatrix and XSnpMatrix classes and methods is parent organization of: Chemistry Add-in for Word is parent organization of: InterMine is parent organization of: FlyBase is parent organization of: Retinal wave repository is parent organization of: BEADS is parent organization of: WHO World Health Mental Health Surveys is parent organization of: Dipy is parent organization of: Phaser is parent organization of: Cambridge Crystallographic Data Centre (CCDC) is parent organization of: Virtual Fly Brain is parent organization of: XenMARK is parent organization of: NeuroAnatomy Toolbox is parent organization of: Babraham Institute Enterprise Limited is parent organization of: C. elegans RNAi Collection (Ahringer) is parent organization of: University of Cambridge Bioinformatics and Computational Biology Services Core Facility is parent organization of: University of Cambridge Department of Plant Sciences Bioinformatics Core Facility is parent organization of: University of Cambridge Centre for Trophoblast Research Bioinformatics Core Facility is parent organization of: RAMPAGE is parent organization of: WinBUGS is parent organization of: Toolbox for Representational Similarity Analysis is parent organization of: Cancer Research UK Cambridge Institute is parent organization of: Cancer Research UK Cambridge Institute Flow Cytometry and Mass Cytometry Core Facility is parent organization of: Cancer Research UK Cambridge Institute Histopathology and In Situ Hybridisation Core Facility is parent organization of: Cancer Research UK Cambridge Institute Microscopy Core Facility is parent organization of: Cancer Research UK Cambridge Institute Proteomic Core Facility is parent organization of: Cancer Research UK Cambridge Institute Research Instrumentation and Cell Services Core Facility is parent organization of: Cancer Research UK Cambridge Institute Pre-Clinical Genome Editing Core Facility is parent organization of: Cancer Research UK Cambridge Institute Biological Resources Unit Core Facility is parent organization of: Cancer Research UK Cambridge Institute Bioinformatics Core Facility is parent organization of: Cancer Research UK Cambridge Institute Genomics Core Facility is parent organization of: Cancer Research UK Cambridge Institute Bioanalytical Mass Spectrometry Core Facility is parent organization of: Cancer Research UK Cambridge Institute Pre-clinical Imaging Core Facility |
Crossref funder ID:501100000735, Wikidata:Q35794, ISNI:121885934, nlx_31670, grid.5335.0 | https://ror.org/013meh722 | SCR_000996 | University of Cambridge | 2026-08-15 11:22:01 | 1 | ||||||||
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Royal Institute of Technology; Stockholm; Sweden Resource Report Resource Website 1+ mentions |
Royal Institute of Technology; Stockholm; Sweden (RRID:SCR_000992) | university | Royal Institute of Technology is a university in Stockholm, Sweden that has undergraduate, master's, and doctoral degree programs. | stockholm university, sweden technology institute, royal institute, undergraduate, master's, doctoral |
is parent organization of: Royal Institute of Technology: Research Project Database is parent organization of: International Neuroinformatics Coordinating Facility is parent organization of: SciLifeLab is parent organization of: Snudda |
grid.5037.1, Wikidata: Q854280, Crossref funder ID: 501100004270, nlx_48999, ISNI: 121581746 | https://ror.org/026vcq606 | SCR_000992 | Royal Institute of Technology | 2026-08-15 11:21:50 | 1 |
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We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the RRID Resources search. From here you can search through a compilation of resources used by RRID and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that RRID has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on RRID then you can log in from here to get additional features in RRID such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into RRID you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
