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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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REDCap Resource Report Resource Website 10000+ mentions |
REDCap (RRID:SCR_003445) | REDCap | web application, software resource | Web application that allows users to build and manage online surveys and databases. Using REDCap's stream-lined process for rapidly developing projects, you may create and design projects using 1) the online method from your web browser using the Online Designer; and/or 2) the offline method by constructing a "data dictionary" template file in Microsoft Excel, which can be later uploaded into REDCap. Both surveys and databases (or a mixture of the two) can be built using these methods. REDCap provides audit trails for tracking data manipulation and user activity, as well as automated export procedures for seamless data downloads to Excel, PDF, and common statistical packages (SPSS, SAS, Stata, R). Also included are a built-in project calendar, a scheduling module, ad hoc reporting tools, and advanced features, such as branching logic, file uploading, and calculated fields. REDCap has a quick and easy software installation process, so that you can get REDCap running and fully functional in a matter of minutes. Several language translations have already been compiled for REDCap (e.g. Chinese, French, German, Portuguese), and it is anticipated that other languages will be available in full versions of REDCap soon. The REDCap Shared Library is a repository for REDCap data collection instruments and forms that can be downloaded and used by researchers at REDCap partner institutions. | online survey, survey, database, translational research, informatics, workflow, clinical research, clinical, metadata, biomedical, online form, data capture, management, analysis, data sharing, data collection, data standard, best practice, data collection instrument, electronic data capture |
is listed by: Biositemaps is listed by: SoftCite is related to: Clinical and Translational Science Awards Consortium has parent organization: Vanderbilt University; Tennessee; USA works with: redcap-completion works with: aux-file-upload |
NIH ; UL1 RR029882 ; UL1 TR000062 ; UL1 RR026314 ; UL1 TR000077 ; UL1 RR024975 ; UL1 TR000445 ; G12 RR003051 ; G12 MD007600 ; UL1 RR024150 ; UL1 TR000135 ; R24 HD042849 ; UL1 RR024989 ; UL1 TR000439 |
PMID:23149159 PMID:18929686 |
Software is available at no cost for REDCap Consortium Partners. If not in the consortium, See the Become a Partner page to find more information about joining our group. | nif-0000-33254 | SCR_003445 | RED Cap, Research Electronic Data Capture, The REDCap Consortium | 2025-04-27 10:30:34 | 16341 | |||||
|
menoci Resource Report Resource Website |
menoci (RRID:SCR_023347) | web application, software resource | Lightweight, modular web-based data management platform for biomedical research projects. Introduces multiple extension modules that support scientific data management. Used for data collection, experiment documentation, data publication, sharing, and preservation in biomedical research projects. | Data management, data collection, experiment documentation, data publication, data sharing, FAIR | Projekt DEAL ; German Research Fonundation |
PMID:33334310 | Free, Freely available | https://gitlab.gwdg.de/medinfpub/menoci | SCR_023347 | 2025-04-27 10:43:49 | 0 | ||||||||
|
FAIRsharing Resource Report Resource Website 10+ mentions |
FAIRsharing (RRID:SCR_004177) | database, data or information resource | Web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with integrated view across all three types of resource. By registering your resource on FAIRsharing, you gain credit for your work, increase its visibility outside of your direct domain, reduce potential for unnecessary reinvention and proliferation of standards and databases. | Metadata standard, ontology, data sharing, data policy, data standard |
is used by: Integrated Datasets lists: Brain Imaging Data Structure (BIDs) lists: EBRAINS lists: Code Ocean lists: Distributed Archives for Neurophysiology Data Integration lists: CaltechDATA lists: DataONE lists: GBIF - Global Biodiversity Information Facility lists: Incorporated Research Institutions for Seismology lists: Mendeley Data lists: Open Science Framework lists: MorphoBank lists: PhysioNet lists: GigaDB lists: INPTDAT lists: OpenNeuro lists: Cancer Imaging Archive (TCIA) lists: Qualitative Data Repository lists: UK Data Archive lists: Dryad Digital Repository lists: BOLD lists: ZENODO lists: Vivli lists: FigShare lists: Influenza Research Database (IRD) lists: Cambridge Structural Data Base lists: National Snow and Ice Data Center lists: Virus Pathogen Resource (ViPR) lists: 4TU.ResearchData lists: Australian Data Archive lists: Atlas of Living Australia lists: Australian Ocean Data Network lists: Arch lists: Bolin Centre Database lists: B2SHARE Eudat lists: Connectome Workbench is listed by: FORCE11 is listed by: re3data.org is related to: bioDBcore is related to: Standards-based Infrastructure with Distributed Resources is related to: Genomic Standards Consortium is related to: ELIXIR Tools and Data Services Registry is related to: NCI Imaging Data Commons is related to: Cancer Research Data Commons is related to: SciLifeLab Data Platform has parent organization: University of Oxford; Oxford; United Kingdom is parent organization of: Minimum Information for Biological and Biomedical Investigations is parent organization of: FAIRSharing Catalogue of Standards |
Free, freely available | nlx_143602, SCR_017615 | http://www.force11.org/node/4701 https://fairsharing.org/ |
http://www.biosharing.org/ | SCR_004177 | BioSharing | 2025-04-27 10:30:57 | 41 | ||||||
|
NeuroMorpho.Org Resource Report Resource Website 50+ mentions |
NeuroMorpho.Org (RRID:SCR_002145) | data repository, service resource, storage service resource, database, data or information resource | Centrally curated inventory of digitally reconstructed neurons associated with peer-reviewed publications that contains some of the most complete axonal arborizations digitally available in the community. Each neuron is represented by a unique identifier, general information (metadata), the original and standardized ASCII files of the digital morphological reconstruction, and a set of morphometric features. It contains contributions from over 100 laboratories worldwide and is continuously updated as new morphological reconstructions are collected, published, and shared. Users may browse by species, brain region, cell type or lab name. Users can also download morphological reconstructions for research and analysis. Deposition and distribution of reconstruction files ultimately prevents data loss. Centralized curation and annotation aims at minimizing the effort required by data owners while ensuring a unified format. It also provides a one-stop entry point for all available reconstructions, thus maximizing data visibility and impact. | neuron, morphological reconstruction, morphometry, axonal arborization, digital neuronal reconstruction, neuronal reconstruction, neuronal morphology, data sharing, annotation, brain region, neocortex, digital reconstruction, neurogenetics, neurochemistry, neuroscience, neurology, FASEB list |
is used by: NIF Data Federation is used by: BICCN is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: DONE: Detection of Outlier NEurons is related to: NIF Literature is related to: Computational Neurobiology and Imaging Center is related to: Integrated Manually Extracted Annotation is related to: xyz2swc is related to: Allen Institute for Brain Science has parent organization: George Mason University; Virginia; USA is parent organization of: NeuroMorpho.Org species ontology is parent organization of: NeuroMorpho.Org species ontology old |
NINDS R01 NS39600; MURI ONR N000141010198 |
PMID:17728438 PMID:16552417 PMID:18949582 |
Acknowledgement requested, Public, The community can contribute to this resource | nif-0000-00006 | http://www.nitrc.org/projects/neuromorpho_org http://neuromorpho.org/ |
SCR_002145 | Neuro Morpho, NeuroMorpho.org, NeuroMorpho | 2025-04-27 10:29:25 | 83 | |||||
|
SEEK Resource Report Resource Website 10+ mentions |
SEEK (RRID:SCR_002651) | SEEK | data processing software, source code, data management software, software resource, data repository, service resource, storage service resource, data access protocol, web service, software application, data storage software | An open-source, web-based platform and suite of software tools for for sharing heterogeneous scientific research datasets, models or simulations, processes and research outcomes - and collaborations between scientists. It preserves associations between them, along with information about the people and organizations involved. Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology. SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users. Access to the RESTful API to access the data within SEEK is available. | data sharing, data set, systems biology, standard exchange format, metadata standard, data management, data citation, publishing software, bio.tools |
is listed by: OMICtools is listed by: FORCE11 is listed by: bio.tools is listed by: Debian is related to: ISA Infrastructure for Managing Experimental Metadata is related to: RightField has parent organization: University of Manchester; Manchester; United Kingdom has parent organization: Heidelberg Institute for Theoretical Studies; Heidelberg; Germany |
BBSRC ; BMBF |
PMID:21943917 | BSD License | nlx_156079, OMICS_01012, biotools:seek | http://www.force11.org/node/4806 https://bio.tools/seek |
SCR_002651 | SEEK Platform, SEEK for Science | 2025-04-27 10:29:59 | 33 | ||||
|
OMERO Resource Report Resource Website 100+ mentions |
OMERO (RRID:SCR_002629) | OMERO | data processing software, data management software, software resource, data visualization software, image analysis software, software application | Client-server software for management, visualization, and analysis of biological microscopy images. OMERO handles images in a secure central repository where users can view, organize, analyze and share data from anywhere with internet access. Work with images from a desktop app (Windows, Mac or Linux), from the web or from 3rd party software. | light microscopy, electron microscopy, genotype, archiving, data repository, data sharing, image, metadata |
is listed by: FORCE11 is related to: Bio-Formats has parent organization: OME - Open Microscopy Environment |
BBSRC BB/G022585; BBSRC BB/I000755; BBSRC BB/G022577; Jisc REXDAT03 |
PMID:22373911 | GNU General Public License, Or through commercial license from Glencoe Software | nlx_156069 | SCR_002629 | OMERO - Open Microscopy Environment Remote Objects, Open Microscopy Environment Remote Objects, OME Remote Objects | 2025-04-27 10:29:57 | 152 | |||||
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Neuroscience Information Framework Resource Report Resource Website 100+ mentions |
Neuroscience Information Framework (RRID:SCR_002894) | NIF | systems interoperability software, software resource, data repository, service resource, storage service resource, database, data or information resource, portal, software application, software development tool | Framework for identifying, locating, relating, accessing, integrating, and analyzing information from neuroscience research. Users can search for and add neuroscience-related resources at NIF portal and receive and RRID to track and cite resources within scientific manuscripts. | neuroscience, bioinformatics, data sharing, metadata standard, ontology, resource, registry, literature, grant, service, software, neuinfo, cerebral circulation, neuron, antibody diversity, neuroanatomy, atlas, bio.tools, bio.tools |
uses: UBERON recommends: Resource Identification Portal is recommended by: National Library of Medicine is listed by: FORCE11 is listed by: OMICtools is listed by: re3data.org is listed by: National Institute of Mental Health is listed by: Debian is listed by: bio.tools is related to: NIDDK Information Network (dkNET) is related to: SciCrunch is related to: SenseLab is related to: Linked Neuron Data is related to: Whole Brain Catalog is related to: FAIR Data Informatics Laboratory is related to: Atlas Ontology Model has parent organization: University of California at San Diego; California; USA is parent organization of: ModelRun is parent organization of: NIF Web Services is parent organization of: NIF Blog is parent organization of: Integrated is parent organization of: Drug Related Gene Database is parent organization of: DISCO is parent organization of: NIF Data Federation is parent organization of: BioMarkers for SMA Data Portal is parent organization of: SciCrunch Registry is parent organization of: NIF Literature is parent organization of: NeuroLex is parent organization of: NIFSTD is parent organization of: Antibody Registry is parent organization of: ConceptMapper is parent organization of: NIF Dysfunction Ontlogy is parent organization of: NIF Subcellular Ontology is parent organization of: OntoQuest is parent organization of: One Mind Biospecimen Bank Listing is parent organization of: ResearchCrossroads is parent organization of: Neuroscience Gateway is parent organization of: NIF Registry Automated Crawl Data |
NIH Blueprint for Neuroscience Research ; NIDA HHSN27120080035C |
PMID:18946742 PMID:22434839 |
Free, Freely available | nif-0000-25673, OMICS_01190, biotools:neuroscinfframework | https://www.force11.org/node/4695 https://bio.tools/neuroscinfframework https://bio.tools/neuroscinfframework |
SCR_002894 | neuinfo, NIF, neuinfo.org | 2025-04-27 10:30:18 | 128 | ||||
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Research Data Alliance Working Group Resource Report Resource Website 1+ mentions |
Research Data Alliance Working Group (RRID:SCR_018283) | RDA Working Group | portal, topical portal, data or information resource | Guidelines for data deposition in any common data hub or platform to facilitate data sharing in public health emergencies for scientific research. | RDA, COVID19, data deposition guidance, omics, clinical research, epidemiology, social sciences, community participation, data sharing, public health emergency | is listed by: Data and Computational Resources to Address COVID-19 | COVID-19 | European Commission ; National Science Foundation and other U.S. agencies ; Australian Government |
Restricted | SCR_018283 | Research Data Alliance COVID-19, RDA-COVID19 | 2025-04-27 10:41:22 | 5 | ||||||
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i2b2 Research Data Warehouse Resource Report Resource Website 1+ mentions |
i2b2 Research Data Warehouse (RRID:SCR_013276) | i2b2 | data repository, service resource, storage service resource, database, data or information resource | A data warehouse that integrates information on patients from multiple sources and consists of patient information from all the visits to Cincinnati Children''''s between 2003 and 2007. This information includes demographics (age, gender, race), diagnoses (ICD-9), procedures, medications and lab results. They have included extracts from Epic, DocSite, and the new Cerner laboratory system and will eventually load public data sources, data from the different divisions or research cores (such as images or genetic data), as well as the research databases from individual groups or investigators. This information is aggregated, cleaned and de-identified. Once this process is complete, it is presented to the user, who will then be able to query the data. The warehouse is best suited for tasks like cohort identification, hypothesis generation and retrospective data analysis. Automated software tools will facilitate some of these functions, while others will require more of a manual process. The initial software tools will be focused around cohort identification. They have developed a set of web-based tools that allow the user to query the warehouse after logging in. The only people able to see your data are those to whom you grant authorization. If the information can be provided to the general research community, they will add it to the warehouse. If it cannot, they will mark it so that only you (or others in your group with proper approval) can access it. | biomedical, computing, clinical data, platform, clinical, translational research, data sharing, framework, data analysis service, service resource, aging |
is listed by: Biositemaps is related to: SHRINE is related to: National Centers for Biomedical Computing |
NIH | Must login., Work with investigators on a case-by-case basis., The community can contribute to this resource | nif-0000-33024 | SCR_013276 | Informatics for Integrating Biology and the Bedside, Informatics for Integrating Biology and the Bedside Research Data Warehouse | 2025-04-27 10:37:45 | 1 | ||||||
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Neuroimaging Data Model Resource Report Resource Website 1+ mentions |
Neuroimaging Data Model (RRID:SCR_013667) | NIDM | narrative resource, standard specification, data set, data or information resource | Collection of specification documents that define extensions the the W3C PROV standard for the domain of human brain mapping. NIDM uses provenance information as a means to link components from different stages of the scientific research process from dataset descriptors and computational workflow, to derived data and publication. | data sharing, neuroimaging, fmri, mri, dti, semantic web |
is used by: FSL is used by: SPM is used by: Analysis of Functional NeuroImages is listed by: National Institute on Drug Abuse has parent organization: Karolinska Institute; Stockholm; Sweden has parent organization: International Neuroinformatics Coordinating Facility works with: PyNIDM |
Available to the research community | https://github.com/incf-nidash/nidm | SCR_013667 | 2025-04-27 10:37:57 | 9 | ||||||||
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Cancer Genomics of the Kidney (CAGEKID) Resource Report Resource Website 1+ mentions |
Cancer Genomics of the Kidney (CAGEKID) (RRID:SCR_013670) | CAGEKID | organization portal, consortium, portal, data or information resource | The Cancer Genomics of the Kidney (CAGEKID) consortium brings together expertise in clinical care and epidemiology with genomic expertise. This consortium is an effort of the larger International Cancer Genome Consortium (ICGC), which has the goal of obtaining a comprehensive description of genomic, transcriptomic and epigenomic changes in 50 different tumour types and/or subtypes with the aim of elucidating the genomic changes present in the many forms of cancers that contribute to the burden of disease throughout the world. | kidney, biomarkers, data sharing, | has parent organization: International Agency for Research on Cancer | European Union FP7 | SCR_013670 | 2025-04-27 10:37:57 | 4 | |||||||||
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Care Connectivity Consortium Resource Report Resource Website |
Care Connectivity Consortium (RRID:SCR_013671) | CCC | organization portal, consortium, portal, data or information resource | The Care Connectivity Consortium (CCC) is working to address and overcome the most critical and key challenges to effective health information exchange (HIE), to make HIE technologies more versatile and valuable for patients, caregivers, and health care organizations. By developing improved technologies for comprehensive, secure, reliable and innovative HIE, the CCC aims to enable health care provider organizations nationwide to deliver better, timelier, and more informed patient care. | healthcare, data sharing, health information exchange, patients, technology, provider, | is related to: Mayo Clinic | SCR_013671 | 2025-04-27 10:37:58 | 0 | ||||||||||
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metaXplor Resource Report Resource Website |
metaXplor (RRID:SCR_019025) | web application, software resource, data or information resource | Web interfaced application to store, share, explore and manipulate metagenomic data. Interactive viral and microbial metagenomic data manager. Stores large volumes of user defined sample, sequence and assignment information while providing filtering web interface. Offers means to share datasets with collaborators, BLAST external sequences against them, and confirm assignments by running phylogenetic placement. Available as set of Docker containers that make it simple to deploy on various infrastructures. | Data storage, metagenomics, data filtering, data sharing, data exploration, metagenomic data, viral data, microbial data, data manager, datasets sharing, bio.tools |
is listed by: bio.tools is listed by: Debian |
Restricted | biotools:metaxplor | https://metaxplor.cirad.fr/metaXplor/ https://bio.tools/metaxplor |
SCR_019025 | 2025-04-27 10:41:57 | 0 | ||||||||
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electronic Data Archive Library Resource Report Resource Website 1+ mentions |
electronic Data Archive Library (RRID:SCR_019017) | data management software, software resource, data repository, service resource, storage service resource, data or information resource, access service resource, software application | Software tool as Java based framework to store, share and publish research data. Free software infrastructure to FAIRly maintain and publish in-house stored research data. Used for version tracking, metadata management, information retrieval, journal and founding agency proven registration of persistent identifiers (DOI), embedded HTTP(S) server for public data access, access as network file system, and scalable storage backend. | Data storage, data sharing, version tracking, metadata management, information retrieval | has parent organization: Leibniz Institute of Plant Genetics and Crop Plant Research; Saxony-Anhalt; Germany | German Federal Ministry of Education and Research ; European Commission |
PMID:24958009 | Free, Available for download, Freely available | SCR_019017 | e!DAL | 2025-04-27 10:41:56 | 4 | |||||||
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G-Node Data Infrastructure Services Resource Report Resource Website 10+ mentions |
G-Node Data Infrastructure Services (RRID:SCR_015864) | GIN | production service resource, data repository, data analysis service, service resource, storage service resource, analysis service resource | Data services that provides a platform for comprehensive and reproducible management and sharing of neuroscience data. Building on well established versioning technology, GIN offers the power of a web based repository management service combined with a distributed file storage. | systems neuroscience, data sharing, data management, data publication, research data workflow, data analysis |
uses: Git has parent organization: German Neuroinformatics Node (G-Node) |
BMBF 01GQ1302 | DOI:10.12751/incf.ni2017.0040 | Open source, Available to the scientific community, The scientific community can contribute to this resource | http://www.g-node.org/gin https://www.re3data.org/repository/r3d100012439 |
SCR_015864 | GIN: Modern Research Data Management for Neuroscience | 2025-04-27 10:39:33 | 14 | |||||
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NERC Environmental Bioinformatics Centre Resource Report Resource Website 1+ mentions |
NERC Environmental Bioinformatics Centre (RRID:SCR_000526) | NEBC | data repository, service resource, storage service resource, database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 1, 2023. Data sharing platform based on the ISA software suite - including an annotation tool and a database - that holds environmental omic data in standards-compliant format. It uses various approaches to provide new discovery, interoperability and integration opportunities for environmental scientists, including the development of tools, databases, standard and ontologies. The main tool for collecting environmental omics data from researchers is the EnvBase data catalogue. The NEBC Toolbox contains a range of tools developed by NEBC to support environmental researchers. The data include next generation sequencing, microarray and ABI sequencing technologies. ISAconfigurator and ISAcreator ensure that the extensive information relating to environmental sampling is consistently collected by the NERC experimentalists, according to the appropriate MIBBI checklist(s), and then reported centrally to NEBC. A local instance of the BII runs as an internal prototype database that will soon provide public and private access to NERC research projects outputs, as appropriate. In accordance with the NERC Data Policy, and when data sets are declared ready for public release, the NEBC team will use the ISAconverter to perform (combined) submissions to the appropriate public repositories (ENA, or SRA, ArrayExpress and PRIDE) to ensure long term stewardship. | environment, interoperability, standard, bioinformatics, data management, computing, data sharing, next generation sequencing, metadata standard, microarray, abi sequencing, cloud computing |
recommends: ISA Infrastructure for Managing Experimental Metadata recommends: Bio-Linux has parent organization: Natural Environment Research Council |
BBSRC ; NERC |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_51307 | SCR_000526 | NERC Environmental Bioinformatics Center | 2025-04-27 10:28:21 | 1 | ||||||
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MRI Defacer Resource Report Resource Website |
MRI Defacer (RRID:SCR_002424) | mri_deface | data processing software, software application, software resource, image processing software | Tool to remove facial features from an MRI structural image for the purpose of de-identification. | console (text based), intensity operations, linux, macos, mgh/mgz, magnetic resonance, posix/unix-like, resampling, spatial transformation, surface analysis, hipaa, data sharing, de-identification | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | FreeSurfer License | nlx_155798 | http://www.nitrc.org/projects/mri_deface | SCR_002424 | mri deface | 2025-04-27 10:29:42 | 0 | ||||||
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Einstein-Montefiore ICTR Research Informatics Core Resource Report Resource Website |
Einstein-Montefiore ICTR Research Informatics Core (RRID:SCR_003451) | Einstein-Montefiore ICTR RIC | data repository, service resource, storage service resource, community building portal, database, data or information resource, portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 6, 2023. Primary informatics resource for joint research efforts of the Albert Einstein College of Medicine and Montefiore Medical Center to facilitate the study and understanding of biological processes, clinical disorders, pathologic abnormalities, and the relationships among them, using a wide variety of informatics techniques, applications, and user training. Their services include: * Collaboration on research design to enable effective data management throughout all phases of a project * Provision of management capability for large volumes of data generated by microarrays and related technologies * Provision and supports a software toolchest for data capture, retrieval, and analysis * Design and implementation of custom interfaces to incorporate existing or separately designed databases into the central data management architecture * Support for data management for the Biorepository, to enhance specimen storage, identification, and linkage with clinical data * Ensuring conformity of data elements and structures to national standards via participation in standards organizations, facilitating intramural and extramural collaboration * Providing individualized support to end-users with bioinformatics training needs * Serving as a bioinformatics liaison to other research institutes and organizations * Providing data management support for clinical research * Providing a common, secure repository for clinical, experimental, and biosample storage data | abnormality, application, biological, biorepository, clinical, compute, disorder, informatics, medicine, organization, pathologic, research, specimen, technique, technology, collaboration, data management, data sharing, infrastructure, workbench, biostatistics, data repository, bioinformatics, environment, microarray, gene, clinical research |
is listed by: Biositemaps is related to: Einstein-Montefiore Institute for Clinical and Translational Research Biorepository has parent organization: Albert Einstein College of Medicine; New York; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-33284 | SCR_003451 | Einstein-Montefiore Institute for Clinical & Translational Research - Research Informatics Core, Research Informatics Core - Einstein-Montefiore Institute for Clinical and Translational Research (ICTR), Einstein-Montefiore Institute for Clinical and Translational Research - Research Informatics Core | 2025-04-27 10:30:34 | 0 | |||||||
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Globus Genomics Resource Report Resource Website 10+ mentions |
Globus Genomics (RRID:SCR_011887) | Globus Genomics | service resource, storage service resource, data repository | Software-as-a-service for big data management offering fast, reliable, secure file transfer and sharing services to non-profit researchers. It combines state-of-the-art algorithms, data management tools, a graphical workflow environment, and an elastic computing infrastructure making it easy to manipulate, store, and share your data, no matter how big it gets. | data sharing, data management, genomics |
is listed by: OMICtools has parent organization: Argonne National Laboratory |
OMICS_01220 | SCR_011887 | 2025-04-27 10:36:38 | 24 | |||||||||
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i2b2 Cross-Institutional Clinical Translational Research project Resource Report Resource Website |
i2b2 Cross-Institutional Clinical Translational Research project (RRID:SCR_003367) | i2b2CICTR, i2b2-CICTR | portal, topical portal, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 08, 2013. A two year Clinical and Translational Science Award (CTSA) supplement that set up a SHRINE (Shared Health Research Informatics NEtwork) network to create an information exchange environment that successfully shared 4.2M deidentified patient records. The network successfully linked i2b2 sites at UW, UCSF, UC Davis and Harvard Catalyst. Recombinant Data Corporation was actively involved in this implementation. This is a collaborative information exchange pilot project to adapt and extend data discovery tools and processes to enhance research design and retrospective data study capabilities for clinical translational investigators. The novel approach of this project will be to incrementally build a common technical, semantic and appropriately secure and governed distributed system in close partnership with active researchers at three large and geographically distributed academic medical centers. This collaboration will extend the Informatics for Integrating Biology and the Bedside (i2b2) software architecture developed by the Harvard based National Center for Biomedical Computing (NCBC) to support multi-institution data query capabilities. The anticipated outcome of this two-year project is to make high-level anonymized descriptive characteristics of population-level data discoverable for research design, hypothesis generation and retrospective data studies. | exchange, biomedical, clinical, medical, pilot, retrospective, translational, integration, interoperability, information exchange environment, software network, data sharing, network, federation |
is listed by: Biositemaps is related to: SHRINE has parent organization: Informatics for Integrating Biology and the Bedside has parent organization: University of Washington; Seattle; USA |
NCRR Contract HHSN268200700031C | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-33108 | SCR_003367 | 2025-04-27 10:30:31 | 0 |
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