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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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UNAVCO Resource Report Resource Website 10+ mentions |
UNAVCO (RRID:SCR_006706) | UNAVCO | consortium, data or information resource, organization portal, portal | A non-profit university-governed consortium that facilitates geoscience research and education using geodesy. It rovides access to and submission of Geodetic GPS / GNSS Data, Geodetic Imaging Data, Strain and Seismic Borehole Data, and Meteorological Data. Data access web services/API provides the ability to use a command line interface to query metadata and obtain URLs to data and products. UNAVCO also provides a variety of software, including web applications, and desktop utilities for scientists, instructors, students, and others. Web-based data visualization and mapping tools provide users with the ability to view postprocessed data while web-based geodetic utilities provide ancillary information. Downloadable stand-alone software utilities include applications for configuring instruments, managing data collection, download and transfer, and performing computations on the raw data, e.g., data pre-processing or processing. The UNAVCO Facility in Boulder, Colorado is the primary operational activity of UNAVCO and exists to support university and other research investigators in their use of geophysical sensor technology for Earth sciences research. The Facility performs this task in part by archiving GNSS/GPS data and data products for current and future applications. Other data types that scientists use for Earth deformation studies are also held in the UNAVCO Archive collections. UNAVCO operates a community Archive, which provides long-term secure storage and easy retrieval of GNSS data, strain data, various derived products and related metadata. The Archive primarily stores high-precision geodetic data used for research purposes, collected under National Science Foundation and NASA sponsored projects. UNAVCO provides many learning opportunities including: Short Courses and Workshops, Educational Resources, RESESS Research Student Internships, and Technical Training. | gps, geodesy, motion, rock, ice, water, earth surface, gnss, geoscience, geophysical survey, geophysical observatory, geophysical instrument, earth sciences, global positioning system, data archive, geology, geological mapping |
is listed by: re3data.org is listed by: CINERGI is parent organization of: UNAVCO Geodetic Web Services |
NSF ; NASA |
The community can contribute to this resource | ISNI: 0000 0004 0505 9642, Wikidata: Q7865191, grid.239102.b, nlx_154719 | https://ror.org/02n9tn974 | SCR_006706 | University NAVSTAR Consortium | 2026-09-19 12:51:16 | 32 | |||||
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1000 Genomes: A Deep Catalog of Human Genetic Variation Resource Report Resource Website 5000+ mentions |
1000 Genomes: A Deep Catalog of Human Genetic Variation (RRID:SCR_006828) | 1000 Genomes | consortium, data or information resource, data set, database, organization portal, portal | International collaboration producing an extensive public catalog of human genetic variation, including SNPs and structural variants, and their haplotype contexts, in an effort to provide a foundation for investigating the relationship between genotype and phenotype. The genomes of about 2500 unidentified people from about 25 populations around the world were sequenced using next-generation sequencing technologies. Redundant sequencing on various platforms and by different groups of scientists of the same samples can be compared. The results of the study are freely and publicly accessible to researchers worldwide. The consortium identified the following populations whose DNA will be sequenced: Yoruba in Ibadan, Nigeria; Japanese in Tokyo; Chinese in Beijing; Utah residents with ancestry from northern and western Europe; Luhya in Webuye, Kenya; Maasai in Kinyawa, Kenya; Toscani in Italy; Gujarati Indians in Houston; Chinese in metropolitan Denver; people of Mexican ancestry in Los Angeles; and people of African ancestry in the southwestern United States. The goal Project is to find most genetic variants that have frequencies of at least 1% in the populations studied. Sequencing is still too expensive to deeply sequence the many samples being studied for this project. However, any particular region of the genome generally contains a limited number of haplotypes. Data can be combined across many samples to allow efficient detection of most of the variants in a region. The Project currently plans to sequence each sample to about 4X coverage; at this depth sequencing cannot provide the complete genotype of each sample, but should allow the detection of most variants with frequencies as low as 1%. Combining the data from 2500 samples should allow highly accurate estimation (imputation) of the variants and genotypes for each sample that were not seen directly by the light sequencing. All samples from the 1000 genomes are available as lymphoblastoid cell lines (LCLs) and LCL derived DNA from the Coriell Cell Repository as part of the NHGRI Catalog. The sequence and alignment data generated by the 1000genomes project is made available as quickly as possible via their mirrored ftp sites. ftp://ftp.1000genomes.ebi.ac.uk ftp://ftp-trace.ncbi.nlm.nih.gov/1000genomes | genetic variation, gene, next-generation sequencing, sequence, alignment, genome, single-nucleotide polymorphism, structural variant, haplotype, genome-wide association study, pharmacology, genetics, biomarker, consortium, data sharing, genotype, phenotype, FASEB list |
uses: NHGRI Sample Repository for Human Genetic Research is used by: BioSample Database at EBI is listed by: OMICtools is listed by: re3data.org is listed by: Consortia-pedia is related to: MOSAIK is related to: ART is related to: SNAP - SNP Annotation and Proxy Search has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom has parent organization: Harvard Medical School; Massachusetts; USA has parent organization: Broad Institute has parent organization: NCBI has parent organization: European Bioinformatics Institute has parent organization: National Human Genome Research Institute |
Wellcome Trust Sanger Institute; Hinxton; United Kingdom ; Beijing Genomics Institute; Shenzhen; China ; NHGRI ; 454 Life Sciences Roche ; Life Technologies ; Illumina |
Free, Public, Restrictions apply, Http://www.1000genomes.org/data#DataAccess | r3d100010180, nlx_143819, OMICS_00261 | https://doi.org/10.17616/R3CP4M | SCR_006828 | International 1000 Genomes Project, 1000 Genomes Project | 2026-09-19 12:51:19 | 5881 | |||||
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IntAct Resource Report Resource Website 1000+ mentions |
IntAct (RRID:SCR_006944) | IntAct | data or information resource, data repository, database, service resource, storage service resource | Open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions. Direct user submissions of molecular interaction data are encouraged, which may be deposited prior to publication in a peer-reviewed journal. The IntAct Database contains (Jun. 2014): * 447368 Interactions * 33021 experiments * 12698 publications * 82745 Interactors IntAct provides a two-tiered view of the interaction data. The search interface allows the user to iteratively develop complex queries, exploiting the detailed annotation with hierarchical controlled vocabularies. Results are provided at any stage in a simplified, tabular view. Specialized views then allows "zooming in" on the full annotation of interactions, interactors and their properties. IntAct source code and data are freely available. | protein domain, motif, protein interaction, molecular interaction, interaction, protein, binary interaction, complex, data set, protein-protein interaction, pathway, small molecule-protein, nucleic acid-protein, small molecule, nucleic acid, protein binding, chromatin, cancer, apoptosis, molecular biology, virus, source code, isoform, gold standard |
is used by: ChannelPedia is used by: MINT is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: 3DVC is listed by: re3data.org is listed by: OMICtools is related to: 3D-Interologs is related to: IMEx - The International Molecular Exchange Consortium is related to: MPIDB is related to: TissueNet - The Database of Human Tissue Protein-Protein Interactions is related to: InteroPorc is related to: Interaction Reference Index is related to: Pathway Commons is related to: ConsensusPathDB is related to: FlyMine is related to: IMEx - The International Molecular Exchange Consortium is related to: Integrated Molecular Interaction Database is related to: VirHostNet: Virus-Host Network is related to: PSICQUIC Registry is related to: UniProt is related to: SIB Swiss Institute of Bioinformatics is related to: I2D is related to: InnateDB is related to: MatrixDB is related to: MBInfo is related to: AgBase is related to: Cardiovascular Gene Ontology Annotation Initiative is related to: PSI-MI is related to: Agile Protein Interactomes DataServer has parent organization: European Bioinformatics Institute works with: IMEx - The International Molecular Exchange Consortium |
European Union contract FP7-HEALTH-2007-223411; European Union contract FP7-HEALTH-2007-200767 |
PMID:24234451 PMID:22121220 PMID:19850723 PMID:17145710 PMID:14681455 |
Apache License, v2, (software), Creative Commons Attribution License, (data), The community can contribute to this resource | OMICS_01918, r3d100010671, nif-0000-03026 | https://doi.org/10.17616/R3QS4R | SCR_006944 | IntAct | 2026-09-19 12:51:21 | 1955 | ||||
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Cancer Imaging Archive (TCIA) Resource Report Resource Website 100+ mentions |
Cancer Imaging Archive (TCIA) (RRID:SCR_008927) | TCIA | catalog, data or information resource, data repository, data set, database, image repository, service resource, storage service resource | Archive of medical images of cancer accessible for public download. All images are stored in DICOM file format and organized as Collections, typically patients related by common disease (e.g. lung cancer), image modality (MRI, CT, etc) or research focus. Neuroimaging data sets include clinical outcomes, pathology, and genomics in addition to DICOM images. Submitting Data Proposals are welcomed. | dicom, imaging, ct, pet, pt, x-ray, mri, magnetic resonance, medical, clinical, research, clinical neuroinformatics, computed tomography, dicom, imaging genomics, magnetic resonance, pet, spect, test data, web service, image collection, image, FASEB list |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing is affiliated with: BraTumIA (Brain Tumor Image Analysis) is related to: NIH Data Sharing Repositories is related to: NCI Imaging Data Commons has parent organization: Frederick National Laboratory for Cancer Research has parent organization: NCI-Frederick |
Cancer | NCI | Restricted | DOI:10.25504/FAIRsharing.jrfd8y, DOI:10.17616/R3NH0V, DOI:10.7937, nlx_151749, r3d100011559 | http://www.nitrc.org/projects/tcia, http://www.cancerimagingarchive.net/, http://www.cancerimagingarchive.net/primary-data/, https://wiki.cancerimagingarchive.net/display/Public/Collections, https://doi.org/10.17616/R3NH0V, https://doi.org/10.17616/r3NH0V, https://doi.org/10.7937/, https://dx.doi.org/10.7937/, https://fairsharing.org/10.25504/FAIRsharing.jrfd8y, https://doi.org/10.17616/R3NH0V, https://doi.org/10.17616/R3NH0V | SCR_008927 | TCIA, Cancer Imaging Archive, The Cancer Imaging Archive (TCIA), Cancer Imaging Archive (TCIA), The Cancer Imaging Archive | 2026-09-19 12:51:47 | 415 | ||||
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Biodiversity Heritage Library Resource Report Resource Website 1+ mentions |
Biodiversity Heritage Library (RRID:SCR_008969) | BHL | bibliography, data or information resource, database | Collection of legacy literature in biodiversity assembled by an international consortium of natural history and botanical libraries. It also serves as the foundational literature component of the Encyclopedia of Life. Browse by author, title, subject, collection, map, year, language, and contributor. Taxonomic search using UBio. Also supports data export and a variety of machine interfaces. | literature, taxonomy, scientific illustration, botany, biology, natural history, biodiversity, extinct animal, herbaria, ecology, botanical library, extinct |
is listed by: re3data.org is related to: EOL - Encyclopedia of Life |
MacArthur Foundation via the Encyclopedia of Life ; Gordon and Betty Moore Foundation ; Richard Lounsbery Foundation ; Institute of Museum and Library Services ; Smithsonian Institution ; Atherton Seidell Endowment Fund |
If files in, Public domain, Acknowledgement requested, If files are from a copyrighted work for which we have obtained permission, Then all of the files on http://www.biodiversitylibrary.org are, Creative Commons Attribution-NonCommercial-ShareAlike License, v3, If a work in the BHL is published in 1923 or after, The work may be in copyright. More at, Http://biodivlib.wikispaces.com/Licensing+and+Copyright | nlx_152035 | SCR_008969 | Biodiversity Library | 2026-09-19 12:51:47 | 5 | ||||||
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FORCE11 Resource Report Resource Website 10+ mentions |
FORCE11 (RRID:SCR_005334) | FORCE11 | blog, community building portal, data or information resource, knowledge environment, narrative resource, portal | A collaboration which works to transform scholarly communications through advanced use of computers and the Web. FORCE11 advocates the digital publishing of papers in order to enable more effective scholarly communication. The virtual community also advocates the publication of software tools and research communication by means of social media channels. As such, FORCE11 provides access to information and tools for the wider scientific community. | scholarly communication, scholarship, dissemination, data sharing, knowledge, information technology, semantics, digital publishing, information gathering, research communication, e-scholarship, digital object, scientific communication |
lists: Scholarly Ontologies Project lists: Academia.edu lists: StratML lists: Evernote lists: NPG publishing format lists: Fiduswriter lists: Altmetric Bookmarklet lists: Altmetric Explorer lists: Epistemio lists: Hypothes.is lists: Bio-Formats lists: iSpyBio.com lists: BioLexicon lists: Craig Mod lists: KLEIO lists: aTag Generator lists: Knowledge Engineering from Experimental Design lists: Utopia Docs lists: Zebrafish - SCORE Imaging: Specimen in a Corrected Optical Rotational Enclosure lists: Semantic Measures Library lists: Open Education Database lists: Brainspell lists: IPython lists: Adobe FormsCentral lists: Altmetric API lists: myExperiment lists: ISA Infrastructure for Managing Experimental Metadata lists: Minimum Information for Biological and Biomedical Investigations lists: A modular structure for scientific articles in an electronic environment lists: Liquid Publications: Scientific Publications meet the Web lists: AQnowledge Bookmarklet lists: Authorea lists: Bamboo DiRT lists: Altmetric Badges lists: ESIP Data Management Short Course for Scientists lists: Etherpad lists: Commons In A Box lists: CKAN lists: DMPTool lists: eScholarship lists: Git2PROV lists: OMERO lists: GitHub lists: GROTOAP lists: ImpactStory lists: JCB DataViewer lists: Memento lists: OME-TIFF Format lists: OpenDOAR lists: Open Journal Systems lists: Paper Rejection Repository lists: PLoS Impact Explorer lists: RDFaCE lists: Scholarly Open Access lists: ShareLaTeX lists: Mendeley lists: W3C Provenance Incubator Group Wiki lists: A.nnotate lists: Annotation Ontology lists: Support-of-PDF-annotations lists: Neuroscience Information Framework lists: AlzSWAN Knowledge Base lists: ResearchCompendia lists: resExomeDB lists: SobekCM lists: W3C Open Annotation Community Group lists: Webmaker lists: Wikispaces lists: Mobile Assay lists: WorkingWiki lists: Overleaf lists: Xournal lists: Citation Style Language lists: EnablingOpenScholarship lists: JournalGuide lists: Mindtouch DekiWiki lists: Knowledge Blog lists: DataCite lists: FAIRsharing lists: FigShare lists: CiTO - the Citation Typing Ontology lists: DOAJ - Directory of Open Access Journals lists: Code4Lib Journal WordPress Customizations lists: U-Compare lists: SciCrunch Registry lists: Google Docs lists: CSIBS lists: Europe PubMed Central lists: ORNL DAAC Data Product Citation Policy lists: Pensoft lists: OpenCalais lists: Universal Numerical Fingerprint lists: FAIRSharing Catalogue of Standards lists: Nanopub.org lists: JISC Open Citations lists: W3C Provenance Working Group lists: Workflow4Ever lists: Scholarly Electronic Publishing Bibliography lists: ROARMAP: Registry of Open Access Repositories Mandatory Archiving Policies lists: ROAR lists: total impact.org lists: Publish or perish lists: Scalar lists: PDFX lists: lapdftext lists: Cohere lists: Data Citation Awareness lists: DataCite Ontology lists: Semantic MediaWiki lists: Rubriq lists: VisTrails lists: RSC Prospect lists: HyBrow (Hypothesis Browser) lists: Biotea lists: crowdLabs lists: Argumentative Zoning: Information Extraction from Scientific Articles lists: Synapse lists: BioCreative lists: EZID lists: ResearchGate lists: F1000: Faculty of 1000 Post-Publication Peer Review lists: Acumen Consortium lists: DOI lists: GREC Corpus lists: National Centre for Text Mining lists: SPAR - Semantic Publishing and Referencing Ontologies lists: re3data.org lists: DataUp lists: Open Archives Initiative - Object Reuse and Exchange Initiative lists: Sapienta lists: OBO lists: GENIA Project: Mining literature for knowledge in molecular biology lists: ORCID - Open Researcher and Contributor ID lists: Wikibooks lists: CERMINE lists: CiteAb lists: iAnnotate lists: Eagle I lists: AcroMine lists: FACTA+. lists: Open Provenance Model lists: RightField lists: SEEK lists: BioPortal lists: Reflect lists: Ontology Development and Information Extraction lists: PubMed lists: Open PHACTS lists: NIFSTD lists: Open Provenance Model Vocabulary lists: MEDIE lists: Ontology for Biomedical Investigations lists: Antibody Registry lists: Semantic Web Applications in Neuromedicine (SWAN) Ontology is related to: ShareLaTeX is related to: ResearchCompendia is related to: Overleaf has parent organization: University of California at San Diego; California; USA |
Gordon and Betty Moore Foundation | Free, Public, The community can contribute to this resource, Acknowledgement requested | nlx_149434 | SCR_005334 | FORCE11 - the Future of Research Communications and e-Scholarship, Force 11 | 2026-09-19 12:50:51 | 15 | ||||||
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Crystallography Open Database (COD) Resource Report Resource Website 10+ mentions |
Crystallography Open Database (COD) (RRID:SCR_005874) | COD | data or information resource, data repository, database, service resource, storage service resource | Database of crystal structures of organic, inorganic, metal-organic compounds and minerals, excluding biopolymers. It currently contains ~291204 entries (July 2014) in crystallographic information file format, with nearly full coverage of the International Union of Crystallography publications, and is growing in size and quality. Deposit your data: An interface allows you to upload, validate and edit CIF files before submitting them for deposition. | inorganic, metal-organic, organic, molecule, structure, small molecule, compound, mineral, crystal structure, crystallography, polymorphism, crystal, organic compound |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org has parent organization: Vilnius University; Vilnius; Lithuania |
Research Council of Lithuania contract MIP-124/2010 | PMID:22070882 PMID:22477773 |
Public domain, The community can contribute to this resource, Acknowledgement requested | r3d100010213, nlx_149430 | https://doi.org/10.17616/R37S31 | SCR_005874 | COD - Crystallography Open Database, Crystallography Open Database, Crystallography Open Database (COD), COD | 2026-09-19 12:51:00 | 23 | ||||
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National Archive of Computerized Data on Aging (NACDA) Resource Report Resource Website 10+ mentions |
National Archive of Computerized Data on Aging (NACDA) (RRID:SCR_005876) | NACDA | data or information resource, data repository, database, portal, service resource, storage service resource, topical portal | Archive of data relevant to gerontological and aging research. Used to advance research on aging. Subjects include demographic, social, economic, and psychological characteristics of older adults, physical health and functioning of older adults, and health care needs of older adults. NACDA staff represents team of professional researchers, archivists and technicians who work together to obtain, process, distribute, and promote data relevant to aging research. | gerontology, secondary analysis, data set, age, intelligence, life span, productive, late adult human |
is recommended by: National Library of Medicine lists: Social Environment and Biomarkers of Aging Study in Taiwan lists: Advanced Cognitive Training for Independent and Vital Elderly (ACTIVE) is listed by: re3data.org is related to: Alameda County Health and Ways of Living Study is related to: Charleston Heart Study is related to: Census Microdata Samples Project is related to: Chinese Longitudinal Healthy Longevity Survey (CLHLS) is related to: Early Indicators of Later Work Levels Disease and Death (EI) - Union Army Samples Public Health and Ecological Datasets is related to: Cross-National Equivalent Files is related to: National Survey of Midlife Development in the United States is related to: Precursors of Premature Disease and Death is related to: New Beneficiary Data System is related to: National Survey of Self-Care and Aging is related to: Aging Status and Sense of Control (ASOC) has parent organization: Inter-university Consortium for Political and Social Research (ICPSR) is parent organization of: Established Populations for Epidemiologic Studies of the Elderly is parent organization of: National Survey of the Japanese Elderly is parent organization of: Piedmont Health Survey of the Elderly is parent organization of: Second Malaysian Family Life Survey is parent organization of: Longitudinal Study of Generations is parent organization of: Longitudinal Study of Elderly Mexican American Health is parent organization of: Matlab Health and Socio-Economic Survey is parent organization of: National Long Term Care Survey is parent organization of: National Nursing Home Survey Follow-Up is parent organization of: National Social Life Health and Aging Project (NSHAP) is parent organization of: National Survey of Families and Households |
Aging | NIA | Restricted | nlx_149438, r3d100010259 | https://www.icpsr.umich.edu/icpsrweb/NACDA/index.jsp, https://doi.org/10.17616/R3Z31W | SCR_005876 | , NACDA, National Archive of Computerized Data on Aging | 2026-09-19 12:51:01 | 21 | ||||
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Dryad Digital Repository Resource Report Resource Website 1000+ mentions |
Dryad Digital Repository (RRID:SCR_005910) | data or information resource, data repository, database, service resource, storage service resource | International, curated, digital repository that makes the data underlying scientific publications discoverable, freely reusable, and citable. Particularly data for which no specialized repository exists. Provides the infrastructure for, and promotes the re-use of, data underlying the scholarly literature. Governed by a nonprofit membership organization. Membership is open to any stakeholder organization, including but not limited to journals, scientific societies, publishers, research institutions, libraries, and funding organizations. Most data are associated with peer-reviewed articles, although data associated with non-peer reviewed publications from reputable academic sources, such as dissertations, are also accepted. Used to validate published findings, explore new analysis methodologies, repurpose data for research questions unanticipated by the original authors, and perform synthetic studies.UC system is member organization of Dryad general subject data repository. | international, digital, repository, curated, data, collection, scientific, medical, publication, dataset, FASEB list |
is used by: NIH Heal Project is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: CINERGI is listed by: re3data.org is listed by: Connected Researchers is listed by: DataCite is listed by: FAIRsharing is related to: ImpactStory is related to: Connected Researchers has parent organization: NESCent - National Evolutionary Synthesis Center has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA has parent organization: University of California; California; USA |
European Commission ; Institute for Museum and Library Services ; JISC ; NSF |
DOI:10.25504/FAIRsharing.wkggtx, DOI:10.5061, r3d100000044, DOI:10.15146, DOI:10.17616/R34S33, nlx_149486 | https://doi.org/10.17616/R34S33, https://doi.org/10.5061/, https://doi.org/10.15146, https://dx.doi.org/10.5061/, https://dx.doi.org/10.15146, https://fairsharing.org/10.25504/FAIRsharing.wkggtx, https://api.datacite.org/dois?prefix=10.18736, https://api.datacite.org/dois?prefix=10.6076, , https://doi.org/10.17616/R34S33 | http://www.datadryad.org/ | SCR_005910 | , The Dryad Digital Repository, Dryad Digital Repository, Dryad | 2026-09-19 12:51:01 | 2790 | ||||||
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NIMH Data Archive Resource Report Resource Website 100+ mentions |
NIMH Data Archive (RRID:SCR_004434) | NDA | data or information resource, data repository, database, service resource, storage service resource | The National Institute of Mental Health Data Archive (NDA) makes available human subjects data collected from hundreds of research projects across many scientific domains. Research data repository for data sharing and collaboration among investigators. Used to accelerate scientific discovery through data sharing across all of mental health and other research communities, data harmonization and reporting of research results. Infrastructure created by National Database for Autism Research (NDAR), Research Domain Criteria Database (RDoCdb), National Database for Clinical Trials related to Mental Illness (NDCT), and NIH Pediatric MRI Repository (PedsMRI). | afni brik, ascii, bshort, bfloat, connectome file format, cifti, clinical neuroinformatics, cor, dicom, imaging genomics, inc, minc2, nifti, os independent, philips par/rec, tex, vrml, phenotype, neuroimaging, genomic, gender, male, female, dti, fmri, mri, spectroscopy, eeg, microarray, snp, cnv, next-generation sequencing, gene regulation, gene expression, genotyping, pedigree, clinical assessment, FASEB list |
uses: HED Tags is used by: National Database for Clinical Trials related to Mental Illness is used by: RDoCdb is used by: NIH Heal Project is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: re3data.org is related to: National Database for Clinical Trials related to Mental Illness is related to: RDoCdb has parent organization: National Institute of Mental Health hosts: GUID Tool |
Autism, Autism spectrum disorder, Asperger Syndrome, Normal control, Sibling control, Parental control, Fragile X syndrome | Center for Information Technology ; NICHD ; NIEHS ; NIMH ; NINDS |
Restricted | nlx_143735, r3d100010717, r3d100012653 | http://www.nitrc.org/projects/ndarportal, https://data-archive.nimh.nih.gov/, https://doi.org/10.17616/R37K63, https://doi.org/10.17616/R3XV5P | http://ndar.nih.gov/ | SCR_004434 | NDAR, National Database for Autism Research, National Institute of Mental Health Data Archive, National Database for Autism Research (NDAR) | 2026-09-19 12:50:37 | 424 | |||
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Data.gov Resource Report Resource Website 10+ mentions |
Data.gov (RRID:SCR_004712) | Data.gov | catalog, data or information resource, database | Catalog of data sets that are generated and held by the Federal Government, including data, tools and resources to conduct research, develop web and mobile applications, design data visualizations, etc. Data.gov provides descriptions of the Federal datasets (metadata), information about how to access the datasets, and tools that leverage government datasets. The data catalogs will continue to grow as datasets are added. Federal, Executive Branch data are included in the first version of Data.gov. | communication, transportation, culture, ocean, disease, health, agriculture, atate, economics, business, climatology, atmosphere, politics, culture, ecology, biology, data archive, earth science, social science, education, energy, finance, geospatial, global development, skill, job, public safety, science, research, weather, city, consumer, county, ethics, law, manufacturing, data set |
is listed by: re3data.org is parent organization of: Data.gov Science and Research Data Catalog is parent organization of: HHS.gov/Open: Tools is parent organization of: Health.Data.gov is parent organization of: Open HHS Blog |
United States Government | Public | nlx_70953, r3d100010078 | https://explore.data.gov/, http://catalog.data.gov/dataset, https://doi.org/10.17616/R3D30J | http://www.data.gov/catalog | SCR_004712 | Data.gov Catalogs | 2026-09-19 12:50:41 | 35 | ||||
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RHEA Resource Report Resource Website 100+ mentions |
RHEA (RRID:SCR_004713) | RHEA | data or information resource, data repository, database, service resource, storage service resource | Manually annotated reaction database where all reaction participants (reactants and products) are linked to the ChEBI database (Chemical Entities of Biological Interest) which provides detailed information about structure, formula and charge. Rhea provides built-in validations that ensure both elemental and charge balance of the reactions. The database has been populated with the reactions found in the Enzyme Commission (EC) list (and in the IntEnz and ENZYME databases), extending it with additional known reactions of biological interest. While the main focus of Rhea is enzyme-catalyzed reactions, other biochemical reactions are also included. Rhea is a manually annotated resource and it provides: stable reaction identifiers for each of its reactions; directionality information if the physiological direction of the reaction is known; the possibility to link several reactions together to form overall reactions; extensive cross-references to other resources including enzyme-catalyzed and other metabolic reactions, such as the EC list (in IntEnz), KEGG, MetaCyc and UniPathway; and chemical substructure and similarity searches on compounds in Rhea. | biochemical reaction, reaction, enzyme-catalyzed reaction, spontaneous reaction, enzyme, chemical reaction, gold standard, FASEB list |
uses: CHEBI is used by: SwissLipids is listed by: re3data.org is related to: European Bioinformatics Institute has parent organization: SIB Swiss Institute of Bioinformatics |
Swiss Federal Government SERI ; SystemsX.ch ; Swiss Initiative in Systems Biology ; EMBL ; European Union |
PMID:27789701 | Public, Free, Acknowledgement requested, Available for download, The community can contribute to this resource | r3d100010891, nlx_70986 | https://doi.org/10.17616/R3332H | SCR_004713 | 2026-09-19 12:50:41 | 185 | |||||
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TAIR Resource Report Resource Website 5000+ mentions |
TAIR (RRID:SCR_004618) | TAIR, AGI LocusCode | data or information resource, database | Database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. Data available includes the complete genome sequence along with gene structure, gene product information, metabolism, gene expression, DNA and seed stocks, genome maps, genetic and physical markers, publications, and information about the Arabidopsis research community. Gene product function data is updated every two weeks from the latest published research literature and community data submissions. Gene structures are updated 1-2 times per year using computational and manual methods as well as community submissions of new and updated genes. TAIR also provides extensive linkouts from data pages to other Arabidopsis resources. The data can be searched, viewed and analyzed. Datasets can also be downloaded. Pages on news, job postings, conference announcements, Arabidopsis lab protocols, and useful links are provided. | genetic, molecular biology, gene, genome, structure, product, metabolism, gene expression, dna, seed stock, genome map, genetic marker, physical marker, genome sequence, gene product, blast, experimental protocol, gold standard |
is used by: NIF Data Federation is listed by: OMICtools is listed by: re3data.org is listed by: DataCite is related to: AmiGO is related to: Saskatoon Arabidopsis T-DNA mutant population SK Collection is related to: CLENCH has parent organization: Carnegie Institution for Science is parent organization of: TAIR Keyword Browser is parent organization of: PubSearch |
NSF DBI-0850219; corporate and nonprofit organizations |
PMID:22140109 PMID:17986450 PMID:12444417 PMID:12519987 PMID:18287693 |
r3d100010185, nlx_61477, OMICS_01662 | https://doi.org/10.17616/R3QW21 | SCR_004618 | AGI LocusCode, The Arabidopsis Information Resource | 2026-09-19 12:50:40 | 9170 | |||||
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Nucleotide database Resource Report Resource Website 100+ mentions |
Nucleotide database (RRID:SCR_004630) | nucest | data or information resource, data repository, database, service resource, storage service resource | Nucleotide database as collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery. | Genome, gene, transcript sequence data, GenBank, RefSeq, TPA, PDB, gold standard |
is listed by: re3data.org is related to: BMAP cDNA Resources is related to: GenBank has parent organization: NCBI |
PMID:8401577 | Free, Freely available | SCR_016578, nlx_62971 | SCR_004630 | 2026-09-19 12:50:40 | 167 | |||||||
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Database of Genomic Variants Archive (DGVa) Resource Report Resource Website 100+ mentions |
Database of Genomic Variants Archive (DGVa) (RRID:SCR_004896) | DGVa | data or information resource, data repository, database, service resource, storage service resource | Public repository that accepts direct submissions and provides archiving, accessioning and distribution of publicly available genomic structural variants, in all species. Variants are accessioned at the study and sample level, granting stable identifiers that can be used in publications. DGVa data is integrated with other EBI resources, including comprehensive EBI search and Ensembl genome browser. Exchanges data with companion database, dbVar, at National Center for Biotechnology Information.NOTE: since 2019 DGVa doesn't accept submissions. Please send the data for submission to European Variation Archive (EVA). | genome, dna, gene, expression, genetics, mapping, structural, variant, gold standard |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is related to: dbVar is related to: ISCA Consortium is related to: Database of Genomic Variants is related to: Ensembl Variation has parent organization: European Bioinformatics Institute |
PMID:23193291 PMID:24174537 |
Free, Freely available | nlx_86626, r3d100010814 | https://doi.org/10.17616/R3HK7Z | http://www.ebi.ac.uk/dgva/page.php, http://www.ebi.ac.uk/dgva/ | SCR_004896 | , DGVarchive, DGVa, Database of Genomic Variants Archive | 2026-09-19 12:50:44 | 211 | ||||
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SMD Resource Report Resource Website 10+ mentions |
SMD (RRID:SCR_004987) | SMD | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on December 17, 2021. Database to store, annotate, view, analyze and share microarray data. It provides registered users access to their own data, provides users access to public data, and tools with which to analyze those data, to any public user anywhere in the world. The GenePattern software package has been incorporated directly into SMD, providing access to many new analysis tools, as well as a plug-in architecture that allows users to directly integrate and share additional tools through SMD. This extension is available with the SMD source code that is fully and freely available to others under an Open Source license, enabling other groups to create a local installation of SMD with an enriched data analysis capability. SMD search options allow the user to Search By Experiments, Search By Datasets, or Search By Gene Names. Web services are provided using common standards, such as Simple Object Access Protocol (SOAP). This enables both local and remote researchers to connect to an installation of the database and retrieve data using pre-defined methods, without needing to resort to use of a web browser. | data set, microarray, gene, image, gene expression, adenovirus disease, apoptosis, leukemia, source code, web service |
is listed by: 3DVC is listed by: re3data.org is listed by: OMICtools is related to: Longhorn Array Database is related to: Tuberculosis Database has parent organization: Princeton University; New Jersey; USA is parent organization of: SOURCE |
NCI ; Howard Hughes Medical Institute ; Stanford University School of Medicine; California; USA ; NHGRI R01 HG003469 |
PMID:18953035 PMID:17182626 PMID:15608265 PMID:12519956 PMID:11125075 |
Public, Open-source license, The community can contribute to this resource, Acknowledgement requested, THIS RESOURCE IS NO LONGER IN SERVICE | nlx_94141, OMICS_00870, r3d100010555 | https://doi.org/10.17616/R3DW40 | http://genome-www.stanford.edu/microarray/, http://smd.stanford.edu/ | SCR_004987 | Stanford Microarray Database | 2026-09-19 12:50:45 | 12 | |||
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ACADIS Gateway Resource Report Resource Website |
ACADIS Gateway (RRID:SCR_010473) | ACADIS Gateway | data or information resource, data repository, database, service resource, storage service resource | A repository and data management services for Arctic research data. Data include long-term observational timeseries, local, regional, and system-scale research from many diverse domains. | arctic region, permafrost, oceanography, cryosphere, sea ice, arctic people, atmosphere, remote sensing, biogeochemistry, glacier, physical sciences, arctic, agriculture, atmosphere, biological classification, biosphere, climate indicator, cryosphere, human dimension, land surface, ocean, paleoclimate, solid earth, terrestrial hydrosphere |
is listed by: re3data.org has parent organization: National Snow and Ice Data Center |
NSF | nlx_157746, r3d100010964 | SCR_010473 | ACADIS Gateway - An Arctic Data Repository, Advanced Cooperative Arctic Data and Information Service (ACADIS) Gateway, Advanced Cooperative Arctic Data and Information Service Gateway | 2026-09-19 12:51:56 | 0 | |||||||
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Neuroscience Information Framework Resource Report Resource Website 100+ mentions |
Neuroscience Information Framework (RRID:SCR_002894) | NIF | data or information resource, data repository, database, portal, service resource, software application, software development tool, software resource, storage service resource, systems interoperability software | Framework for identifying, locating, relating, accessing, integrating, and analyzing information from neuroscience research. Users can search for and add neuroscience-related resources at NIF portal and receive and RRID to track and cite resources within scientific manuscripts. | neuroscience, bioinformatics, data sharing, metadata standard, ontology, resource, registry, literature, grant, service, software, neuinfo, cerebral circulation, neuron, antibody diversity, neuroanatomy, atlas, bio.tools, bio.tools |
uses: UBERON recommends: Resource Identification Portal is recommended by: National Library of Medicine is listed by: FORCE11 is listed by: OMICtools is listed by: re3data.org is listed by: National Institute of Mental Health is listed by: Debian is listed by: bio.tools is related to: NIDDK Information Network (dkNET) is related to: SciCrunch is related to: SenseLab is related to: Linked Neuron Data is related to: Whole Brain Catalog is related to: FAIR Data Informatics Laboratory is related to: Atlas Ontology Model has parent organization: University of California at San Diego; California; USA is parent organization of: ModelRun is parent organization of: NIF Web Services is parent organization of: NIF Blog is parent organization of: Integrated is parent organization of: Drug Related Gene Database is parent organization of: DISCO is parent organization of: NIF Data Federation is parent organization of: BioMarkers for SMA Data Portal is parent organization of: SciCrunch Registry is parent organization of: NIF Literature is parent organization of: NeuroLex is parent organization of: NIFSTD is parent organization of: Antibody Registry is parent organization of: ConceptMapper is parent organization of: NIF Dysfunction Ontlogy is parent organization of: NIF Subcellular Ontology is parent organization of: OntoQuest is parent organization of: One Mind Biospecimen Bank Listing is parent organization of: ResearchCrossroads is parent organization of: Neuroscience Gateway is parent organization of: NIF Registry Automated Crawl Data |
NIDA HHSN27120080035C; NIH Blueprint for Neuroscience Research |
PMID:18946742 PMID:22434839 |
Free, Freely available | nif-0000-25673, OMICS_01190, biotools:neuroscinfframework, r3d100010106 | https://www.force11.org/node/4695, https://bio.tools/neuroscinfframework, https://bio.tools/neuroscinfframework, https://doi.org/10.17616/R31P4H | SCR_002894 | neuinfo, NIF, neuinfo.org | 2026-09-19 12:50:07 | 129 | ||||
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Gramene Resource Report Resource Website 500+ mentions |
Gramene (RRID:SCR_002829) | GR | data or information resource, database | Curated, open-source, integrated data resource for comparative functional genomics in crops and model plant species to facilitate the study of cross-species comparisons using information generated from projects supported by public funds. It currently hosts annotated whole genomes in over two dozen plant species and partial assemblies for almost a dozen wild rice species in the Ensembl browser, genetic and physical maps with genes, ESTs and QTLs locations, genetic diversity data sets, structure-function analysis of proteins, plant pathways databases (BioCyc and Plant Reactome platforms), and descriptions of phenotypic traits and mutations. The web-based displays for phenotypes include the Genes and Quantitative Trait Loci (QTL) modules. Sequence based relationships are displayed in the Genomes module using the genome browser adapted from Ensembl, in the Maps module using the comparative map viewer (CMap) from GMOD, and in the Proteins module displays. BLAST is used to search for similar sequences. Literature supporting all the above data is organized in the Literature database. In addition, Gramene now hosts a variety of web services including a Distributed Annotation Server (DAS), BLAST and a public MySQL database. Twice a year, Gramene releases a major build of the database and makes interim releases to correct errors or to make important updates to software and/or data. Additionally you can access Gramene through an FTP site. | crop, plant genome, genetic, blast, gene, genome, genetic diversity, pathway, protein, marker, quantitative trait locus, comparative map, phenotype, genomics, physiology, comparative, grain, expressed sequence tag, trait, mutation, environment, taxonomy, web service, bio.tools, FASEB list |
is used by: NIF Data Federation is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: AmiGO is related to: Gene Ontology is related to: Plant Ontology is related to: Trait Ontology is related to: EnvO is related to: BioCyc has parent organization: Cold Spring Harbor Laboratory has parent organization: Cornell University; New York; USA is parent organization of: Trait Ontology is parent organization of: Plant Environmental Conditions is parent organization of: Plant Trait Ontology is parent organization of: Cereal Plant Development Ontology is parent organization of: Cereal Plant Gross Anatomy Ontology |
USDA IFAFS 00-52100-9622; USDA 58-1907-0-041; USDA 1907-21000-030; NSF 0321685; NSF 0703908; NSF 0851652 |
PMID:21076153 PMID:17984077 PMID:16381966 |
Free, Freely available | r3d100010856, nif-0000-02926, nlx_65829, biotools:gramene | https://bio.tools/gramene, https://doi.org/10.17616/R3GG7M | SCR_002829 | GR PROTEIN, RiceGenes, GR REF, GR GENE, Gramene: A Resource for Comparative Grass Genomics, GR QTL | 2026-09-19 12:50:06 | 863 | ||||
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HGNC Resource Report Resource Website 1000+ mentions |
HGNC (RRID:SCR_002827) | controlled vocabulary, data or information resource, database | Only worldwide authority that provides standardized nomenclature, i.e. gene names and symbols (short form abbreviations), for all known human genes, and stores all approved symbols in the HGNC database. Approved human gene nomenclature. Database of gene symbols and names. Manually curated genes into groups based on shared characteristics such as homology, function or phenotype. Data for protein-coding genes, pseudogenes and non-coding RNAs. | gene, owl, gene symbol, phenotype, nomenclature, gene family, gene groups, genomic, proteomic, ortholog, web service, locus, protein coding, genetics, gold standard, bio.tools, FASEB list, GCBR, ELIXIR Core Data Resource, DRKB |
is used by: Nowomics is used by: Cytokine Registry is listed by: BioPortal is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Rat Gene Symbol Tracker is related to: INFEVERS is related to: VGNC has parent organization: University of Cambridge School of Clinical Medicine; Cambridge; United Kingdom |
NHGRI U24HG003345 | PMID:36243972 PMID:32747822 PMID:34615987 PMID:33152070 |
Free, Freely available | biotools:genenames.org, nif-0000-02955, r3d100010901 | http://bioportal.bioontology.org/ontologies/HUGO, https://bio.tools/genenames.org, https://doi.org/10.17616/R3XC80 | SCR_002827 | HUGO symbols, HGNC Database, HGNC - HUGO Gene Nomenclature Committee, HUGO Gene Nomenclature Committee, Human Genome Organization Gene Symbols | 2026-09-19 12:50:06 | 1134 |
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