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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Onto-Express To Go (OE2GO)
 
Resource Report
Resource Website
Onto-Express To Go (OE2GO) (RRID:SCR_008854) OE2GO production service resource, software resource, data analysis service, software application, text-mining software, analysis service resource, service resource Onto-Express is a web-based tool in the Onto-Tools suite that performs automated function profiling for a list of differentially expressed genes. However, Onto-Express does not support functional profiling for the organisms that do not have annotations in public domain, or use of custom (i.e. user-defined) ontologies. This limitation is also true for most of the other existing tools for functional profiling, which means that researchers working with uncommon organisms and/or new annotations or ontologies may be forced to construct such profiles manually. Onto-Express To Go (OE2GO) is a new tool added to the Onto-Tools ensemble to address these issues. OE2GO is built on top of OE to leverage its existing functionality. In OE2GO, the users now have an option to use either the Onto-Tools database as a source of functional annotations or provide their own annotations in a separate file. Currently, OE2GO supports annotation file in the Gene Ontology format. Platform: Online tool, Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible gene, gene expression, annotation, data mining, ontology browser, annotation browser, ontology search engine, annotation search engine, ontology visualization, annotation visualization, statistical analysis, term enrichment, browser, visualization, search engine is listed by: Gene Ontology Tools
is related to: Gene Ontology
has parent organization: Wayne State University; Michigan; USA
PMID:17584796 Free for academic use nlx_149112 SCR_008854 Onto-Express-to-go, Onto-Express To Go 2026-08-08 11:59:21 0
Tissue Access for Patient Benefit
 
Resource Report
Resource Website
Tissue Access for Patient Benefit (RRID:SCR_008853) TAPb, TAPB data or information resource, portal, topical portal We aim to facilitate the pathway for access, storage, use and transfer of human organs, cells and tissue between clinical centers within UCL Partners, academic groups in UCL, other universities, hospitals, medical researcher and biotechnology companies, to enhance the ability for researchers to access the materials they need. Alongside this, researchers will be able to exchange information and access guides on regulatory, ethics and practical issues concerning access, transfer and use of this type of material. These guides will be video and documents format, based on talks at organized events given by experts in the relevant fields. All of this information will be accessible on a website that seeks to link groups within UCL and attract attention from the wider world through social media and expansion of existing contacts. Our vision is to develop a centralized human tissue provision and utilization service for academic and commercial researchers UCL has the highest concentration of biomedical researchers in Europe. As part of this, UCL has numerous licensed biobanks and is associated with many research intensive hospitals in North London. The role of a biobank is to prepare and hold human tissue samples in for use by medical researchers to help delivery new treatments. Hospitals can also provide human tissue for research by utilizing waste human tissue taken as part of surgery or diagnostic procedures, but is normally incinerated. The researchers using the human tissue could be working within academic laboratories in UK universities and institutions or as part of commercial companies. Researchers currently cannot easily access human tissue to meet the demands of their research, often due to the long ethical, regulatory and contractual processes. However, with the enormous UCL biobanking and research Hospital resources, UCL could be a leading academic institution in providing human tissue for medical research within the UK and internationally. Our vision is to develop a centralized human tissue provision and utilization service for academic and commercial researchers. This relies on creating an overarching infrastructure, to consolidate information on disparate human tissue resources around UCL, and (where possible) gain centralized ethical and regulatory and contractual approval for use of the tissue. Funding the infrastructure will rely on a cost recovery model for a per sample basis. As a result the time needed to obtain tissue for research will be dramatically reduced, whilst providing a simple costing model for obtaining human tissue. This will make human tissue procurement much more efficient for end users. has parent organization: University College London; London; United Kingdom nlx_149096 SCR_008853 UCL - Tissue Access for Patient Benefit 2026-08-08 11:59:16 0
OME - Open Microscopy Environment
 
Resource Report
Resource Website
1+ mentions
OME - Open Microscopy Environment (RRID:SCR_008849) OME data or information resource, standard specification, narrative resource, software resource, source code Open tools to support data management for biological light microscopy produced by a multi-site collaborative effort among academic laboratories and a number of commercial entities. Designed to interact with existing commercial software, all OME formats and software are free, and all OME source code is available under the GNU General public license or through commercial license from Glencoe Software. OME is developed as a joint project between research-active laboratories at the Dundee, NIA Baltimore, and Harvard Medical School and LOCI. In addition, OME has active collaborations with many imaging and informatics groups. While many other applications could use OME''s architecture and design, their specific implementation is focused on biological and biomedical imaging. Those interested in applying OME''s technology to other applications should contact the developers. OME work is divided into several different standards and software projects: * Bio-Formats: A Java-based library for reading and writing over 90 microscopy file formats. * OMERO Software: The Java-based OMERO software project, which currently includes tools for storing, visualizing, managing, and annotating microscopic images and metadata. * OME-XML & OME-TIFF: The OME-XML and OME-TIFF file format specifications, which are open file formats for sharing microscope image data. * OME Server: This was the original OME server project which has now ended and is a legacy product. It implements image-based analysis of cellular dynamics and image-based screening of cellular localization or phenotypes, and included a fully developed version of the 2003 version of OME-XML Schema language. light microscopy, imaging, biomedical imaging, image, microscope, biomedical has parent organization: University of Dundee; Scotland; United Kingdom
is parent organization of: Bio-Formats
is parent organization of: OMERO
is parent organization of: OME-TIFF Format
Aging PMID:15892875
PMID:20513764
GNU General Public License, Commercial license, (Glencoe Software) nlx_146268 SCR_008849 Open Microscopy Environment 2026-08-08 11:59:16 8
DFBIdb
 
Resource Report
Resource Website
DFBIdb (RRID:SCR_009456) DFBIdb data management software, software resource, software application A suite of tools for efficient management of neuroimaging project data. Specifically, DFBIdb was designed to allow users to quickly perform routine management tasks of sorting, archiving, exploring, exporting and organising raw data. DFBIdb was implemented as a collection of Python scripts that maintain a project-based, centralised database that is based on the XCEDE 2 data model. Project data is imported from a filesystem hierarchy of raw files, which is an often-used convention of imaging devices, using a single script that catalogues meta-data into a modified XCEDE 2 data model. During the import process data are reversibly anonymised, archived and compressed. The import script was designed to support multiple file formats and features an extensible framework that can be adapted to novel file formats. Graphical user interfaces are provided for data exploration. DFBIdb includes facilities to export, convert and organise customisable subsets of project data according to user-specified criteria. magnetic resonance, neuroimaging, python, data management software, project management is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) PMID:20838938 GNU General Public License nlx_155602 SCR_009456 2026-08-08 11:59:24 0
DIAMOND
 
Resource Report
Resource Website
1000+ mentions
DIAMOND (RRID:SCR_009457) DIAMOND software resource Software to: view dicom files and assemble them into 3D volumes. View and convert between Analyze, Nifti, and Interfile. Classify and organize dicoms and 3D volumes using metadata. Search and report on a collection of scans. reusable library, analyze, database application, dicom, format conversion, image display, image reconstruction, magnetic resonance, nifti, python, software, visualization, workflow, FASEB list is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of California at Davis; California; USA
nlx_155603 SCR_009457 UC Davis IDeA Lab Applications for Management Of Neuroimaging Data 2026-08-08 11:59:12 4156
GMA
 
Resource Report
Resource Website
GMA (RRID:SCR_009212) GMA software resource, software application, data analysis software, time-series analysis software, data processing software Software package to perform Granger mediation analysis for time series. Includes single level GMA model and two-level GMA model, for time series with hierarchically nested structure. Granger, meditation, analysis, time, series, level, GMA, model, BRAIN Initiative, bio.tools is recommended by: BRAIN Initiative
is listed by: Genetic Analysis Software
is listed by: Debian
is listed by: bio.tools
NIBIB EB022911 PMID:31070732 Free, Available for download, Freely available nlx_154361, biotools:GMA https://github.com/chaoning/GMA, https://bio.tools/GMA http://www.montana.edu/kalinowski/GMA/GMA_Home.htm SCR_009212 Granger Mediation Analysis 2026-08-08 11:59:23 0
CBS High-Res Brain Processing Tools
 
Resource Report
Resource Website
10+ mentions
CBS High-Res Brain Processing Tools (RRID:SCR_009452) CBS High-Res Brain Processing Tools software resource A fully automated processing pipeline for cortical analysis of structural MR images at a resolution of up to 400������m, including skull stripping, whole brain segmentation, cortical extraction, surface inflation and mapping, as well as dedicated tools for profile estimation across the cortical thickness. The tools are released as a set of plug-ins for the MIPAV software package and the JIST pipeline environment. They are therefore cross-platform and compatible with a wide variety of file formats. magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: JIST: Java Image Science Toolkit
is related to: MIPAV: Medical Image Processing and Visualization
Free nlx_155596 SCR_009452 2026-08-08 11:59:24 20
CCSeg - Corpus Callosum Segmentation
 
Resource Report
Resource Website
1+ mentions
CCSeg - Corpus Callosum Segmentation (RRID:SCR_009453) CCSeg segmentation software, image analysis software, software resource, software application, data processing software An open-source C++-based application that allows automatic as well as user-interactive segmentation of the Corpus Callosum. Via a Qt-based graphical user interface, CCSeg also performs semi-automatic segmentation. c++, magnetic resonance, segmentation, shape analysis, corpus callosum is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA
PMID:9873919 BSD License nlx_155597 SCR_009453 Corpus Callosum Segmentation Tool 2026-08-08 11:59:12 1
CreZoo
 
Resource Report
Resource Website
1+ mentions
CreZoo (RRID:SCR_008919) CreZoo biomaterial supply resource, material resource, organism supplier Database of helpful set of CreERT2 driver lines expressing in various regions of the developing and adult zebrafish. The lines have been generated via the insertion of a mCherry-T2A-CreERT2 in a gene trap approach or by using promoter fragments driving CreERT2. You can search the list of all transgenic lines or single entries by insertions (gene) or expression patterns (anatomy/region). In most cases the CreERT2 expression profile using in situ hybridization at 24 hpf and 48 hpf is shown, but also additional information (e.g. mCherry or CreERT2 expression at adult stages, transactivation of a Cre-dependent reporter line) is displayed. Currently, not all insertions have been mapped to a genomic location but the database will be regularly updated adding newly generated insertions and mapping information. Your help in improving and broadening the database by giving your opinion or knowledge of expression patterns is highly appreciated. cre, transgenic line, gene, cre line, expression pattern, expression profile, blood, blood progenitor, brain, neural tube, ear, eye, fin, heart, kidney, notochord, olfactory system, regenerating fin, somite, tailbud, ubiquitous, urogenital opening, adult zebrafish, creert2 insertion, creert2, development, developing zebrafish. image is listed by: One Mind Biospecimen Bank Listing
has parent organization: Dresden University of Technology; Saxony; Germany
DFG BR 1746/3-1 nlx_151615 SCR_008919 zebrafish CreZoo, CreZoo Database 2026-08-08 11:59:22 1
TopFIND
 
Resource Report
Resource Website
10+ mentions
TopFIND (RRID:SCR_008918) TopFIND data or information resource, database, service resource, storage service resource, data repository An integrated knowledgebase focused on protein termini, their formation by proteases and functional implications. It contains information about the processing and the processing state of proteins and functional implications thereof derived from research literature, contributions by the scientific community and biological databases. It lists more than 120,000 N- and C-termini and almost 10,000 cleavages. TopFIND is a resource for comprehensive coverage of protein N- and C-termini discovered by all available in silico, in vitro as well as in vivo methodologies. It makes use of existing knowledge by seamless integration of data from UniProt and MEROPS and provides access to new data from community submission and manual literature curating. It renders modifications of protein termini, such as acetylation and citrulination, easily accessible and searchable and provides the means to identify and analyse extend and distribution of terminal modifications across a protein. The data is presented to the user with a strong emphasis on the relation to curated background information and underlying evidence that led to the observation of a terminus, its modification or proteolytic cleavage. In brief the protein information, its domain structure, protein termini, terminus modifications and proteolytic processing of and by other proteins is listed. All information is accompanied by metadata like its original source, method of identification, confidence measurement or related publication. A positional cross correlation evaluation matches termini and cleavage sites with protein features (such as amino acid variants) and domains to highlight potential effects and dependencies in a unique way. Also, a network view of all proteins showing their functional dependency as protease, substrate or protease inhibitor tied in with protein interactions is provided for the easy evaluation of network wide effects. A powerful yet user friendly filtering mechanism allows the presented data to be filtered based on parameters like methodology used, in vivo relevance, confidence or data source (e.g. limited to a single laboratory or publication). This provides means to assess physiological relevant data and to deduce functional information and hypotheses relevant to the bench scientist. TopFIND PROVIDES: * Integration of protein termini with proteolytic processing and protein features * Displays proteases and substrates within their protease web including detailed evidence information * Fully supports the Human Proteome Project through search by chromosome location CONTRIBUTE * Submit your N- or C-termini datasets * Contribute information on protein cleavages * Provide detailed experimental description, sample information and raw data protein, n-termini, c-termini, protease, protein cleavage, proteomics, cleavage site, terminus, modification, proteolytic processing, protein function, domain structure, protein termini, terminus modification, protease, substrate, protease inhibitor, protein interaction, protein-protein interaction, interaction, bio.tools is listed by: bio.tools
is listed by: Debian
is related to: UniProtKB
is related to: PSICQUIC Registry
is related to: MEROPS
has parent organization: University of British Columbia; British Columbia; Canada
Canadian Institutes of Health Research ;
Cancer Research Society ;
British Columbia Proteomics Network ;
Metalloproteinase Proteomics and Systems Biology ;
Michael Smith Foundation for Health Research ;
Breast Cancer Society of Canada ;
Alexander von Humboldt-Stiftung ;
BMBF ;
German Academic Exchange Service
PMID:22102574
PMID:21822272
Public, Acknowledgement requested biotools:topfind, r3d100012721, nlx_151607 https://bio.tools/topfind, https://doi.org/10.17616/R3KB8J, https://doi.org/10.17616/R3KB8J SCR_008918 Termini oriented protein Function Inferred Database 2026-08-08 11:59:17 29
FGDP
 
Resource Report
Resource Website
FGDP (RRID:SCR_008910) FGDP software resource A Java-based, Microarray or Genechip data analysis system. bio.tools is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
has parent organization: Fox Chase Cancer Center
PMID:14734324 GNU General Public License OMICS_00756, biotools:fgdp https://bio.tools/fgdp SCR_008910 Functional Genomics Data Pipeline (FGDP), Functional Genomics Data Pipeline 2026-08-08 11:59:17 0
elk-reasoner
 
Resource Report
Resource Website
elk-reasoner (RRID:SCR_008913) ELK software resource ELK is an ontology reasoner with the goal of supporting the OWL 2 EL profile. ELK is a specialized reasoner for the lightweight ontology language OWL EL. The practical utility of ELK is in its combination of high performance and comprehensive support for language features. At its core, ELK employs a consequence-based reasoning engine that can take advantage of multi-core and multi-processor systems. A modular architecture allows ELK to be used as a stand-alone application, Protege plug-in, or programming library (either with or without the OWL API). owl ontology reasoning el, owl, ontology, semantic web, reasoner, description logic, reasoner, ontology reasoner, owl el is listed by: Gene Ontology Tools
has parent organization: University of Oxford; Oxford; United Kingdom
has parent organization: Ulm University; Baden-Wurttemberg; Germany
EPSRC EP/G02085X/1 Open unspecified license, Apache License v2 nlx_151493 SCR_008913 ELK Reasoner 2026-08-08 11:59:10 0
PDBj - Protein Data Bank Japan
 
Resource Report
Resource Website
10+ mentions
PDBj - Protein Data Bank Japan (RRID:SCR_008912) PDBj data or information resource, database, service resource, storage service resource, data repository PDBj (Protein Data Bank Japan) maintains a centralized PDB archive of macromolecular structures and provides integrated tools, in collaboration with the RCSB, the BMRB in USA and the PDBe in EU. protein, macromolecule, structure, sequence, ligand, binding site, nmr, molecule, gold standard is recommended by: NIDDK Information Network (dkNET)
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: Worldwide Protein Data Bank (wwPDB)
is related to: PDBe - Protein Data Bank in Europe
is related to: Biological Magnetic Resonance Data Bank (BMRB)
is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
has parent organization: Osaka University; Osaka; Japan
Japan Science and Technology Agency ;
NBDC - National Bioscience Database Center
PDB data, Text and images are free of all copyright restrictions. You can use them free of charge. When you reprint or cite them, Please also cite us as follows: Protein Data Bank Japan (PDBj) Please also see Terms of Use page. nlx_151484, r3d100010910 https://doi.org/10.17616/R3RP75, https://doi.org/10.17616/R3RP75 SCR_008912 PDBj, Protein Data Bank Japan 2026-08-08 11:59:22 46
BrainSolution
 
Resource Report
Resource Website
BrainSolution (RRID:SCR_009447) BrainSolution segmentation software, image analysis software, software resource, software application, data processing software A collection of tools for MRI T1 brain image segmentation in the Windows environment. It helps construct a complete pipeline with necessary preprocessing and postprocessing procedures besides brainparser, the core program of our fast brain segmentation. The execution of the whole pipeline can be completed in 2 hours with good segmentation results. Execution requires: FSL analyze, c++, console (text based), labeling, linux, microsoft, magnetic resonance, posix/unix-like, region of interest, segmentation, sh/bash, unix shell, windows, windows nt/2000, windows vista, workflow is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Laboratory of Neuro Imaging
LONI Software License nlx_155591 SCR_009447 2026-08-08 11:59:12 0
National Mouse Metabolic Phenotyping Centers
 
Resource Report
Resource Website
500+ mentions
National Mouse Metabolic Phenotyping Centers (RRID:SCR_008997) MMPC, NIDDKMMPC database, data or information resource, service resource Center mission is to advance medical and biological research by providing the scientific community with standardized, high quality metabolic and physiologic phenotyping services for mouse models of diabetes, diabetic complications, obesity and related disorders. phenotype, phenotyping, metabolism, cardiovascular, gastrointestinal, endocrine, energy, analytic, blood composition, in vivo, hormone, energy balance, eating, exercise, organ function, morphology, physiology, histology, experimental protocol, assay, strain, measurement, animal husbandry, FASEB list is used by: NIF Data Federation
is used by: NIDDK Information Network (dkNET)
is used by: Hypothesis Center
is listed by: NIDDK Information Network (dkNET)
is listed by: NIDDK Research Resources
is related to: dkCOIN
has parent organization: Augusta University; Georgia; USA
has parent organization: Case Western Reserve University; Ohio; USA
has parent organization: University of Cincinnati; Ohio; USA
has parent organization: Vanderbilt University School of Medicine; Tennessee; USA
has parent organization: University of California at Davis; California; USA
has parent organization: University of Massachusetts Medical School; Massachusetts; USA
has parent organization: Yale School of Medicine; Connecticut; USA
is parent organization of: MMPC-Vanderbilt University School of Medicine Animal Health and Welfare Core
is parent organization of: MMPC-Vanderbilt University School of Medicine Analytical Resources Core
is parent organization of: MMPC-University of Michigan Medical School Microbiome Core
is parent organization of: MMPC-Vanderbilt University School of Medicine Metabolic Regulation Core
is parent organization of: MMPC-University of Michigan Medical School Microvascular Complications Core
is parent organization of: MMPC-University of Massachusetts Medical School Cardiovascular Core
is parent organization of: MMPC-Vanderbilt University School of Medicine
is parent organization of: MMPC-University of Michigan Medical School
is parent organization of: MMPC-University of Massachusetts Medical School Humanized Mouse Cell Transplantation and Assessment Core
is parent organization of: MMPC-University of Cincinnati Medical Center Energy Metabolism Food Intake and Body Weight Regulation Core
is parent organization of: MMPC-University of Massachusetts Medical School Islet Core
is parent organization of: MMPC-University of Massachusetts Medical School Metabolism Core
is parent organization of: MMPC-University of Massachusetts Medical School Animal Care Core
is parent organization of: MMPC-University of Cincinnati Medical Center
is parent organization of: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility
is parent organization of: MMPC-University of Massachusetts Medical School Analytical Core
is parent organization of: MMPC-University of California Davis Energy Balance Exercise and Behavior Core
is parent organization of: MMPC-University of Cincinnati Medical Center Lipid Lipoprotein and Glucose Metabolism Core
is parent organization of: MMPC-University of California Davis Administrative Core
is parent organization of: MMPC-University of California Davis Microbiome and Host Response Core
is parent organization of: MMPC-University of Cincinnati Medical Center Cardiovascular and Renal Function Core
is parent organization of: MMPC-University of California Davis Endocrinology and Metabolism Core
is parent organization of: MMPC-University of California Davis
is parent organization of: MMPC-University of California Davis Animal Care Surgery and Pathology Core
is parent organization of: MMPC-University of Michigan Medical School Metabolism Bariatric Surgery and Behavior Core
is parent organization of: MMPC-Vanderbilt University School of Medicine Cardiovascular Pathophysiology Core
is parent organization of: MMPC-University of Michigan Medical School Animal Care and Germ-Free Mouse Core
has organization facet: MMPC-University of California Davis
has organization facet: MMPC-University of Cincinnati Medical Center
has organization facet: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility
has organization facet: MMPC-University of Michigan Medical School
has organization facet: MMPC-Vanderbilt University School of Medicine
Diabetes, Obesity, Diabetic complication, Metabolic disease, Cardiovascular disease, Nephropathy, Neuropathy, Retinopathy NIDDK U24 DK076174;
NIDDK U24 DK092993;
NIDDK U24 DK059630;
NIDDK U24 DK093000;
NIDDK U24 DK059637;
NIDDK U24 DK059635
Freely available, SCR_015358, nlx_152633 SCR_008997 Mouse Metabolic Phenotyping Centers 2026-08-08 11:59:19 725
Established Populations for Epidemiologic Studies of the Elderly
 
Resource Report
Resource Website
Established Populations for Epidemiologic Studies of the Elderly (RRID:SCR_008909) data or information resource, portal, topical portal A collection of data that describes and identifies predictors of mortality, hospitalization, and placement in long-term care facilities and investigates risk factors for chronic diseases and loss of functioning. The EPESE project consisted of baseline and annual follow-up surveys on approximately 14,000 noninstitutionalized persons aged 65 and older in four geographically-defined communities: East Boston, Massachusetts; Iowa and Washington counties, Iowa; New Haven, Connecticut (started in 1982-1983); and a five-county-wide region in north-central North Carolina (started in 1986). Half of the participants in the North Carolina EPESE are African-American. The baseline data cover demographic characteristics (age, sex, race, height, weight, income, education, marital status, number of children, employment, and religion); social and physical functioning; chronic conditions; related health problems; health habits; self-reported use of dental, hospital, and nursing home services. More detailed descriptions of the Iowa and North Carolina surveys follow in this document (Iowa 65+ Rural Health Study and PHSE Ten-Year Follow-up of North Carolina EPESE). Data Availability: Data from the baseline and the first 6 years of follow-up are available as ICPSR Study No. 9915. Information from death certificates obtained for deaths occurring in the first 6 years of follow-up is also available. * Dates of Study: 1981-1993 * Study Features: Longitudinal, Minority Oversamples, Anthropometric Measures * Sample Size: ** 1981: 14,458 (Baseline) ** 1982: 14,070 (First follow-up) ** 1983: 13,382 (Second follow-up) ** 1984: 12,381 (Third follow-up) ** 1985: 11,657 (Fourth follow-up) ** 1986: 10,998 (Fifth follow-up) ** 1987: 9,998 (Sixth follow-up) Link * ICPSR: http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/09915 is listed by: Inter-university Consortium for Political and Social Research (ICPSR)
is related to: Piedmont Health Survey of the Elderly
is related to: Longitudinal Study of Elderly Mexican American Health
has parent organization: National Archive of Computerized Data on Aging (NACDA)
is parent organization of: Iowa 65+ Rural Health Study
nlx_151825 SCR_008909 2026-08-08 11:59:10 0
Biomatik
 
Resource Report
Resource Website
500+ mentions
Biomatik (RRID:SCR_008944) Biomatik commercial organization An Antibody supplier, Core facility is listed by: ScienceExchange nlx_152303, SciEx_8952 SCR_008944 2026-08-08 11:59:22 871
Beckman Coulter
 
Resource Report
Resource Website
100+ mentions
Beckman Coulter (RRID:SCR_008940) commercial organization An Organization portal, Material service resource, Antibody supplier, Instrument supplier biotechnology, diagnostic, life science, biomedical, testing, analyzer, immunochemistry, dna analysis, flow cytometer is related to: ONE Study
is parent organization of: Diagnostic Systems Laboratories
nlx_152293 SCR_008940 Beckman Coulter Inc. 2026-08-08 11:59:18 160
Fluid Registration and Atlas Toolkit
 
Resource Report
Resource Website
Fluid Registration and Atlas Toolkit (RRID:SCR_009478) FRAT registration software, software toolkit, image analysis software, software library, software resource, software application, data processing software THIS RESOURCE IS NO LONGER IN SERVICE, documented on November 05, 2013. It has been superseeded by the CALATK, available here http://www.calatk.org c++ libraries and applications for performing fluid registration based operations on 2D and 3D images. The registration method is based on the large displacement diffeomorphic mapping (LDDM) registration method and implements discretized fluid registration. This registration method is then applied to time series analysis, cross-sectional atlas building, and longitudinal atlas building. The individual tool components are: * LDDM: Fluid registration between two images. * TimeSeries: Time series analysis of longitudinal data for a single subject. * AtlasBuilder: Cross-sectional atlas building for a population of images. * LongitudinalAtlasBuilder: Longitudinal atlas building for a population of subjects, each with a longitudinal data set. * FRATUtils: A collection of utility functions for working with volumes and time series files atlas application, c++, console (text based), image-to-image, linux, magnetic resonance, nonlinear warp, nrrd, posix/unix-like, registration, spatial transformation, warping is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: CalaTK
THIS RESOURCE IS NO LONGER IN SERVICE nlx_155625 SCR_009478 2026-08-08 11:59:20 0
HAP-SAMPLE
 
Resource Report
Resource Website
1+ mentions
HAP-SAMPLE (RRID:SCR_009234) HAP-SAMPLE production service resource, software resource, data analysis service, software application, analysis service resource, service resource Web application for simulating SNP genotypes for case-control and affected-child trio studies by resampling from Phase I/II HapMap SNP data. The user provides a list of SNPs to be genotyped, along with a disease model file that describes causal SNPs and their effect sizes. The simulation tool is appropriate for candidate regions or whole-genome scans. (entry from Genetic Analysis Software) gene, genetic, genomic, web-based is listed by: Genetic Analysis Software nlx_154392 SCR_009234 2026-08-08 11:59:12 4

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