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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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University of California at San Francisco; California; USA Resource Report Resource Website 1+ mentions |
University of California at San Francisco; California; USA (RRID:SCR_010605) | UCSF | university | Public research university in San Francisco, California. Part of University of California system. Dedicated entirely to health sciences. Major center of medical and biological research and teaching. Ranked as one of top universities in biomedical field in USA and around world. | institution, university, health science, medical, biological, teaching, center, biomedical |
is affiliated with: Diabetes Research Centers is related to: NCIRE is related to: ONE Study is related to: Alzheimers Disease Genetics Consortium is related to: Beta Cell Biology Consortium is related to: Clinical and Translational Science Awards Consortium is related to: Diabetic Foot Consortium has parent organization: University of California; California; USA is parent organization of: DOCK is parent organization of: MochiView is parent organization of: Kravitz Dataset 2 is parent organization of: uManager is parent organization of: UCSF Brain Tumor Tissue Bank is parent organization of: CryptoBase is parent organization of: Resource for Biocomputing Visualization and Informatics is parent organization of: Hyperpolarized MRI Technology Resource Center is parent organization of: Sherlock is parent organization of: Center for Imaging of Neurodegenerative Diseases is parent organization of: WikiPathways is parent organization of: International Gene Trap Consortium is parent organization of: Microstructural correlation toolbox is parent organization of: NUTMEG is parent organization of: AltAnalyze - Alternative Splicing Analysis Tool is parent organization of: Integrative Modeling Platform is parent organization of: UCSF Spot is parent organization of: Allelic Variations of The XP Genes is parent organization of: Edinburgh Postnatal Depression Scale is parent organization of: AIDS and Cancer Specimen Resource is parent organization of: UCSF DNA Bank is parent organization of: Babel is parent organization of: UCSF DataShare is parent organization of: Scientific Data Sharing Project is parent organization of: ModBase is parent organization of: UCSF Laboratory for Visual Neuroscience is parent organization of: UCSF AIDS Specimen Bank is parent organization of: Gene Map Annotator and Pathway Profiler is parent organization of: ExPANdS is parent organization of: UCSF Center for AIDS Prevention Studies (CAPS) is parent organization of: HOLLOW is parent organization of: MAPPFinder is parent organization of: iBioSeminars is parent organization of: Bioelectromagnetism Matlab Toolbox is parent organization of: UCSF Brain Tumor Tissue Bank is parent organization of: Krogan Lab Interactome Database is parent organization of: BayGenomics is parent organization of: CanPredict is parent organization of: MODELLER is parent organization of: DeRisi Lab is parent organization of: CTSpedia is parent organization of: Kravitz Dataset1 is parent organization of: UCSF Helen Diller Family Comprehensive Cancer Center is parent organization of: Clinical Research Resource HUB is parent organization of: National Bio-Organic Biomedical Mass Spectrometry Resource Center is parent organization of: Program to Reduce Incontinence by Diet and Exercise is parent organization of: Brain Health Registry is parent organization of: The Li Lab at UCSF is parent organization of: UCSF Nikon Imaging Center is parent organization of: UCSF School of Medicine; California; USA is parent organization of: Microarrays.org is parent organization of: University of California, San Francisco School of Pharmacy is parent organization of: PRICE is parent organization of: HMMSplicer is parent organization of: ArrayOligoSelector is parent organization of: stepNorm is parent organization of: National Center for X-ray Tomography is parent organization of: SURPI is parent organization of: Research Network in Early Experience and Brain Development is parent organization of: Resource for Genetic Epidemiology Research on Adult Health and Aging is parent organization of: PSCBS is parent organization of: Sparky is parent organization of: Cytokine Registry is parent organization of: Protein Prospector is parent organization of: University of California San Francisco Diabetes Research Center Mouse Genetics Core Facility is parent organization of: University of California San Francisco Diabetes Research Center Islet Production Core Facility is parent organization of: University of California San Francisco Parnassus Flow Cytometry Core Facility is parent organization of: University of California San Francisco Diabetes Research Center Lentiviral RNAi Core Facility is parent organization of: University of California San Francisco Diabetes Research Center Microscopy Core Facility is parent organization of: University of California San Francisco Diabetes Research Center is parent organization of: University of California San Francisco Diabetes Research Center Mouse Metabolism Core is parent organization of: University of California San Francisco Nutrition and Obesity Research Center Mouse Metabolism and Imaging Core is parent organization of: University of California San Francisco Nutrition and Obesity Research Center Human Metabolism Core is parent organization of: University of California San Francisco Nutrition and Obesity Research Center Genetics and Genomics Core is parent organization of: University of California San Francisco Nutrition and Obesity Research Center is parent organization of: Cystic Fibrosis Center - University of California San Francisco is parent organization of: UCSF ChimeraX is parent organization of: MotionCor2 is parent organization of: Clonotator is parent organization of: FoXS is parent organization of: covidcounties.org is parent organization of: DoubletFinder is parent organization of: syndRomics is parent organization of: PhotometryBox is parent organization of: University of California at San Francisco Immunology Lab Core Facility is parent organization of: Similarity Ensemble Approach is parent organization of: University of California at San Francisco Advanced Microscopy Core Facility is parent organization of: University of California San Francisco Clinical Cancer Genomics Laboratory Core Facility is parent organization of: UCSF Helen Diller Family Comprehensive Cancer Center Flow and Cell Sorting Core Facility |
nlx_57854, GRID grid.266102.1; ISNI 0000 0001 2297 6811; Crossref Funder ID 100008069; Wikidata Q1061104 | https://ror.org/043mz5j54 | SCR_010605 | UC San Francisco, The University of California, San Francisco, University of California San Francisco, University of California at San Francisco | 2026-08-01 12:04:14 | 9 | |||||||
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Evidence-Based Health Care Search Strategies Resource Report Resource Website |
Evidence-Based Health Care Search Strategies (RRID:SCR_010606) | narrative resource, data or information resource, wiki | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. This wiki focuses on the process, techniques and tools of high quality searching in the context of evidence-based health care. Information collected in the wiki is primarily intended for medical librarians, but may be of interest to others. Please keep in mind that search strategies and tools here are intended for use by trained professionals in the course of their professional duties, and are not intended for use by the general public. If they are helpful or useful to others that is a plus, but not the primary purpose of the site. | ebhc, ebm, evidence-based, health, healthcare, medicine, medline, pubmed searching | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_51340 | SCR_010606 | EBHC Search Strategies Wiki, EBHC Search Strategies | 2026-08-01 12:04:16 | 0 | |||||||||
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vipR Resource Report Resource Website 50+ mentions |
vipR (RRID:SCR_010685) | vipR | software resource | A software program to screen for sequence variants (SNPs, deletions) in sequence data generated by high-throughput-sequencing platforms. |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_00081 | SCR_010685 | 2026-08-01 12:04:16 | 58 | ||||||||||
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MaSuRCA Resource Report Resource Website 100+ mentions |
MaSuRCA (RRID:SCR_010691) | MaSuRCA | software resource | A whole genome assembly software that combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: University of Maryland; Maryland; USA |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00020, biotools:masurca | https://bio.tools/masurca | SCR_010691 | 2026-08-01 12:03:55 | 463 | |||||||
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Life Extension Foundation Resource Report Resource Website |
Life Extension Foundation (RRID:SCR_010574) | institution | Established in 1980, the Life Extension Foundation is a nonprofit organization, whose long-range goal is to radically extend the healthy human lifespan by discovering scientific methods to control aging and eradicate disease. The largest organization of its kind in the world, the Life Extension Foundation has always been at the forefront of discovering new scientific breakthroughs for use in developing novel disease prevention and treatment protocols to improve the quality and length of human life. Through its private funding of research programs aimed at identifying and developing new therapies to slow and even reverse the aging process, the Life Extension Foundation seeks to reduce, and ultimately eliminate, such age-related killers as heart disease, stroke, cancer and Alzheimer''s disease. Long-time members are keenly aware of the scientific research that Life Extension Foundation funds to develop validated methods to slow and reverse the aging process. Less known is Life Extension''s multi-prong program to develop safer and more effective cancer therapies. One reason we focus so heavily on cancer research is that this dreaded disease represents a roadblock in our ability to develop effective means to combat aging. | is parent organization of: Life Extension | Aging | ISNI: 0000 0001 0300 2958, nlx_41735, grid.490868.b | https://ror.org/02vzd2x77 | SCR_010574 | 2026-08-01 12:04:14 | 0 | |||||||||
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Gossamer Resource Report Resource Website 1+ mentions |
Gossamer (RRID:SCR_010612) | Gossamer | software resource | A software application for the de novo assembly of genomes from fragments of DNA that specifically attacks the question of scalability. | is listed by: OMICtools | OMICS_00017 | SCR_010612 | Gossamer: A Space-Efficient Genome Assembler | 2026-08-01 12:04:16 | 1 | |||||||||
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Medical Imaging Resource Report Resource Website 50+ mentions |
Medical Imaging (RRID:SCR_010665) | narrative resource, data or information resource, wiki | A wiki all about medical imaging. Anyone may contribute who registers. Popular pages include Optical Imaging, Imaging brain function with optical topography, Optical mammography, Introduction to optical imaging, Comparison of time domain and frequency domain systems, Forward problem in diffuse optical imaging, Optical molecular imaging. | radiology | nlx_71965 | SCR_010665 | 2026-08-01 12:04:16 | 65 | |||||||||||
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Meraculous Resource Report Resource Website 10+ mentions |
Meraculous (RRID:SCR_010700) | Meraculous | software resource | An algorithm for de novo genome assembly with short paired-end reads. | is listed by: OMICtools | OMICS_00021 | SCR_010700 | Meraculous: De Novo Genome Assembly with Short Paired-End Reads | 2026-08-01 12:03:55 | 39 | |||||||||
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Matrix2png Resource Report Resource Website 100+ mentions |
Matrix2png (RRID:SCR_010669) | software resource | An open visualization tool for the display of matrix data. It is available for download or interactive web use. It is a simple but powerful program for making visualizations of microarray data and many other data types. It generates PNG formatted images from text files of data. It is fast, easy to use, and reasonably flexible. It can be used to generate publication-quality images, or to act as a image generator for web applications. Our group has found it useful for imaging all kinds of matrix-based data, not just microarray data. | dna microarray, matrix | has parent organization: University of British Columbia; British Columbia; Canada | nlx_74565 | SCR_010669 | 2026-08-01 12:04:15 | 126 | ||||||||||
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Barth Syndrome Foundation Resource Report Resource Website 1+ mentions |
Barth Syndrome Foundation (RRID:SCR_010556) | BSF | institution | The Barth Syndrome Foundation, together with our affiliates, is a community of families, physicians, scientists, donors and volunteers around the world. As our mission statement says, we are dedicated to saving lives through education, advances in treatment, and finding a cure for Barth syndrome - a sometimes fatal, oftentimes debilitating genetic disease. Our work includes: * Raising awareness among physicians, scientists, and the general public; * Supporting relevant research through an international grant research program; * Providing a caring and educational community for affected families; and * Hosting a unique information resource. Working together we are making a difference in the lives of children and their families. One day there will be a cure; we hope you will help us make that day come sooner. We are the only world-wide volunteer organization dedicated to saving lives through education, advances in treatment and pursuit of a cure for Barth syndrome (BTHS). We started in 2000, after the first international conference held in Baltimore, MD (USA) where families from around the world met to discuss BTHS. As a result, we made a unanimous decision to work together to find a cure for this multi-system disorder. Our Foundation strives to accelerate progress through collaboration between families and scientists. We encourage family participation in research. Also, we provide several ways to keep up-to-date about advances in science and medicine. Our principal education event is our biennial international scientific, medical and family conference, which brings together the largest number of individuals interested in Barth syndrome. Our Family Services team is continually developing new informational resources in response to the needs of families, individuals, and professionals working with those affected by Barth syndrome. | is parent organization of: Barth Syndrome Biorepository | Crossref funder ID: 100002651, nlx_35906, grid.427791.e | https://ror.org/00p5z3m34 | SCR_010556 | 2026-08-01 12:04:15 | 1 | |||||||||
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AlloSource Resource Report Resource Website 1+ mentions |
AlloSource (RRID:SCR_010683) | AlloSource | nonprofit organization | AlloSource is a non-profit organization founded in 1994 on a promise to honor and respect the gift of donation by responsibly developing, processing and distributing life-saving and life-enhancing allografts for our communities. Today, each of our 300 employees continues to fulfill this promise through multi-shift, 360-day processing to the highest quality and service standards. We strive to be the tissue network patients and the world''s most respected transplant teams ask for by name. This is accomplished by understanding the needs of our doctors and by providing the best tissue for our recipients. We offer more than 200 standard and customized precision allograft products, and act as a trusted and knowledgeable partner to the medical community, all with the intention of maximizing medical impact. In 1995, Allosource evolved from a local tissue bank in Denver, Colorado into a national organization serving communities around the country. Today, AlloSource is one of the largest, most respected tissue banks in the United States. Through our growth we''ve remained committed to the wishes of donor families, the needs of our surgeon customers, and the hopes of our patient recipients. Our promise of doing more with life reflects our unwavering focus on integrity, quality, safety, and respect today, and into the future. | is listed by: One Mind Biospecimen Bank Listing | Crossref funder ID: 100007821, ISNI: 0000 0004 0444 4813, grid.468397.7, nlx_79067 | https://ror.org/04x2e7745 | SCR_010683 | AlloSource | 2026-08-01 12:04:15 | 3 | ||||||||
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Jackson ImmunoResearch Resource Report Resource Website 1000+ mentions |
Jackson ImmunoResearch (RRID:SCR_010488) | commercial organization | A commercial antibody vendor, specializing in secondary antibodies. | nlx_157891 | SCR_010488 | Jackson Immuno Research, Jacksonimmunoresearch | 2026-08-01 12:03:52 | 3966 | |||||||||||
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TraIT Resource Report Resource Website 10+ mentions |
TraIT (RRID:SCR_010493) | software resource | An ambitious project to develop an IT infrastructure for translational research that aims to facilitate the collection, storage, analysis, archiving, sharing and securing of data. | is related to: eTRIKS | nlx_158039 | SCR_010493 | Translational Research IT, TraIT project | 2026-08-01 12:04:14 | 20 | ||||||||||
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ContextMap Resource Report Resource Website 10+ mentions |
ContextMap (RRID:SCR_010496) | ContextMap | software resource | A context-based approach to identify the most likely mapping for RNA-seq experiments. | is listed by: OMICtools | OMICS_01239 | SCR_010496 | 2026-08-01 12:04:14 | 27 | ||||||||||
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Alkermes Resource Report Resource Website |
Alkermes (RRID:SCR_010497) | ALKS | commercial organization | A biopharmaceutical company that focuses on central nervous system (CNS) diseases. The company is the result of a merger between Alkermes, Inc. and Elan Drug Technologies (EDT), the former drug formulation and manufacturing division of Elan Corporation, plc. The company is headquartered in Dublin, and has an R&D center in Waltham, Massachusetts and manufacturing facilities in Athlone, Ireland; Gainesville, Georgia; and Wilmington, Ohio. Alkermes has more than 20 commercial drug products and candidates that address serious and chronic diseases such as addiction, schizophrenia, diabetes and depression. Among these, five products are primary to the company: risperidone Long-Acting Injection (Risperdal Consta) for schizophrenia and bipolar 1 disorder, paliperidone palmitate (Invega Sustenna in the U.S., Xeplion in Europe) for schizophrenia, 4-aminopyridine (Ampyra in the U.S., Fampyra in Europe) to improve walking in patients with multiple sclerosis, naltrexone for extended-release injectable suspension (Vivitrol) for alcohol and opioid dependence, and exenatide extended-release for injectable suspension (Bydureon) for the treatment of type 2 diabetes. Bydureon is a once-weekly, long-acting form of the drug exenatide (Byetta) and was developed through a partnership between Amylin, Alkermes and Eli Lilly. It is approved in Europe and the U.S. (Wikipedia) | central nervous system, disease, biopharmaceutical company, drug | Central nervous system disease, Addiction, Schizophrenia, Diabetes, Depressive Disorder, Bipolar Disorder, Multiple Sclerosis, Alcohol dependence, Opioid dependence, Type 1 diabetes, Type 2 diabetes | ISNI: 0000 0004 0384 2510, nlx_158068, grid.472773.2, Wikidata: Q4727688 | https://ror.org/05sa44m96 | SCR_010497 | Alkermes plc | 2026-08-01 12:04:14 | 0 | |||||||
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CRAC Resource Report Resource Website 10+ mentions |
CRAC (RRID:SCR_010652) | CRAC | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Integrated RNA-Seq read analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. |
is listed by: OMICtools is listed by: Debian |
DOI:10.1186/s12920-016-0178-5 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01240 | https://sources.debian.org/src/crac/ | SCR_010652 | 2026-08-01 12:03:54 | 16 | |||||||
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Creighton University School of Pharmacy and Health Professions Resource Report Resource Website |
Creighton University School of Pharmacy and Health Professions (RRID:SCR_010541) | university | If Occupational Therapy, Pharmacy, or Physical Therapy is not just a career choice for you - if it''s a calling - then you may belong at Creighton University. For our students, it''s about more than career training. It''s about serving patients. Restoring health. Changing lives. Health care is a serious career, perhaps a lifelong calling. Creighton seeks the cream of the crop for these programs - men and women who feel a genuine calling to serve patients, restore health, and save lives. There''s more for you in Omaha than a vibrant university community. It''s true that U.S. News & World Report lists us as among the best colleges in the Midwest. And that we''ve been educating health professionals for more than a century. We''re also home to one of the world''s leading medical communities. That means training in leading edge facilities and in one of the nation''s best teaching hospitals. Perhaps our greatest distinction, however, is our university-wide commitment to creating an ever better and more just world. You''ll find our PT doctoral students staffing a free clinic for the underserved our pharmacy students conducting drug and alcohol education seminars ... and our OT students volunteering for the Special Olympics. It''s all tied to the values we strive toward as a Jesuit institution. | has parent organization: Creighton University; Nebraska; USA | nlx_26778 | http://spahp2.creighton.edu/ | SCR_010541 | SPAHP | 2026-08-01 12:03:53 | 0 | |||||||||
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Community Pilot Funding Opportunity Resource Report Resource Website 10+ mentions |
Community Pilot Funding Opportunity (RRID:SCR_010506) | funding resource |
THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017. Funding opportunities provided by projects or organizations other than government funding opportunities such as those from NIH or NSF. |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_158616 | SCR_010506 | 2026-08-01 12:03:53 | 15 | |||||||||||
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AdipoGen Resource Report Resource Website 1000+ mentions |
AdipoGen (RRID:SCR_010507) | commercial organization | An Antibody supplier, | nlx_158617 | SCR_010507 | 2026-08-01 12:04:14 | 2391 | ||||||||||||
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Dementia-specific FDG PET Template for SPM analyses Resource Report Resource Website |
Dementia-specific FDG PET Template for SPM analyses (RRID:SCR_010465) | software resource | This is a place holder for this tool. The documentation is not yet available (documented 5/30/2014). | pet, resource:spm | is related to: SPM | nlx_157694 | SCR_010465 | Dementia-specific [18F]-FDG-PET Template for SPM analyses | 2026-08-01 12:03:52 | 0 |
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