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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MeGO Resource Report Resource Website |
MeGO (RRID:SCR_000110) | MeGO | ontology, data or information resource, controlled vocabulary | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Gene Ontology dedicated to the functions of mobile genetic elements. The terms defined are used to annotate phage and plasmid protein families in ACLAME. Note: The phage ontology PhiGO has now been incorporated in MeGO and can thus be accessed in MeGO version 1.0 and up. | phage, plasmid, protein family, mobile genetic element, obo |
is listed by: BioPortal is related to: OBO is related to: AmiGO is related to: Gene Ontology has parent organization: A Classification of Mobile genetic Elements |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156939 | SCR_000110 | Mobile Genetic Element Ontology | 2026-08-04 09:40:03 | 0 | |||||||
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Vertebrate Skeletal Anatomy Ontology Resource Report Resource Website |
Vertebrate Skeletal Anatomy Ontology (RRID:SCR_000313) | VSAO | ontology, data or information resource, controlled vocabulary | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. An anatomy ontology covering the vertebrate skeletal system that integrates terms for skeletal cells, tissues, biological processes, organs (skeletal elements such as bones and cartilages), and subdivisions of the skeletal system. | obo |
is used by: Teleost Anatomy Ontology is listed by: BioPortal |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157624 | SCR_000313 | 2026-08-04 09:40:06 | 0 | ||||||||
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Research Network and Patient Registry Inventory Ontology Resource Report Resource Website |
Research Network and Patient Registry Inventory Ontology (RRID:SCR_000308) | RNPRIO | ontology, data or information resource, controlled vocabulary | Ontology for Inventories of Clinical Data Research Networks, Patient-Powered Research Networks, and Patient Registries | owl | is listed by: BioPortal | nlx_157575 | SCR_000308 | 2026-08-04 09:40:06 | 0 | |||||||||
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EnvO Resource Report Resource Website 10+ mentions |
EnvO (RRID:SCR_000182) | EnvO | ontology, data or information resource, controlled vocabulary | Community ontology for the concise, controlled description of environmental features and habitats. It provides a structured vocabulary that is designed to support the annotation of any organism or biological sample with environment descriptors. EnvO contains terms for biomes, environmental features, and environmental material. | biome, environmental feature, environmental material, environment, habitat |
is listed by: BioPortal is related to: Gramene |
The community can contribute to this resource | nlx_153832 | SCR_000182 | Environment Ontology | 2026-08-04 09:40:04 | 20 | |||||||
|
Information Artifact Ontology Resource Report Resource Website 1+ mentions |
Information Artifact Ontology (RRID:SCR_000477) | IAO | ontology, data or information resource, controlled vocabulary | An ontology of information entities, originally driven by work by the OBI digital entity and realizable information entity branch. Please note: The ontology metrics displayed by BioPortal do not distinguish IAO-developed terms from terms imported from other ontologies. | owl, information, ontology |
uses: Ontology for Biomedical Investigations is used by: TRANSFoRm Clinical Data Integration Model is listed by: BioPortal is listed by: OBO is listed by: Google Code is related to: Porifera Ontology is related to: Mental Functioning Ontology is related to: Beta Cell Genomics Ontology is related to: Biological Collections Ontology is related to: Chemical Methods Ontology is related to: Influenza Ontology is related to: Ontology for Genetic Interval is related to: Ontology for Parasite LifeCycle is related to: Ontology of Adverse Events is related to: Ontology of Medically Related Social Entities is related to: Population and Community Ontology is related to: Software Ontology is related to: Adverse Event Reporting Ontology is related to: Ontology for Biomedical Investigations |
Free, Available for download, Freely available | nlx_157441 | https://code.google.com/p/information-artifact-ontology/, http://purl.bioontology.org/ontology/IAO, http://purl.obolibrary.org/obo/iao.owl | http://purl.obolibrary.org/obo/iao | SCR_000477 | 2026-08-04 09:40:08 | 2 | ||||||
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Nursing Interventions Classification Resource Report Resource Website |
Nursing Interventions Classification (RRID:SCR_000911) | NIC | ontology, data or information resource, controlled vocabulary | Ontology of nursing interventions classification. | umls | is listed by: BioPortal | nlx_157512 | SCR_000911 | 2026-08-04 09:40:16 | 0 | |||||||||
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International Classification of Primary Care - 2 PLUS Resource Report Resource Website |
International Classification of Primary Care - 2 PLUS (RRID:SCR_000909) | ICPC2P | ontology, data or information resource, controlled vocabulary | Ontology of the international classification of primary care -2 PLUS | umls | is listed by: BioPortal | nlx_157454 | SCR_000909 | 2026-08-04 09:40:16 | 0 | |||||||||
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Synthetic Biology Open Language Visual Ontology Resource Report Resource Website |
Synthetic Biology Open Language Visual Ontology (RRID:SCR_001261) | SBOL | ontology, data or information resource, controlled vocabulary | Ontology to represent standardized graphical notation for synthetic biology. | obo | is listed by: BioPortal | Free, Available for download, Freely available | nlx_157601 | SCR_001261 | 2026-08-04 09:40:21 | 0 | ||||||||
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Teleost Taxonomy Ontology Resource Report Resource Website |
Teleost Taxonomy Ontology (RRID:SCR_001611) | TTO | ontology, data or information resource, controlled vocabulary | An ontology of taxonomic terms (names of taxonomic groups) used in the systematics of fish, including non-teleost groups such as Chondrichthys (sharks and rays), Sarcopterygii (lungfish and coelacanths), lampreys, and hagfish. It contains (as of August 2010) over 38,500 names, and over 44,000 taxonomic synonyms. A majority of the taxonomic names and synonyms were made available from the Catalog of Fishes. In July 2010 they added nearly 15,000 common names provided by Fishbase. Additional names and synonyms are added as a result of their curation activities. The ontology is being used to facilitate annotation of phenotypes, particularly for taxa that are not covered by NCBI because no submissions of molecular data have been made. Taxonomy ontologies can also be valuable in annotating legacy data, where authors make phenotype or ecological assertions (e.g., host-parasite associations) that refer to groups that are reorganized or no longer recognized. The taxonomy ontology serves as the source of taxa for their project's use for identifying evolutionary changes that match the phenotype of a zebrafish mutant. | taxonomy, term, name, group, fish, phenotype, obo |
is used by: Vertebrate Taxonomy Ontology is listed by: BioPortal is related to: Catalog of Fishes is related to: FishBase has parent organization: Phenoscape Knowledgebase |
Free, Freely available | nlx_153877 | https://www.nescent.org/phenoscape/ | SCR_001611 | 2026-08-04 09:40:25 | 0 | |||||||
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Cognitive Paradigm Ontology Resource Report Resource Website 1+ mentions |
Cognitive Paradigm Ontology (RRID:SCR_002235) | CogPO | ontology, data or information resource, controlled vocabulary | Ontology used to describe the experimental conditions within cognitive and behavioral experiments, primarily in humans for application and use in the functional neuroimaging community. CogPO has been developed through the integration of the Functional Imaging Biomedical Informatics Research Network (FBIRN) Human Imaging Database (HID) and the BrainMap Database. The design of CogPO concentrates on what can be observed directly: categorization of each paradigm in terms of (1) the stimulus presented to the subjects, (2) the requested instructions, and (3) the returned response. | functional neuroimaging, owl, cognition, behavior |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: BioPortal is related to: Human Imaging Database has parent organization: University of Texas Health Science Center at San Antonio; Texas; USA has parent organization: Mind Research Network |
NIMH 1R01MH084812-01A1 | Free, Freely available | nlx_155537 | http://www.nitrc.org/projects/cogpo | SCR_002235 | 2026-08-04 09:40:35 | 9 | ||||||
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CHEBI Resource Report Resource Website 100+ mentions |
CHEBI (RRID:SCR_002088) | ChEBI | database, data or information resource | Collection of chemical compounds and other small molecular entities that incorporates an ontological classification of chemical compounds of biological relevance, whereby the relationships between molecular entities or classes of entities and their parents and/or children are specified. The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms. | complex, conformer, ion, ion pair, isotope, molecular entity, molecule, radical, radical ion, small molecule, obo, gold standard, biochemistry, metabolomics, bio.tools |
uses: IUPAC uses: Nomenclature Committee of IUBMB is used by: Open PHACTS is used by: Ultimate Rough Aggregation of Metabolic Map is used by: RHEA is used by: GEROprotectors is used by: SwissLipids is listed by: OBO is listed by: BioPortal is listed by: NIF Data Federation is listed by: SourceForge is listed by: bio.tools is listed by: Debian is related to: Pathway Commons is related to: Integrated Manually Extracted Annotation has parent organization: European Bioinformatics Institute is parent organization of: Physico-Chemical Process is parent organization of: Physico-Chemical Methods and Properties works with: MiMeDB |
BBSRC BB/G022747/1 | PMID:19854951 PMID:19496059 PMID:17932057 |
Freely available | nif-0000-02655, biotools:chebi, r3d100012626 | http://bioportal.bioontology.org/ontologies/1007, http://www.obofoundry.org/cgi-bin/detail.cgi?id=chebi, ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo, http://chebi.wiki.sourceforge.net/, https://bio.tools/chebi | http://www.ebi.ac.uk/chebi/ | SCR_002088 | CHEBI, Chemical Entities of Biological Interest | 2026-08-04 09:40:33 | 126 | |||
|
Glycomics Ontology Resource Report Resource Website |
Glycomics Ontology (RRID:SCR_010333) | GLYCO | ontology, data or information resource, controlled vocabulary | Ontology that provides an up-to-date knowledge base of experimentally verified glycan structures. Glycan (oligosaccharide or polysaccharide) structures are represented as trees of monosaccharide residues. Linkage to proteins and lipids is supported as well. Insertion of a new glycan is controlled by curation process that includes matching the new glycan against a canonical glyco-tree (a highly branched representation for a family of glycans). | owl | is listed by: BioPortal | nlx_157421 | http://glycomics.ccrc.uga.edu/core4/informatics-ontologies.html | SCR_010333 | 2026-08-04 09:42:38 | 0 | ||||||||
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Single-Nucleotide Polymorphism Ontology Resource Report Resource Website |
Single-Nucleotide Polymorphism Ontology (RRID:SCR_010428) | SNPO | ontology, data or information resource, controlled vocabulary | A domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name it is not limited to the representation of SNPs but it encompasses genomic variations in a broader meaning. SNP-Ontology is general enough to enable the representation of variations observed in genome of various species. Latest versions of SNP-Ontology include the representation of haplotype and of CNV. The unambiguous representation of genomic variations provided by SNP-Ontology enables to integrate heterogeneous data related to genomic variations. To achieve this goal SNP-Ontology enables (1) to represent one variation in accordance with various ways that exist for describing it, (2) to represent the equivalence between two distinct descriptions of one variation, and (3) to represent correspondence between a genomic variation and its outcome at the transcriptome and proteome levels. | owl | is listed by: BioPortal | nlx_157587 | SCR_010428 | SNP Ontology, Single-Nucleotide Polymorphism (SNP) Ontology | 2026-08-04 09:42:41 | 0 | ||||||||
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Terminological and Ontological Knowledge Resources Ontology Resource Report Resource Website |
Terminological and Ontological Knowledge Resources Ontology (RRID:SCR_010432) | TOK | ontology, data or information resource, controlled vocabulary | An Ontology describing Resources having different formats. This Ontology can be used to annotate and describe Terminological, Ontological Knowledge resources. | owl | is listed by: BioPortal | nlx_157608 | SCR_010432 | 2026-08-04 09:42:40 | 0 | |||||||||
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EDDA Study Design Terminology Resource Report Resource Website |
EDDA Study Design Terminology (RRID:SCR_010312) | EDDA | ontology, data or information resource, controlled vocabulary | Ontology terms useful for machine learning experiments. The terminology appearing in JMLA has been enriched with terms from MeSH and Emtree, the controlled vocabularies for MEDLINE and Embase, respectively. Synonyms include American and British variants and some inverted terms. | obo |
is listed by: BioPortal has parent organization: University of Pittsburgh School of Medicine; Pennsylvania; USA |
NLM R00LM010943 | PMID:23646024 | nlx_157393 | SCR_010312 | Evidence in Documents Discovery and Analysis Study Design Terminology | 2026-08-04 09:42:38 | 0 | ||||||
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Tissue Microarray Ontology Resource Report Resource Website |
Tissue Microarray Ontology (RRID:SCR_010434) | TMA | ontology, data or information resource, controlled vocabulary | An OWL schema that expands upon the Tissue microarray (TMA) data exchange specification to assist in data sharing and integration. | owl | is listed by: BioPortal | nlx_157611 | SCR_010434 | 2026-08-04 09:42:41 | 0 | |||||||||
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Bone and Cartilage Tissue Engineering Ontology Resource Report Resource Website |
Bone and Cartilage Tissue Engineering Ontology (RRID:SCR_006595) | BCTEO | ontology, data or information resource, controlled vocabulary | Ontology that describes the field of Tissue Engineering for what concerns bone and cartilage tissues. | obo | is listed by: BioPortal | nlx_157341 | SCR_006595 | 2026-08-04 09:41:38 | 0 | |||||||||
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Biologie Hors Nomenclature Resource Report Resource Website |
Biologie Hors Nomenclature (RRID:SCR_010249) | BHN | ontology, data or information resource, controlled vocabulary | Nomenclature for innovative activity of biology and anatomo-pathology performed especially in the Centres Hospitalo-Universitaires is usually called activity off nomenclature (BHN for nomenclature and PHN biology for the anatomo-pathology off nomenclature). This character of nomenclature means that health insurance has not yet incorporated these acts in the Nomenclature of acts of biology medical (NABM) or the General Nomenclature of professional acts (NGAP). | owl | is listed by: BioPortal | nlx_157335 | http://www.chu-montpellier.fr/publication/inter_pub/R300/rubrique.jsp | SCR_010249 | 2026-08-04 09:42:37 | 0 | ||||||||
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Pathogen Transmission Ontology Resource Report Resource Website |
Pathogen Transmission Ontology (RRID:SCR_010404) | PTRANS | ontology, data or information resource, controlled vocabulary | Vocabulary that describes a process that is the means of how a pathogen is transmitted from one host, reservoir, or source to another host. This transmission may occur either directly or indirectly and may involve animate vectors or inanimate vehicles. | obo | is listed by: BioPortal | nlx_157542 | SCR_010404 | 2026-08-04 09:42:40 | 0 | |||||||||
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Plant Structure Development Stage Resource Report Resource Website 1+ mentions |
Plant Structure Development Stage (RRID:SCR_010410) | PSDS | ontology, data or information resource, controlled vocabulary | A controlled vocabulary of growth and developmental stages in various plants. Note that this has been subsumed into the Plant Ontology (PO). This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant structure development stage branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/ | obo |
is listed by: BioPortal has parent organization: Plant Ontology |
nlx_157555 | http://www.plantontology.org | SCR_010410 | 2026-08-04 09:42:40 | 2 |
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