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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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National Biomedical Center for Advanced ESR Technology Resource Report Resource Website 1+ mentions |
National Biomedical Center for Advanced ESR Technology (RRID:SCR_001444) | ACERT | biomedical technology research center, training resource | Biomedical technology research center that develops methods, both experimental and theoretical, of modern electron spin resonance (ESR) for biomedical applications. Center technologies are applicable to the determination of the structure and complex dynamics of proteins. Principal areas of expertise: * Pulsed Fourier Transform and Two Dimensional ESR * High Frequency-High Field (HFHF) ESR * High Resolution ESR Microscopy * Theory and Computational Methods for Modern ESR Activities include: * making resources available to the biomedical community, * publishing results, * running workshops on the new methodologies, * addressing the need to bring these new technologies to other laboratories. | electron spin resonance, spectrometer, electron spin resonance spectrometer, structure, dynamics, protein, structural biology technology center | has parent organization: Cornell University; New York; USA | NIGMS P41GM103521; NCRR P41RR016292 |
Free, Freely Available | nlx_152669 | SCR_001444 | ACERT National ESR Center, National Biomedical Center for Advanced Electron Spin Resonance Technology | 2026-09-12 01:03:11 | 1 | ||||||
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Laboratory for Fluorescence Dynamics Resource Report Resource Website 50+ mentions |
Laboratory for Fluorescence Dynamics (RRID:SCR_001437) | LFD | access service resource, biomedical technology research center, service resource, training resource | Biomedical technology research center and training resource that develops novel fluorescence technologies, including instrumentation, methods and software applicable to cellular imaging and the elucidation of dynamic processes in cells. The LFD's main activities are: * Services and Resources: the LFD provides a state-of-the-art laboratory for fluorescence measurements, microscopy and spectroscopy, with technical assistance to visiting scientists. * Research and Development: the LFD designs, tests, and implements advances in the technology of hardware, software, and biomedical applications. * Training and Dissemination: the LFD disseminates knowledge of fluorescence spectroscopic principles, instrumentation, and applications to the scientific community. | fluorescence, measurement, microscopy, spectroscopy, biochemistry, cell culture, data analysis, biomolecule, membrane, in-vitro, optical spectroscopy, biological process, tissue culture, fluorescence microscopy, optical and laser technology center | has parent organization: University of California at Irvine; California; USA | NIGMS 8P41GM103540; NCRR 5P41RR003155 |
Restricted | nlx_152663 | SCR_001437 | Laboratory for Fluorescence Dynamics (LFD) | 2026-09-12 01:03:11 | 51 | ||||||
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BioCARS Resource Report Resource Website 50+ mentions |
BioCARS (RRID:SCR_001439) | BioCARS | access service resource, biomedical technology research center, service resource, training resource | Biomedical technology research center and training resource that is a state-of-the art, national user facility for synchrotron-based studies of dynamic and static properties of macromolecules by X-ray scattering techniques such as crystallography (specializing in time-resolved), small- and wide-angle X-ray scattering and fiber diffraction. BioCARS operates two X-ray beamlines, embedded in a Biosafety Level 3 (BSL-3) facility unique in the U.S. that permits safe studies of biohazardous materials such as human pathogens., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | synchrotron, macromolecule, x-ray, crystallography, x-ray scattering, fiber diffraction, biological process, time-resolved crystallography, structural biology technology center | has parent organization: University of Chicago; Illinois; USA | NIGMS P41GM103543; NCRR P41RR007707 |
PMID:21685684 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152665 | http://cars9.uchicago.edu/biocars/ | SCR_001439 | BioCARS: A Synchrotron Structural Biology Resource | 2026-09-12 01:03:11 | 64 | ||||
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Laboratory of Neuro Imaging Resource Report Resource Website 50+ mentions |
Laboratory of Neuro Imaging (RRID:SCR_001922) | LONI | biomedical technology resource center, training resource | Biomedical technology resource center specializing in novel approaches and tools for neuroimaging. It develops novel strategies to investigate brain structure and function in their full multidimensional complexity. There is a rapidly growing need for brain models comprehensive enough to represent brain structure and function as they change across time in large populations, in different disease states, across imaging modalities, across age and sex, and even across species. International networks of collaborators are provided with a diverse array of tools to create, analyze, visualize, and interact with models of the brain. A major focus of these collaborations is to develop four-dimensional brain models that track and analyze complex patterns of dynamically changing brain structure in development and disease, expanding investigations of brain structure-function relations to four dimensions. | anatomic, animal, brain, brain function, brain structure, cerebral metabolism, human, mapping, neurobiological, software, neuroimaging, fmri, mri, neuroimaging, software, brain mapping, computational software, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Wavelet Analysis of Image Registration is related to: Sub-Volume Thresholding Analysis is related to: jViewbox is related to: MultiPhase-SEG is related to: LONI Java Image I/O Plugins is related to: DualSurfaceMin is related to: Charged Fluid Model for Brain Image Segmentation is related to: MINC/Atlases has parent organization: University of Southern California Keck School of Medicine; California; USA is parent organization of: Center for Computational Biology at UCLA is parent organization of: LONI Visualization Tool is parent organization of: International Consortium for Brain Mapping is parent organization of: LONI Provenance Editor is parent organization of: TetraMetrix is parent organization of: Synchronized Histological Image Viewing Architecture is parent organization of: LONI ShapeViewer is parent organization of: LONI ShapeTools is parent organization of: FFT Library is parent organization of: Mouse BIRN Atlasing Toolkit is parent organization of: MGH-USC Human Connectome Project is parent organization of: Mouse Connectome Project is parent organization of: LONI Inspector is parent organization of: Parkinson's Progression Markers Initiative is parent organization of: BrainSolution is parent organization of: BrainGraph Editor is parent organization of: INVIZIAN is parent organization of: LONI Brain Parser is parent organization of: LONI De-identification Debablet is parent organization of: iTools is parent organization of: Pipeline Neuroimaging VirtualEnvironment is parent organization of: MultiTracer is parent organization of: International Consortium for Brain Mapping |
NCRR 5 P41 RR013642 | LONI Software License | nif-0000-10494 | http://www.nitrc.org/projects/loni | http://loni.ucla.edu/ | SCR_001922 | UCLA Laboratory of Neuro Imaging, Laboratory of Neuroimaging, UCLA LONI, USC Laboratory of Neuro Imaging | 2026-09-12 01:03:12 | 65 | ||||
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Kansas University at Lawrence Protein Production Group Core Facility Resource Report Resource Website |
Kansas University at Lawrence Protein Production Group Core Facility (RRID:SCR_017749) | PPG | access service resource, core facility, service resource | Core focuses on cloning, expression and purification of prokaryotic and eukaryotic proteins for COBRE and other investigators in Kansas and region. Laboratory maintains equipment to support production of properly folded proteins in quantities suitable for structural studies (X-ray and NMR), functional studies (catalytic or biological), label-free binding studies (SPR) and/or high throughput (HTP) screening studies. | Protein, production, purification, expression, cloning, service, core | NCRR P20 RR017708; NIGMS P20 GM103420; NIGMS P30 GM110761 |
Open | ABRF_249 | SCR_017749 | KU COBRE Protein Production Group | 2026-09-12 01:04:01 | 0 | |||||||
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University of Delaware BioImaging Center Core Facility Resource Report Resource Website 1+ mentions |
University of Delaware BioImaging Center Core Facility (RRID:SCR_017814) | access service resource, core facility, service resource | Microscopy facility that houses equipment including confocal microscopes: LSM780 confocal microscope (Located at CBBI),LSM880 confocal microscope (Located at DBI 117),electron microscopes and their accessory instrumentation:Thermo Scientific Apreo VS SEM microscope,Hitachi S-4700, Leica EM ACE600 and Tousimis Autosamdri-815B,CX7 high content analysis system. Our staff has technical expertise across different microscopy platforms and methodologies. | Microscopy, bioimaging, confocal, electron, microscope, analysis, service, core |
is listed by: ABRF CoreMarketplace has parent organization: University of Delaware; Delaware; USA |
NCRR S10 RR027273; NIGMS P20 GM103446; NIGMS P20 GM113125; NIH Office of the Director S10 OD016361; NIH Office of the Director S10 OD025165; NSF IIA 1301765; State of Delaware |
Open | ABRF_537 | https://coremarketplace.org/?FacilityID=537&citation=1 | SCR_017814 | Delaware University BioImaging Center Core Facility, University of Delaware Bio-Imaging Center | 2026-09-12 01:04:02 | 1 | ||||||
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University of California at Berkeley Cancer Research Laboratory Molecular Imaging Center Core Facility Resource Report Resource Website 50+ mentions |
University of California at Berkeley Cancer Research Laboratory Molecular Imaging Center Core Facility (RRID:SCR_017852) | MIC | access service resource, core facility, service resource | Microscopy core specializing in laser based fluorescence techniques. Offers training and expertise in 20 different microscope systems, including live cell and in vivo imaging, laser scanning (LSM) and spinning disk (SDC) confocal, multi-photon (2p), fluorescent lifetime imaging (FLIM), light-sheet microscopy (SPIM), super resolution (Airyscan), slide scanning and patterned illumination for optogenetic manipulation and readout. Provides offline computer analysis workstations for image processing, visualization and analysis, including GPU workstations. MIC operates in 3 different buildings on campus, with primary locations in Life Sciences Addition (LSA), North-side core in Barker Hall, and small outpost in Li Ka Shing Center for Biomedical and Health Sciences (LKS).Provides equipment in categories:Confocal and multi photon laser scanning microscopes,Spinning disk confocal microscopes,Lightsheet (SPIM) microscopes,Epifluorescence/widefield scopes and Computer workstations. | Molecular, imaging, microscopy, system, laser, based, fluorescent, technique, live, cell, in vivo, slide, scanning, image, processing, visualization, analysis, service, core | Biological Faculty Research Fund ; Fidelity Foundation Award ; Gordon and Betty Moore Foundation ; Helen Wills Neuroscience Institute ; NCRR S10 RR027696; NCRR S10 RR028971; NEI R01 EY015514; NSF DBI 0116016; NSF DBI1041078 |
Open | ABRF_659 | SCR_017852 | CRL Molecular Imaging Center | 2026-09-12 01:04:03 | 70 | |||||||
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NeuroPedia Resource Report Resource Website 10+ mentions |
NeuroPedia (RRID:SCR_001551) | NeuroPedia | data or information resource, database | A neuropeptide encyclopedia of peptide sequences (including genomic and taxonomic information) and spectral libraries of identified MS/MS spectra of homolog neuropeptides from multiple species. | proteomics, peptide, neuropeptide, mass spectrometry assay, peptide sequence, spectrum, homolog | has parent organization: Center for Computational Mass Spectrometry | NCRR P41-RR024851; NIDA 5K01DA23065; NINDS R01 NS24553; NIDA R01 DA04271; NIMH R01 MH077305; NHLBI P01 HL58120 |
PMID:21821666 | Free, Freely available | nlx_152894 | SCR_001551 | NeuroPedia: Neuropeptide database and spectra library | 2026-09-12 01:01:22 | 12 | |||||
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UniProt Resource Report Resource Website 10000+ mentions |
UniProt (RRID:SCR_002380) | UniProt | data or information resource, database | Collection of data of protein sequence and functional information. Resource for protein sequence and annotation data. Consortium for preservation of the UniProt databases: UniProt Knowledgebase (UniProtKB), UniProt Reference Clusters (UniRef), and UniProt Archive (UniParc), UniProt Proteomes. Collaboration between European Bioinformatics Institute (EMBL-EBI), SIB Swiss Institute of Bioinformatics and Protein Information Resource. Swiss-Prot is a curated subset of UniProtKB. | collection, protein, sequence, annotation, data, functional, information |
is used by: LIPID MAPS Proteome Database is used by: ChannelPedia is used by: Open PHACTS is used by: DisGeNET is used by: Smart Dictionary Lookup is used by: MitoMiner is used by: Cytokine Registry is used by: MobiDB is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is used by: Phospho.ELM is used by: GEROprotectors is used by: SwissLipids is recommended by: NIDDK Information Network (dkNET) is recommended by: National Library of Medicine is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: LabWorm is related to: Clustal W2 is related to: UniProt DAS is related to: UniParc at the EBI is related to: ProDom is related to: LegumeIP is related to: Pathway Commons is related to: NIH Data Sharing Repositories is related to: FlyMine is related to: IMEx - The International Molecular Exchange Consortium is related to: 3D-Interologs is related to: Biomine is related to: EBIMed is related to: STOP is related to: Coremine Medical is related to: BioExtract is related to: STRAP is related to: GOTaxExplorer is related to: GoAnnotator is related to: IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures is related to: Whatizit is related to: MOPED - Model Organism Protein Expression Database is related to: Polbase is related to: PredictSNP is related to: PSICQUIC Registry is related to: IntAct is related to: p300db is related to: UniProt Proteomes is related to: SARS-CoV-2 mutation effects and 3D structure prediction from sequence covariation has parent organization: European Bioinformatics Institute has parent organization: SIB Swiss Institute of Bioinformatics has parent organization: Protein Information Resource is parent organization of: UniProtKB is parent organization of: NEWT is parent organization of: UniParc is parent organization of: UniProt Chordata protein annotation program is parent organization of: UniRef works with: Genotate works with: CellPhoneDB works with: MOLEonline works with: MiMeDB |
ARUK ; British Heart Foundation ; EMBL ; NCI ; NCRR P20 RR016472; NEI ; NHGRI P41 HG02273; NHGRI U24 HG007722; NHGRI U41 HG006104; NHLBI ; NIAID ; NIA ; NIDDK ; NIGMS 5R01GM080646; NIGMS R01 GM080646; NIMH ; NLM G08 LM010720; NSF DBI-0850319; PDUK |
PMID:19843607 PMID:18836194 PMID:18045787 PMID:17142230 PMID:16381842 PMID:15608167 PMID:14681372 |
nif-0000-00377, SCR_018750, r3d100010357 | http://www.ebi.uniprot.org, http://www.uniprot.org/uniprot/, http://www.pir.uniprot.org, ftp://ftp.uniprot.org, https://doi.org/10.17616/R3BW2M | SCR_002380 | , The Universal Protein Resource, Universal Protein Resource, UNIPROT Universal Protein Resource | 2026-09-12 01:01:25 | 19823 | |||||
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WormAtlas Resource Report Resource Website 100+ mentions |
WormAtlas (RRID:SCR_002861) | atlas, data or information resource, database | Anatomical atlas about structural anatomy of Caenorhabditis elegans. Provides simple interface allowing user to easily navigate through every anatomical structure of worm. Contains set of images which can be sorted by different characteristics: sex, genotype, age, body portion or tissue type. Includes links to other major worm websites and databases. Application for viewing and downloading thousands of unpublished electron micrographs and associated data. These images have been generated by several labs in the C. elegans community, including the MRC, the Hall lab (Center for C. elegans Anatomy), and the Culotti and Riddle labs. | electron, ganglion, anatomy, caenorhabditis elegan, c. elegan, cell, development, gfpworm, glossary, lineage, microscopy, morphology, video, nematode, nerve cord, nervous system, neuroanatomy, neuron, phenotype, wiring diagram, worm, image, FASEB list | has parent organization: Albert Einstein College of Medicine; New York; USA | NCRR ; NIH Office of the Director R24 OD010943 |
Free, Freely available | nif-0000-00098, nif-0000-25470, SCR_007295 | https://orip.nih.gov/comparative-medicine/programs/invertebrate-models | SCR_002861 | , WormImage, Worm Image Database | 2026-09-12 01:01:27 | 178 | ||||||
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SPAdes Resource Report Resource Website 100+ mentions |
SPAdes (RRID:SCR_000131) | SPAdes | software resource, software toolkit | Software package for assembling single cell genomes and mini metagenomes. Uses short read sets as input. Used for genomes of uncultivatable bacteria that vastly exceeds what may be obtained via traditional metagenomics studies. Works with Illumina or IonTorrent reads and can provide hybrid assemblies using PacBio, Oxford Nanopore and Sanger reads. Intended for small genomes like bacterial or fungal., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | assembler, single, cell, small, genome, short, read, data |
is used by: shovill is listed by: OMICtools is listed by: Debian is listed by: SoftCite is related to: rnaSPAdes is related to: rnaQUAST has parent organization: Saint Petersburg Academic University; Saint Petersburg; Russia works with: Illumina: iSeq 100 Sequencing System |
Government of the Russian Federation ; NCRR P41 RR024851 |
PMID:24093227 PMID:22506599 DOI:10.1089/cmb.2012.0021 |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01502 | https://sources.debian.org/src/spades/ | http://bioinf.spbau.ru/spades/ | SCR_000131 | SPAdes Genome Assembler | 2026-09-12 01:00:51 | 108 | |||
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International Gene Trap Consortium Resource Report Resource Website 10+ mentions |
International Gene Trap Consortium (RRID:SCR_002305) | IGTC | biomaterial supply resource, cell repository, material resource | Consortium represents all publicly available gene trap cell lines, which are available on non-collaborative basis for nominal handling fees. Researchers can search and browse IGTC database for cell lines of interest using accession numbers or IDs, keywords, sequence data, tissue expression profiles and biological pathways, can find trapped genes of interest on IGTC website, and order cell lines for generation of mutant mice through blastocyst injection. Consortium members include: BayGenomics (USA), Centre for Modelling Human Disease (Toronto, Canada), Embryonic Stem Cell Database (University of Manitoba, Canada), Exchangeable Gene Trap Clones (Kumamoto University, Japan), German Gene Trap Consortium provider (Germany), Sanger Institute Gene Trap Resource (Cambridge, UK), Soriano Lab Gene Trap Resource (Mount Sinai School of Medicine, New York, USA), Texas Institute for Genomic Medicine - TIGM (USA), TIGEM-IRBM Gene Trap (Naples, Italy). | embryo, embryonic, gene, genome, allele, analysis, assay, bioinformatics, blastocyst, cell, colony, consortium, genotyping, hybridization, in situ, international, knockout, murine, mutant, mutation, probe, qpcr, researcher, scientist, sequence, stem cell, tagging, trap, vector, cell line, embryonic stem cell line, FASEB list |
is listed by: One Mind Biospecimen Bank Listing is related to: Centre for Modeling Human Disease Gene Trap Resource has parent organization: University of California at San Francisco; California; USA is parent organization of: International Gene Trap Consortium Pathways |
NCRR P41 RR01081 | PMID:16381950 | Restricted | nif-0000-00036 | https://igtc.org/ | SCR_002305 | International Gene Trap Consortium | 2026-09-12 01:00:53 | 43 | ||||
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California National Primate Research Center Analytical and Resource Core Resource Report Resource Website 1+ mentions |
California National Primate Research Center Analytical and Resource Core (RRID:SCR_000696) | CNPRC Analytical and Resource Core | biomaterial supply resource, cell repository, material resource | The Analytical and Resource Core provides services and resources to the scientific research community in areas including hematology, clinical chemistry, genetics, immunology, endocrinology, flow cytometry, and pathogen detection. Available resources include biological specimens, viral stocks, DNA, and species-specific reagents. Scientists and staff associated with each of the seven Core Laboratories provide consultation in experimental design, sample collection, and data analysis, and offer assays that utilize species-specific reagents wherever possible. Core Laboratory scientists can also work with users to develop new assays to meet research needs. Training is available for all assays, and Core Laboratories equipment can be made available, typically on a recharge basis. Nonhuman primate resources developed at CNPRC are available to qualified individuals via the Resource Services component of the Core. * Clinical Laboratory * Endocrine Core Laboratory * Flow Cytometry Core Laboratory * Genetics Core Laboratory * Infectious Diseases Immunology Core Laboratory * Pathogen Detection Core Laboratory * Respiratory Disease Immunology Core Laboratory * Affiliated Laboratory: Clinical Proteomics Core Laboratory * Affiliated Laboratory: Microarray Core Facility * Resource Services: The following research resources of CNPRC are available to scientists on a recharge basis. ** Allergen: Characterized protein extracts of house dust mite (Dermatophagoides pteronyssinus and Dermatophagoides farinae) are available for allergen sensitization projects. ** Biological Specimens: Tissues collected at necropsy are available from rhesus monkeys (Macaca mulatta), cynomolgus monkeys (Macaca fascicularis), and titi monkeys (Callicebus cupreus). Contact: Biospecimens (at) primate.ucdavis.edu Blood samples are available through our blood donor program. ** Data: Data for colony animals are available from our computerized database. Data include birth records, weights, reproductive history, relocation history, etc. ** DNA: DNA extracted from peripheral blood mononuclear cells is available on animals of all age-sex classes from known pedigrees. ** Reagents and Samples: Reagents, controls, and known/unknown samples are available from the Pathogen Detection Core Laboratory. Samples include pedigreed sera/plasma, fixed tissues and DNA from macaques and various other species. Validated reagents for many pathogens are available, including SIV, SRV1-5, SFV, STLV, RRV, RhCMV, Herpes B, SV40, and LCV. More information is available at: http://pdl.primate.ucdavis.edu/PDLreagents.html. ** Shipping: Shipping services are available by trained staff who can properly document, package and ship critical experimental materials, including nonhuman primate samples. Assistance is also provided for obtaining CITES permits, required for international shipment of any nonhuman primate samples. ** Transformed B-Cell Lines: Cryopreserved Herpes papio - transformed B cell lines from over 300 rhesus monkeys in the CNPRC colony are available. Transformation of macaque B cells to establish a new cell line is available on request. ** Virus Stock: Rhesus Cytomegalovirus: A unique primary isolate, developed at CNPRC, is available. ** Virus Stock: Simian Immunodeficiency Virus: Aliquots of SIVmac251 and SIVmac239 virus stocks were prepared by propagation in peripheral blood mononuclear cells from rhesus macaques and contain approximately 100,000 50% tissue culture infectious doses per ml. As measured by the commercial SIV branched chain assay, SIVmac251 contains 2 x 109 copies of SIV RNA per ml and SIVmac239 contains 109 copies of SIV RNA per ml. These virus stocks are infectious for rhesus macaques by intravenous, intravaginal and oral routes of inoculation. | hematology, clinical chemistry, genetics, immunology, endocrinology, flow cytometry, pathogen detection, consultation, experimental design, sample collection, data analysis, assay development, clinical, endocrine, infectious disease, pathogen, respiratory disease, proteomics, microarray, macaque, siv, srv1-5, sfv, stlv, rrv, rhcmv, herpes b, sv40, lcv, rhesus monkey, cytomegalovirus, simian immunodeficiency virus, herpes papio, long-tailed macaque, south american titi monkey |
is listed by: One Mind Biospecimen Bank Listing has parent organization: California National Primate Research Center |
Cytomegalovirus, Simian Immunodeficiency Virus, Herpes papio, Respiratory disease, Etc. | NCRR P51 RR000169 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151305 | SCR_000696 | California National Primate Research Center Analytical Resource Core | 2026-09-12 01:00:51 | 4 | |||||
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Islet Cell Resource Centers Resource Report Resource Website 100+ mentions |
Islet Cell Resource Centers (RRID:SCR_002806) | ICR | biomaterial supply resource, cell repository, material resource | Group of 10 academic laboratories provide pancreatic islets of cGMP-quality to eligible investigators for use in FDA approved, IRB-approved transplantation protocols in which isolated human islets are transplanted into qualified patients afflicted with type 1 diabetes mellitus; optimize the harvest, purification, function, storage, and shipment of islets while developing tests that characterize the quality and predict the effectiveness of islets transplanted into patients with diabetes mellitus; and provide pancreatic islets for basic science studies. The centers are electronically linked through an Administrative and Bioinformatics Coordinating Center (ABCC). The ABCC manages a system with objectively defined criteria that establishes the order of priority for islet distribution. It also provides database and other informatics to track the utilization of pancreata and all distributed clinical grade islets for transplant and basic research, and supports the Islet Cell Resource Centers Consortium so that the research community has a single entry point to the program. Qualified researchers from domestic institutions may request islets by submitting a written application to the director of the ABCC. The ICRs will distribute Islets as appropriate for either clinical or basic science protocol use to eligible investigators who have received a favorable review and subsequent approval by the ICR Steering Committee (SC). The Administrative and Bioinformatics Coordinating Center (ABCC) manages the distribution according to a priority list. The ABCC will give preference to investigators who have peer-reviewed, NIH-funded research support. | pancreatic islet, clinical |
is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing is related to: NIDDK Information Network (dkNET) |
Type 1 diabetes, Diabetes | NIDDK ; Juvenile Diabetes Research Foundation International ; NCRR 1 U42 RR17673 |
Free, Freely available, Available for download | nif-0000-25418 | SCR_002806 | 2026-09-12 01:00:53 | 123 | ||||||
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eBIRT Resource Report Resource Website 1+ mentions |
eBIRT (RRID:SCR_004172) | eBIRT | data or information resource, database, portal | Venue for research resource discovery offering resource providers a platform to advertise their services and products, as well as investigators a means to locate services for their use. Search results may be refined by resource type, research area or institution. | resource repository, service repository, service database, resource database |
is related to: Clinical and Translational Science Awards Consortium has parent organization: Emory University; Georgia; USA |
NCRR | Public | nlx_143600 | SCR_004172 | eBIRT - Biomedical Interactive Resource Tool, Electronic Biomedical Interactive Resource Tool | 2026-09-12 01:00:54 | 1 | ||||||
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Mouse Connectome Project Resource Report Resource Website 10+ mentions |
Mouse Connectome Project (RRID:SCR_004096) | MCP | atlas, data or information resource, database | Three-dimensional digital connectome atlas of the C57Black/6J mouse brain and catalog of neural tracer injection cases, which will eventually cover the entire brain. Serial sections of each case are available to view at 10x magnification in the interactive iConnectome viewer. The Image Gallery provides a glimpse into some of the highlights of their data set. Representative images of multi-fluorescent tracer labeling can be viewed, while more in depth examination of these and all other cases can be performed in the iConnectome viewer. Phase 1 of this project involves generating a physical map of the basic global wiring diagram by applying proven, state of the art experimental circuit tracing methods systematically, uniformly, and comprehensively to the structural organization of all major neuronal pathways in the mouse brain. Connectivity imaging data for the whole mouse brain at cellular resolution will be presented within a standard 3D anatomic frame available through the website and accompanied by a comprehensive searchable online database. A Phase 2 goal for the future will allow users to view, search, and generate driving direction-like roadmaps of neuronal pathways linking any and all structures in the nervous system. This could be looked on as a pilot project for more ambitious projects in species with larger brains, such as human, and for providing a reliable framework for more detailed local circuitry mapping projects in the mouse. | tract tracing assay, adult mouse, connectivity, c57bl/6j, brain, olfactory bulb, piriform cortical area, lateral olfactory tract, connectome, neuronal tract tracing, nissl, image collection |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Mouse Biomedical Informatics Research Network is related to: BICCN has parent organization: Laboratory of Neuro Imaging |
NIMH MH094360-01A1; NCRR 3P41RR013642-12S3 |
PMID:22891053 | LONI Software License | nlx_143548 | http://www.nitrc.org/projects/mcp | SCR_004096 | UCLA Mouse Project | 2026-09-12 01:01:30 | 30 | ||||
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DTI White Matter Atlas Resource Report Resource Website |
DTI White Matter Atlas (RRID:SCR_005279) | DTI White Matter Atlas | atlas, data or information resource | DTI white matter atlases with different data sources and different image processing. These include single-subject, group-averaged, B0 correction, processed atlases (White Matter Parcellation Map, Tract-probability maps, Conceptual difference between the WMPM and tract-probability maps), and linear or non-linear transformation for automated white matter segmentation. # Adam single-subject white matter atlas (old version): These are electronic versions of atlases published in Wakana et al, Radiology, 230, 77-87 (2004) and MRI Atlas of Human White Matter, Elsevier. ## Original Adam Atlas: 256 x 256 x 55 (FOV = 246 x 246 mm / 2.2 mm slices) (The original matrix is 96x96x55 (2.2 mm isotropic) which is zerofilled to 256 x 256 ## Re-sliced Adam Atlas: 246 x 246 x 121 (1 mm isotropic) ## Talairach Adam: 246 x 246 x 121 (1 mm isotropic) # New Eve single-subject white matter atlas: The new version of the single-subject white matter atlas with comprehensive white matter parcellation. ## MNI coordinate: 181 x 217 x 181 (1 mm isotropic) ## Talairach coordinate: 181 x 217 x 181 (1 mm isotropic) # Group-averaged atlases: This atlas was created from their normal DTI database (n = 28). The template was MNI-ICBM-152 and the data from the normal subjects were normalized by affine transformation. Image dimensions are 181x217x181, 1 mm isotropic. There are two types of maps. The first one is the averaged tensor map and the second one is probabilistic maps of 11 white matter tracts reconstructed by FACT. # ICBM Group-averaged atlases: This atlas was created from ICBM database. All templates follow Radiology convention. You may need to flip right and left when you use image registration software that follows the Neurology convention. | white matter, brain, template, human, magnetic resonance imaging, diffusion tensor imaging, adult human, male, female, cerebellum, mni, talairach | has parent organization: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA | Normal | NCRR P41RR015241 | Account required | nlx_144313 | SCR_005279 | 2026-09-12 01:01:36 | 0 | ||||||
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WaNPRC Pathology and Tissue Program Resource Report Resource Website |
WaNPRC Pathology and Tissue Program (RRID:SCR_005589) | WaNPRC Pathology & Tissue Program | biomaterial supply resource, material resource, tissue bank | A comparative pathology unit offering pathology support, training programs, and a Tissue Distribution Program (TDP). The TDP provides a wide variety of nonhuman primate tissues to investigative groups within and outside the Washington National Primate Research Center (WaNPRC). Tissue and pathology services (ACVP board certified Veterinary Pathologists), full histology services (including immunohistochemistry and frozen sectioning), and protocol development consultation are available. The Pathology and Tissue Program is an integration of comparative pathology activities occurring at the Washington National Primate Research Center and those occurring within the University of Washington Department of Comparative Medicine ((DCM). Using this model, Washington National Primate Research Center pathologists provide routine pathology support for Washington National Primate Research Center animals, with ancillary support, expertise, and guidance provided by DCM pathologists and mission-dedicated technicians and laboratories. This integrated comparative pathology unit also provides an excellent training opportunity for students such as those enrolled in the Department of Comparative Medicine post-doctoral training program, which offers training in laboratory animal medicine and comparative pathology. A particularly important function of this comparative pathology unit is support of the Tissue Distribution Program. The TDP provides a wide variety of nonhuman primate tissues to investigative groups within and outside the WaNPRC. This program is an extremely valuable method of conserving the nonhuman primate resource. NHP tissues and biological materials are collected in preparation for RNA/DNA isolation, cell culture, immunohistochemistry/histology, anatomic dissection, and cell sorting. Capabilities of the TDP include, but are not limited to flash frozen preservation, sterile preparation, perfusion, technical surgical dissections, and OCT embedding. In conjunction with the Histology and Imaging core of the University of Washington DCM, research capabilities post-collection include in situ hybridization, confocal and fluorescent microscopy, live cell imaging (DeltaVision), and whole slide scanning with image analysis (Visiopharm, Nikon Elements, and Image Pro). Centralized coordination of nonhuman primate tissue requests with animal availability allows support for a large number of biomedical programs with significantly decreased impact on the animal resource. | tissue, biological material, rna, dna, cell, cell culture, immunohistochemistry, histology, flash frozen, frozen, sterile preparation, perfusion, technical surgical dissection, oct embedded, frozen section, macaca nemestrina, baboon, long-tailed macaque, rhesus monkey, monkey, in situ hybridization, confocal microscopy, fluorescent microscopy, image analysis, material service resource, training service resource, pathology |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Washington National Primate Research Center |
NCRR | Public: The Tissue Distribution Program provides a wide variety of nonhuman primate tissues to investigative groups within and outside the Washington National Primate Research Center. | nlx_146215 | SCR_005589 | WaNPRC Pathology and TDP, Washington National Primate Research Center Pathology and Tissue Program, Washington National Primate Research Center Pathology & Tissue Program, Washington National Primate Research Center Pathology Tissue Program, WaNPRC Pathology and Tissue Distribution Program | 2026-09-12 01:01:38 | 0 | ||||||
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California National Primate Research Center Resource Report Resource Website 10+ mentions |
California National Primate Research Center (RRID:SCR_006426) | CNPRC | data or information resource, organization portal, portal | Center for investigators studying human health and disease, offering the opportunity to assess the causes of disease, and new treatment methods in nonhuman primate models that closely recapitulate humans. Its mission is to provide interdisciplinary programs in biomedical research on significant human health-related problems in which nonhuman primates are the models of choice. | NPRC, NPRC Consortium, ORIP, drug, genetic, animal, biology, cause, cell, cynamolous, developmental, disease, health, human, immunology, model, nonhuman primate, physiology, primate, procedure, psychology, reproductive, surgery, surgical, therapy, titi, treatment, veterinarian, virology |
is listed by: Biositemaps is listed by: National Primate Research Center Consortium has parent organization: University of California at Davis; California; USA is parent organization of: California National Primate Research Center Analytical and Resource Core |
NCRR P51 RR000169; NIH Office of the Director P51 OD011107; NIH Office of the Director U42 OD010990 |
Free, Freely available, | nif-0000-24356 | https://orip.nih.gov/comparative-medicine/programs/vertebrate-models | http://www.cnprc.ucdavis.edu | SCR_006426 | 2026-09-12 01:00:56 | 21 | |||||
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Cellpack Resource Report Resource Website 1+ mentions |
Cellpack (RRID:SCR_006831) | cellPack | data processing software, software application, software resource | A specialized version of autoPack designed to pack biological components together. The current version is optimized to pack molecules into cells with biologically relevant interactions to populate massive cell models with atomic or near-atomic details. Components of the algorithm pack transmembrane proteins and lipids into bilayers, globular molecules into compartments defined by the bilayers (or as exteriors), and fibrous components like microtubules, actin, and DNA. | 3d packing software, pack, molecule, cell |
is related to: Autopack has parent organization: Autopack |
QB3 at UCSF Fellowship ; NSF 07576; NCRR P41 RR08605 |
GNU Lesser General Public License | nlx_151792 | https://sites.google.com/site/autofill21/, http://code.google.com/p/autofill/ | SCR_006831 | 2026-09-12 01:00:57 | 9 |
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