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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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OnEx - Ontology Evolution Explorer Resource Report Resource Website 1+ mentions |
OnEx - Ontology Evolution Explorer (RRID:SCR_000602) | OnEx | software resource, web application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 6,2023. Web-based application that integrates versions of 16 life science ontologies including the Gene Ontology, NCI Thesaurus and selected OBO ontologies with data leading back to 2002 in a common repository to explore ontology changes. It allows to study and apply the evolution of these integrated ontologies on three different levels. It provides global ontology evolution statistics and ontology-specific evolution trends for concepts and relationships and it allows the migration of annotations in case a new ontology version was released | ontology, gene, protein, function, process, component, ontology or annotation browser, evolution, trend, annotation, version |
is listed by: OMICtools is listed by: Gene Ontology Tools is related to: Gene Ontology is related to: NCI Thesaurus is related to: OBO has parent organization: University of Leipzig; Saxony; Germany |
BMBF 01AK803E; DFG |
PMID:19678926 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_02273, nlx_149129 | http://www.izbi.de/onex, http://aprilia.izbi.uni-leipzig.de:8080/onex/ | SCR_000602 | SciCrunch Registry | Ontology Evolution Explorer (OnEx), Ontology Evolution Explorer | 2026-11-07 11:54:07 | 1 | ||||
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Quebec Leukemia Cell Bank Resource Report Resource Website 1+ mentions |
Quebec Leukemia Cell Bank (RRID:SCR_004916) | BCLQ | biomaterial supply resource, cell repository, material resource | The primary objective of the Quebec Leukemia Cell Bank is to support basic and clinical blood cancer research. It also serves to provide an infrastructure and services aimed at facilitating the work of researchers in various fields, such as oncology, hematology and immunology in particular. Several researchers have already benefited from this infrastructure in the course of their work. The main missions of the Quebec Leukemia Cell Bank are : * To set up a bank of well-characterized human blood tumor cells. The constitutional DNA is also stored for the majority of samples. A computerized databank includes all laboratory tests performed on these specimens, as well as the corresponding clinical data. Before this bank was created, the absence of access to adequate blood tumor specimens severely hampered our researchers'' efforts to competitively pursue their work. Also, the availability of these specimens now makes it possible to establish an essential link between the basic and clinical research communities. * Provide chromosomal analysis by conventional cytogenetics and spectral karyotyping (SKY) for human and mouse cells. * Contribute to the training of specialized staff and students. The Quebec Leukemia Cell Bank is a provincial program that groups together hematologists, researchers and clinical scientists from four Quebec universities (Universit�������� Laval, McGill, Sherbrooke, Montr��������al) and Quebec research centers. The cell bank has been in operation since 2001. The purpose of this website is to raise awareness about our cell bank so we can continue to help an increasing number of researchers. | is listed by: One Mind Biospecimen Bank Listing | Leukemia | Cancer Research Network ; Maisonneuve-Rosemont Hospital ; Institute for Research in Immunology and Cancer ; Cole Foundation |
nlx_88275 | http://www.bclq.org | SCR_004916 | SciCrunch Registry | Banque de Cellules Leuc��������miques du Qu��������bec | 2026-11-07 12:01:27 | 1 | ||||||
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VideoLectures.NET Resource Report Resource Website |
VideoLectures.NET (RRID:SCR_001972) | VideoLectures.NET | data or information resource, narrative resource, training material, video resource | Award-winning free and open access educational video lectures repository. The lectures are given by distinguished scholars and scientists at the most important and prominent events like conferences, summer schools, workshops and science promotional events from many fields of Science. The portal is aimed at promoting science, exchanging ideas and fostering knowledge sharing by providing high quality didactic contents not only to the scientific community but also to the general public. All lectures, accompanying documents, information and links are systematically selected and classified through the editorial process taking into account also users' comments. | artificial science, machine learning, network, science, semantic, lecture, biology, chemistry, computers, computer science. environment, health sciences, life science, mathematics, medicine, physics, thechnology | has parent organization: Jozef Stefan Institute; Ljubljana; Slovenia | European Union | Unless otherwise noted, Creative Commons Attribution-NonCommercial-NoDerivs License, v3 | nif-0000-10544 | SCR_001972 | SciCrunch Registry | VideoLectures, Video Lectures: Exchange Ideas and Share Thoughts, VideoLectures.Net: Exchange Ideas & Share Thoughts | 2026-11-07 11:54:36 | 0 | ||||||
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JIST: Java Image Science Toolkit Resource Report Resource Website 10+ mentions |
JIST: Java Image Science Toolkit (RRID:SCR_008887) | JIST | data processing software, software application, software resource | A native Java-based imaging processing environment similar to the ITK/VTK paradigm. Initially developed as an extension to MIPAV (CIT, NIH, Bethesda, MD), the JIST processing infrastructure provides automated GUI generation for application plug-ins, graphical layout tools, and command line interfaces. This repository maintains the current multi-institutional JIST development tree and is recommended for public use and extension. JIST was originally developed at IACL and MedIC (Johns Hopkins University) and is now also supported by MASI (Vanderbilt University). | experimental control, modeling, quantification, segmentation, shape analysis, spatial transformation, workflow, macos, windows, os independent, bsd, linux, sunos/solaris, java, afni brik, analyze, cor, dicom, gifti, mgh/mgz, minc, minc2, nifti-1, nrrd, philips par/rec, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Debian is related to: Maps4Mipav (Exploratory JIST) is related to: MR Connectome Automated Pipeline is related to: Multi-Modal MRI Reproducibility Resource is related to: TOADS-CRUISE Brain Segmentation Tools is related to: CBS High-Res Brain Processing Tools is related to: JHU Proj. in Applied Medical Imaging is related to: DOTS WM tract segmentation has parent organization: Johns Hopkins University; Maryland; USA has parent organization: Vanderbilt University; Tennessee; USA |
NINDS 5R01NS037747; NINDS 1R01NS056307; NIA N01-AG-4-0012 |
PMID:20077162 | GNU Lesser General Public License | nlx_151344 | https://sources.debian.org/src/jist/ | SCR_008887 | SciCrunch Registry | Java Image Science Toolkit | 2026-11-07 12:01:32 | 20 | ||||
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GermOnline Resource Report Resource Website 10+ mentions |
GermOnline (RRID:SCR_002807) | GermOnline | data or information resource, database | Cross-species microarray expression database focusing on high-throughput expression data relevant for germline development, meiosis and gametogenesis as well as the mitotic cell cycle. The database contains a unique combination of information: 1) High-throughput expression data obtained with whole-genome high-density oligonucleotide microarrays (GeneChips). 2) Sample annotation (mouse over the sample name and click on it) using the Multiomics Information Management and Annotation System (MIMAS 3.0). 3) In vivo protein-DNA binding data and protein-protein interaction data (available for selected species). 4) Genome annotation information from Ensembl version 50. 5) Orthologs are identified using data from Ensembl and OMA and linked to each other via a section in the report pages. The portal provides access to the Saccharomyces Genomics Viewer (SGV) which facilitates online interpretation of complex data from experiments with high-density oligonucleotide tiling microarrays that cover the entire yeast genome. The database displays only expression data obtained with high-density oligonucleotide microarrays (GeneChips)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 15,2026. | fertility, development, germline, microarray, annotation, in vivo, protein-dna binding, protein-protein interaction, genome, ortholog, high-density oligonucleotide microarray, gene expression, genome annotation, gene orthology, genechip, tiling array, development, meiosis, gametogenesis, mitotic cell cycle, data set, data repository, bio.tools |
is listed by: 3DVC is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Ensembl is related to: OMA Browser has parent organization: National Institute of Health and Medical Research; Rennes; France |
Swiss Institute of Bioinformatics ; bioinformatics platform of Biogenouest ; National Institute of Health and Medical Research; Rennes; France ; University of Rennes 1; Rennes; France |
PMID:21149299 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:germonline, nif-0000-02906, r3d100010248 | https://bio.tools/germonline, https://doi.org/10.17616/R37K5Q | SCR_002807 | SciCrunch Registry | 2026-11-07 12:02:15 | 17 | |||||
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Type 1 Diabetes Genetics Consortium Resource Report Resource Website 1+ mentions |
Type 1 Diabetes Genetics Consortium (RRID:SCR_001557) | T1DGC | data or information resource, disease-related portal, portal, research forum portal, resource, topical portal | Data and biological samples were collected by this consortium organizing international efforts to identify genes that determine an individual risk of type 1 diabetes. It originally focused on recruiting families with at least two siblings (brothers and/or sisters) who have type 1 diabetes (affected sibling pair or ASP families). The T1DGC completed enrollment for these families in August 2009. They completed enrollment of trios (father, mother, and a child with type 1 diabetes), as well as cases (people with type 1 diabetes) and controls (people with no history of type 1 diabetes) from populations with a low prevalence of this disease in January 2010. T1DGC Data and Samples: Phenotypic and genotypic data as well as biological samples (DNA, serum and plasma) for T1DGC participants have been deposited in the NIDDKCentral Repositories for future research. | gene, genetics, genotyping, analytic, dna, serum, plasma, data set, biomaterial supply resource, phenotypic, genotypic, autoantibody, hla, phenotype, genotype |
is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Central Repository |
Type 1 diabetes, Diabetes | NIDDK ; NIAID ; NHGRI ; JDRF |
PMID:17130525 | Free, Freely available | nlx_152867 | SCR_001557 | SciCrunch Registry | Type 1 Diabetes Genetics Consortium (T1DGC) | 2026-11-07 11:54:27 | 2 | ||||
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DataCite Resource Report Resource Website 50+ mentions |
DataCite (RRID:SCR_004139) | nonprofit organization | Platform for storing, finding and accessing data that provides a service for data centres to mint DOIs and store associated metadata. Their goals are to establish easier access to scientific research data on the Internet, increase acceptance of research data as legitimate, citable contributions to the scientific record and support data archiving that will permit results to be verified and re-purposed for future study. DataCite is global, with member institutions offering services and advice directly where they are needed by the researchers. While datasets are shared and accessed globally, researchers work within national funding and organizational frameworks. It therefore operates globally, with national representation. The DataCite Metadata Scheme is a list of core metadata properties chosen for the accurate and consistent identification of data for citation and retrieval purposes, along with recommended use instructions. | data citation, data archiving |
is used by: California Digital Library is used by: Office of Scientific and Technical Information is used by: BGI; Shenzhen; China is used by: ETH Zurich; Zurich; Switzerland is used by: French National Center for Scientific Research is used by: Inter-university Consortium for Political and Social Research (ICPSR) is used by: University of Tartu; Tartu; Estonia is used by: Open Data Commons for Traumatic Brain Injury is used by: SPARC Portal is used by: Pacific Northwest National Laboratory DataHub: Scientific Data Repository is used by: COVID-19 Data Repository is used by: NIDDK Central Repository is used by: Marine Geoscience Data System is used by: National Addiction and HIV Data Archive Program (NAHDAP) is used by: Coherent X-Ray Imaging Data Bank (CXIDB) lists: Biological Magnetic Resonance Data Bank (BMRB) lists: ArrayExpress lists: GigaDB lists: Atlantic Canada Conservation Data Centre lists: Agri-environmental Research Data Repository lists: Australian Antarctic Data Centre lists: TARDIS lists: BioModels lists: Addgene lists: BOLD lists: FigShare lists: Standards-based Infrastructure with Distributed Resources lists: TAIR lists: Biomedical Informatics Research Network lists: 4TU.Datacentrum lists: Amazon Web Services Public Data Sets lists: Atlas of Living Australia lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database lists: Biological General Repository for Interaction Datasets (BioGRID) lists: Africa Centre for Health and Population Studies lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) lists: STRENDA lists: Brain Image Library lists: CaltechDATA lists: Code Ocean lists: CoMSES Net lists: DataONE lists: DANS lists: GBIF - Global Biodiversity Information Facility lists: German Collection of Microorganisms and Cell Cultures lists: Distributed Archives for Neurophysiology Data Integration lists: INPTDAT lists: Mendeley Data lists: Lamont-Doherty Core Repository lists: MorphoBank lists: Incorporated Research Institutions for Seismology lists: PhysioNet lists: Open Science Framework lists: Simtk.org lists: Synapse lists: OpenNeuro lists: Vivli lists: Cancer Imaging Archive (TCIA) lists: UK Data Archive lists: Dryad Digital Repository lists: Influenza Research Database (IRD) lists: ZENODO lists: National Snow and Ice Data Center lists: ResearchGate lists: Project Data Sphere lists: Qualitative Data Repository lists: Virus Pathogen Resource (ViPR) lists: Cambridge Structural Data Base lists: 4TU.ResearchData lists: Aperta Turkey Open Archive lists: Arch lists: Aston Data Explorer lists: Antarctic Meteorological Research and Data Center Repository lists: Polar Data Catalogue lists: Aston Publications Explorer lists: Astrobiology Habitable Environments Database lists: Australian Ocean Data Network lists: B2SHARE Eudat lists: Barbara A. Mikulski Archive for Space Telescopes lists: Australian Data Archive lists: BioHeritage National Science Challenge Data Repository lists: Abertay University Datasets lists: Birkbeck Research Data lists: BioData Management Portal lists: Bolin Centre Database lists: BRAIN Commons lists: SCAR Antarctic Biodiversity Portal lists: Brown Digital Repository lists: Canadian Polar Data Network lists: Berkeley Seismological Laboratory lists: Biocode Commons lists: DMPTool lists: California Digital Library lists: eScholarship lists: Center for Research in Biological Systems lists: CCHDO lists: California Coastal Atlas lists: Comprehensive Everglades Restoration Plan lists: CRCNS lists: DataMares lists: Drug Design Data Resource lists: EarthCube lists: Geotechnical Extreme Events Reconnaissance lists: iDASH lists: Kavli Institute for Theoretical Physics Online Talks lists: EarthRef lists: Engineering Biology Research Consortium lists: Lawrence Berkeley National Laboratory lists: LBNL OpenMSI lists: National Center for Ecological Analysis and Synthesis lists: Nightingale Open Science lists: Marine and Coastal Research Institute of Columbia; Santa Marta; Colombia lists: Open Tree of Life lists: Open Data Commons for Spinal Cord Injury lists: Arctic Data Center lists: Ocean Protection Council lists: Open Context lists: Partnership for Interdisciplinary Studies of Coastal Oceans lists: Triton Shared Computing Cluster lists: OpenTopography lists: UC Berkeley Research IT lists: Center for Effective Global Action lists: SDSC Center for Applied Internet Data Analysis lists: Project Production Systems Laboratory lists: UC Davis eScholarship lists: UC Davis Social Science Data Service lists: University of California Press lists: UC Natural Reserve System lists: University of California at Riverside; California; USA lists: University of California at San Diego; California; USA lists: UC Medical Humanities Consortium lists: Coastal Data Information Program lists: UCSC Library lists: University of California at Santa Barbara; California; USA lists: University of California at Los Angeles; California; USA lists: Center for Computational Mass Spectrometry lists: Metabolomics Workbench lists: UCSD WIFIRE lists: UC Davis Library lists: Network Data Exchange (NDEx) is listed by: FORCE11 is affiliated with: RAiD is related to: Redivis is parent organization of: DataCite Ontology is parent organization of: ODIN |
Public | grid.475826.a, nlx_16255, Wikidata: Q821542 | https://ror.org/04wxnsj81 | SCR_004139 | SciCrunch Registry | datacite.org, Data Cite | 2026-11-07 11:55:22 | 64 | |||||||
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Database of the Human Proteotheque Initiative Resource Report Resource Website |
Database of the Human Proteotheque Initiative (RRID:SCR_002076) | data or information resource, database | The Human Proteotheque Initiative is a multidisciplinary project aimed at building a repertoire of comprehensive maps of human protein interaction networks. The information contained in the Proteotheque is made publicly available through an interactive web site that can be consulted to visualize some of the fundamental molecular connections formed in human cells and to determine putative functions of previously uncharacterized proteins based on guilt by association. The process governing the evolution of HuPI towards becoming a repository of accurate and complete protein interaction maps is described. | function, cell, human, interaction, protein | PMID:18443628 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-20836 | http://hupi.ircm.qc.ca/hupi/index.jsp | SCR_002076 | SciCrunch Registry | HuPI | 2026-11-07 12:01:59 | 0 | |||||||
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Integrated X Chromosome Database Resource Report Resource Website |
Integrated X Chromosome Database (RRID:SCR_003028) | IXDB | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 08, 2013. A repository for physical mapping data of the human X chromosome that aims at providing a global view of genomic data at a chromosomal level including an integrated physical, genetic, transcript and sequence map of the human X chromosome. This implies acquiring, understanding and formatting an enormous amount of experimental results and can only be accomplished progressively. We have chosen to start the integration process with YAC maps generated by the community. These provide the basis for future higher resolution physical maps, as well as emerging transcript and sequence maps. The current content of IXDB therefore reflects this situation, with the emphasis placed on YAC mapping data. Due to their immediate value, IXDB has also started to systematically include bacterial clone contig maps and EST data. Currently IXDB does not store sequence data, although links to nucleic sequence databases are provided. | x chromosome, chromosome | has parent organization: Max Planck Institute for Molecular Genetics; Berlin; Germany | European Community CT961134; BMBF 01KW9608 |
PMID:9847156 PMID:9399812 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03059 | SCR_003028 | SciCrunch Registry | The Integrated X Chromosome Database | 2026-11-07 12:02:04 | 0 | |||||
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Gene Ontology Browsing Utility (GOBU) Resource Report Resource Website |
Gene Ontology Browsing Utility (GOBU) (RRID:SCR_005662) | GOBU | software resource, source code | Gene Ontology Browsing Utility (GOBU) (GOBU) is a Java-based software program for integrating biological annotation catalogs under an extendable software architecture. Users may interact with the Gene Ontology and user-defined hierarchy data of genes, and then use its plugins to (and not limited to) (1) browse the GO hierarchy with user defined data, (2) browse GO-oriented expression levels in the user data, (3) compute GO enrichment, and/or (4) customize data reporting. A set of classes and utility functions has been established so that a customized program can be made as a plugin or a command-line tool that programmically manipulate the Gene Ontology and specified user data. See the source code repository for examples. Reference Lin WD, Chen YC, Ho JM, Hsiao CD. GOBU: Toward an Integration Interface for Biological Objects. Journal of Information Science and Engineering. 2006 22(1):19-29. Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible | annotation, gene, browser, computation, visualization, software library, statistical analysis, term enrichment, ontology or annotation browser, ontology or annotation visualization |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Academia Sinica; Taipei; Taiwan |
Open unspecified license - Free for academic use | nlx_149098 | SCR_005662 | SciCrunch Registry | Gene Ontology Browsing Utility | 2026-11-07 12:04:27 | 0 | |||||||
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AIDA Toolkit Resource Report Resource Website 1+ mentions |
AIDA Toolkit (RRID:SCR_005914) | data access protocol, software resource, software toolkit, web service | A generic set of components that can perform a variety of tasks, such as learn new pattern recognition models, perform specialized search on resource collections, and store knowledge in a repository. W3C standards are used to make data accessible and manageable with semantic web technologies such as OWL, RDF(S), and SKOS. The AIDA Toolkit is directed at groups of knowledge workers that cooperatively search, annotate, interpret, and enrich large collections of heterogeneous documents from diverse locations. The server offers services for: text indexing and statistics, metadata storage and querying, thesaurus reasoning, annotation, text retrieval, spelling correction, synonym detection, and model learning. | software toolkit, web service, search, learning, storage, workflow, text indexing, text statistics, metadata storage, metadata querying, thesaurus reasoning, annotation, text retrieval, spelling correction, synonym detection, model learning | is related to: Taverna | Open source, Available as a web service, Available for download | nlx_149497 | http://adaptivedisclosure.org/aida/ | SCR_005914 | SciCrunch Registry | Adaptive Information Disclosure Application Toolkit | 2026-11-07 11:56:02 | 1 | |||||||
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GERON Resource Report Resource Website 1+ mentions |
GERON (RRID:SCR_008531) | GERON | software resource, software toolkit | A suite of web-based open source software programs for clinical and genetic study. The aims of this software development in the Laboratory of Neurogenetics, NIA, NIH are * Build retrievable clinical data repository * Set up genetic data bank * Eliminate redundant data entries * Alleviate experimental error due to sample mix-up and genotyping error. * Facilitate clinical and genetic data integration. * Automate data analysis pipelines * Facilitate data mining for genetic as well as environmental factors associated with a disease * Provide an uniformed data acquisition framework, regardless the type of a given disease * Accommodate the heterogeneity of different studies * Manage data flow, storage and access * Ensure patient privacy and data confidentiality/security. The GERON suite consists of several self contained and yet extensible modules. Currently implemented modules are GERON Clinical, Genotyping, and Tracking. More modules are planned to be added into the suite, in order to keep up with the dynamics of the research field. Each module can be used separately or together with others into a seamless pipeline. With each module special attention has been given in order to remain free and open to the academic/government user., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | clinical, genotyping, tracking, genetic, module, pipeline | has parent organization: Intramural Research Program | Aging | NIA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30610 | SCR_008531 | SciCrunch Registry | 2026-11-07 12:03:39 | 5 | ||||||
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caTRIP Resource Report Resource Website 1+ mentions |
caTRIP (RRID:SCR_003409) | caTRIP | data analysis software, data processing software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE documented June 4, 2013. Allows users to query across a number of caBIG data services, join on common data elements (CDEs), and view results in a user-friendly interface. With an initial focus on enabling outcomes analysis, caTRIP allows clinicians to query across data from existing patients with similar characteristics to find treatments that were administered with success. In doing so, caTRIP can help inform treatment and improve patient care, as well as enable the searching of available tumor tissue, enable locating patients for clinical trials, and enable investigating the association between multiple predictors and their corresponding outcomes such as survival caTRIP relies on the vast array of open source caBIG applications, including: * Tumor Registry, a clinical system that is used to collect endpoint data * cancer Text Information Extraction System (caTIES), a locator of tissue resources that works via the extraction of clinical information from free text surgical pathology reports. while using controlled terminologies to populate caBIG-compliant data structures * caTissue CORE, a tissue bank repository tool for biospecimen inventory, tracking, and basic annotation * Cancer Annotation Engine (CAE), a system for storing and searching pathology annotations * caIntegrator, a tool for storing, querying, and analyzing translational data, including SNP data Requires Java installation and network connectivity. | element, clinical, patient, structure, tissue, trial, tumor, common data element, clinician, data technician, java, outcomes research, ctsa | has parent organization: Cancer Biomedical Informatics Grid | NCI | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-33400 | SCR_003409 | SciCrunch Registry | 2026-11-07 11:54:56 | 2 | |||||||
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IPD-KIR - Killer-cell Immunoglobulin-like Receptors Resource Report Resource Website 10+ mentions |
IPD-KIR - Killer-cell Immunoglobulin-like Receptors (RRID:SCR_007748) | data or information resource, database | The IPD-KIR database provides a centralized repository for human KIR sequences. Killer-cell Immunoglobulin-like Receptors (KIR) have been shown to be highly polymorphic at the allelic and haplotypic level. KIRs are members of the immunoglobulin superfamily (IgSF) formerly called Killer-cell Inhibitory Receptors. They are composed of two or three Ig-domains, a transmembrane region and cytoplasmic tail which can in turn be short (activatory) or long (inhibitory). The Leukocyte Receptor Complex (LRC) which encodes KIR genes has been shown to be polymorphic, polygenic and complex like the MHC. | has parent organization: European Bioinformatics Institute | nif-0000-03041 | SCR_007748 | SciCrunch Registry | IPD-KIR | 2026-11-07 12:02:22 | 43 | ||||||||||
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National Psoriasis BioBank Resource Report Resource Website |
National Psoriasis BioBank (RRID:SCR_010537) | National Psoriasis BioBank | biomaterial supply resource, material resource | The National Psoriasis Victor Henschel BioBank is a collection of biological samples and clinical information used by qualified scientists to further the field of psoriasis genetics. Once completed, the National Psoriasis BioBank will be the largest collection of psoriasis DNA samples in the world, moving us closer to understanding the causes of psoriatic diseases, discovering more and better treatments and finding a cure. The BioBank is currently collecting DNA from people with and without psoriasis and/or psoriatic arthritis. Simply by donating your DNA����??a blood sample and a swab of your cheek cells����??and providing us with your medical history, you can help us find a cure. Samples will be processed and stored at a private laboratory and not at the National Psoriasis Foundation. The National Psoriasis BioBank is part of the Genetic Alliance BioBank (GA BioBank), a centralized repository for the collection, storage and distribution of biological samples (including DNA, serum, cells and tissues) and clinical data for genetic researchers. | psoriasis, normal, psoriatic arthritis, genetics, clinical data, dna, blood, cell, cheek cell |
is listed by: One Mind Biospecimen Bank Listing has parent organization: National Psoriasis Foundation has parent organization: Genetic Alliance Biobank |
Psoriasis, Normal, Psoriatic arthritis | Public: For qualified scientists to further the field of psoriasis genetics. | nlx_25849 | SCR_010537 | SciCrunch Registry | Victor Henschel BioBank, National Psoriasis Victor Henschel BioBank | 2026-11-07 12:03:53 | 0 | ||||||
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Autism Genetic Resource Exchange Resource Report Resource Website 1+ mentions |
Autism Genetic Resource Exchange (RRID:SCR_004403) | AGRE | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. A private repository of clinical and genetic information on families with autism. Genetic and clinical data are obtained from families that have more than one family member diagnosed with an Autism Spectrum Disorder. The biological samples, along with the accompanying clinical data, are made available to AGRE-approved researchers worldwide. As they become available, additional family pedigrees will be posted in the online catalog. Cell lines have been established for the majority of families in this collection and serum/plasma is available on a subset of the subjects until stocks are depleted. The diagnosis of autism has been made using the standard Autism Diagnostic Interview-Revised (ADI-R) algorithm and the Autism Diagnostic Observation Scale (ADOS-G). Detailed birth and medical histories (including basic dysmorphology assessments) on children as well as family and medical information for parents and unaffected siblings, are available for nearly all families. DNA, cell lines, serum, plasma and clinical information are made available to AGRE-approved researchers for analysis. | family registry, gene bank, genetics, autism diagnostic, interview, autism diagnostic observational scale, autism spectrum disorder, birth, clinical data, genome scan, genotypic data, medical history, pedigree, phenotypic data, dna, cell line, serum, plasma, biorepository, biospecimen, pervasive development disorder |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Autism Speaks |
Autism, Autism spectrum disorder, Pervasive Development Disorder | NIMH 1U24MH081810 | PMID:20955925 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00226 | SCR_004403 | SciCrunch Registry | 2026-11-07 12:03:33 | 1 | |||||
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MONARCH Initiative Resource Report Resource Website 10+ mentions |
MONARCH Initiative (RRID:SCR_000824) | Monarch | data or information resource, database | Repository of information about model organisms, in vitro models, genes, pathways, gene expression, protein and genetic interactions, orthology, disease, phenotypes, publications, and authors, and ability to navigate multi-scale spatial and temporal phenotypes across in vivo and in vitro model systems in context of genetic and genomic data, using semantics and statistics. Discovery system provides basic and clinical science researchers, informaticists, and medical professionals with integrated interface and set of discovery tools to reveal genetic basis of disease, facilitate hypothesis generation, and identify novel candidate drug targets. Database that indexes authoritative information on experimental models of disease from MGI, RGD and ZFIN. | disease, animal model, phenotype, model organism, in vitro model, gene, pathway, gene expression, protein interaction, genetic interaction, orthology, disease, publication, author, genetic, genomic, model system, genotype, drug, in vivo model |
uses: Animal QTLdb uses: Ensembl Variation uses: Human Phenotype Ontology is used by: NIF Data Federation is related to: Mouse Genome Informatics (MGI) is related to: Rat Genome Database (RGD) is related to: Zebrafish Information Network (ZFIN) is related to: openSNP is related to: Ancora is related to: PhenoGen Informatics is related to: Lifespan Observations Database has parent organization: Oregon Health and Science University; Oregon; USA is parent organization of: monarch-ontologies |
OD R24 OD011883 | PMID:26269093 | Free, Freely available | r3d100011594, nlx_152525, SCR_001373, nlx_152748 | https://orip.nih.gov/comparative-medicine/programs/genetic-biological-and-information-resources, https://doi.org/10.17616/R31M09 | SCR_000824 | SciCrunch Registry | MONARCH Integrated Disease Model, MONARCH Integrated Disease Models View, MONARCH Disease Models View, The MONARCH Initiative | 2026-11-07 11:54:13 | 13 | ||||
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Genomes Unzipped Resource Report Resource Website |
Genomes Unzipped (RRID:SCR_006870) | Genomes Unzipped | blog, data or information resource, data set, narrative resource, software resource, source code | A group blog providing expert, independent commentary on the personal genomics industry. The goal of the project is to provide genetic testing consumers with independent and informed analysis of developments in the field of genetics and the genetic testing industry. Members of Genomes Unzipped include active researchers in various fields of genetics, as well as specialists in the legal and public health issues surrounding new genomic technologies. Many of us have also been extensively involved in public communication about genetics. Members of the group have had their DNA tested with a variety of products. We have released all of these genetic data openly to the public, both as raw data and in a custom genome browser. As the project proceeds we plan to obtain more genetic tests ����?? up to and including whole genome sequencing ����?? and to continue to release these data to the world. The group is also performing analyses of our own raw genetic data to illustrate fundamental concepts in genetics, using software written both by group members and other collaborators; and we����??ll be releasing the code for that software in our new code repository. As the project expands, we����??ll be looking to add data from other volunteers to the project, as well as to collaborate with other ����??genome hackers����?? on the development of new tools for exploring genetic data. | genomics, genetics, dna, sequencing |
is used by: NIF Data Federation is used by: Integrated Blogs is listed by: OMICtools |
Except where otherwise specified, Creative Commons Attribution-ShareAlike License, v3 Unported, Genomes Unzipped project genetic data, Is made available under, CC0 | OMICS_01831, nlx_144200 | SCR_006870 | SciCrunch Registry | 2026-11-07 11:56:15 | 0 | ||||||||
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Knime Resource Report Resource Website 500+ mentions |
Knime (RRID:SCR_006164) | KNIME | data processing software, software application, software resource, software toolkit, text-mining software, workflow software | KNIME (Konstanz Information Miner) is a user-friendly and comprehensive Open-Source data integration, processing, analysis, and exploration platform. KNIME (naim) is a user-friendly graphical workbench for the entire analysis process: data access, data transformation, initial investigation, powerful predictive analytics, visualization and reporting. The open integration platform provides over 1000 modules (nodes), including those of the KNIME community and its extensive partner network. KNIME can be downloaded onto the desktop and used free of charge. KNIME products include additional functionalities such as shared repositories, authentication, remote execution, scheduling, SOA integration and a web user interface as well as world-class support. Robust big data extensions are available for distributed frameworks such as Hadoop. KNIME is used by over 3000 organizations in more than 60 countries. The modular data exploration platform, initially developed at the University of Konstanz, Germany, enables the user to visually create data flows, execute selected analysis steps, and later investigate the results through interactive views on data and models. KNIME is a proven integration platform for tools of numerous vendors due to its open and modular API. The KNIME.com product pipeline includes an Enterprise Server, Cluster Execution, Reporting solutions, and professional KNIME support subscriptions. KNIME.com also offer services such as data analysis, hands-on training and the development of customized components for KNIME. | platform, next-generation sequencing, data analysis, visualization, selection, analysis, high-throughput screening, data mining, drug discovery | has parent organization: University of Konstanz; Baden-Wurttemberg; Germany | PMID:23110532 PMID:22644661 PMID:22607449 PMID:21984761 PMID:21873641 |
nlx_151666 | SCR_006164 | SciCrunch Registry | Konstanz Information Miner | 2026-11-07 11:56:11 | 770 | |||||||
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Database on Brain Map Transformations in Cerebellar Systems Resource Report Resource Website 1+ mentions |
Database on Brain Map Transformations in Cerebellar Systems (RRID:SCR_008052) | data or information resource, database | This site contains the NeSys archive on structure and structure-function data about brain map transformations in the cerebellar system of the rat. This archive presents data not illustrated in the original publications, downloadable original data sets, interactive illustration sequences, including 3-D models. The repository is based on 5 original publications. The publications deal with: - organization of projections to the pontine nuclei from three cortical areas: primary and secondary somatosensory areas (SI and SII), and the primary motor cortex (MI) - organization of pontine neurons projecting to somatosensory representations in the posterior cerebellum The data are also included in the FACCS application, a relational database application with embedded analytical tools, available via the The Rodent Brain Workbench (www.rbwb.org). Sponsors: NeSys Research and Database development is supported by The Research Council of Norway, The European Community (grants QLRT-2000-02256 and QLG3-CT 1999-00763), The Norwegian Consortium for High Performance Computing, and The Jahre Foundation. | brain, cerebellar, cortical, map, organization, ponine nucleus, posterior cerebellum, primary motor cortex, rat, somatosensory, structure, structure-function, system | has parent organization: University of Oslo; Oslo; Norway | nif-0000-10374 | SCR_008052 | SciCrunch Registry | NeSys Database | 2026-11-07 12:03:05 | 1 |
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