NITRC-IR
Resource Report
Resource Website
1+ mentions
|
NITRC-IR (RRID:SCR_004162)
|
NITRC IR
|
catalog, data or information resource, data repository, database, image database, image repository, service resource, storage service resource
|
Data repository for neuroimaging data in DlCOM and NIFTI formats. It allows users to search for and freely download publicly available data sets relating to normal subjects and those with diagnoses such as: schizophrenia, ADHD, autism, and Parkinson's disease.XNAT-based image registry that supports both NIfTI and DICOM images to promote re-use and integration of NIH funded data.
|
database, neuroimaging, magnetic resonance, mri, image collection, nifti, dicom
|
uses: XNAT Central
is used by: NIF Data Federation
lists: 1000 Functional Connectomes Project
lists: studyforrest.org
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: 1000 Functional Connectomes Project
is related to: NITRC Enhanced Services
has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC)
|
Bipolar Disorder, Schizophrenia, Parkinson's disease, ADHD |
NIBIB U24 EB023398;
NINDS R44 NS074540 |
PMID:26044860 |
Free, Available for download, Freely available |
|
nlx_18447, SCR_015623 |
|
|
|
SCR_004162 |
SciCrunch Registry |
NeuroImaging Tools and Resources Collaboratory Image Repository, NITRC Image Repository |
2026-11-07 11:55:10 |
8 |
NeuroPod
Resource Report
Resource Website
|
NeuroPod (RRID:SCR_004329)
|
NeuroPod
|
data or information resource, narrative resource, podcast
|
NeuroPod is the neuroscience podcast from Nature, produced in association with the Dana Foundation. Each month, join us as we delve into the latest research on the brain, from its molecular makings to the mysteries of the mind. We''ll also be bringing you the latest news from neuroscience conferences around the globe, along with special reports on hot areas in neuroscience.
|
|
is used by: NIF Data Federation
is related to: Integrated Podcasts
|
|
The Dana Foundation |
|
|
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nlx_34737 |
|
|
|
SCR_004329 |
SciCrunch Registry |
NeuroPod Podcasts |
2026-11-07 11:55:19 |
0 |
Gray Matters
Resource Report
Resource Website
|
Gray Matters (RRID:SCR_004433)
|
|
data or information resource, narrative resource, podcast
|
THIS RESOURCE IS NO LONGER IN SERVICE, documented on September 06, 2013. Gray Matters is a radio series on brain topics that has been produced since 1994 by Public Radio International in association with the Dana Alliance. More than 25 programs have been created on topics ranging from stress, neuroethics, learning throughout life and sports, fitness and the Brain. Dana Alliance members serve as advisers to Gray Matters programming and are interviewed during the programs. The transcripts are also available.
|
|
is used by: NIF Data Federation
is related to: Integrated Podcasts
|
|
The Dana Foundation |
|
THIS RESOURCE IS NO LONGER IN SERVICE |
|
nlx_54435 |
|
|
|
SCR_004433 |
SciCrunch Registry |
Gray Matters Radio Series |
2026-11-07 11:55:47 |
0 |
Health.Data.gov
Resource Report
Resource Website
10+ mentions
|
Health.Data.gov (RRID:SCR_004386)
|
|
data or information resource, database, software resource
|
Public, high-value federal datasets, tools, and applications using data about health and health care gathered from agencies across the U.S. government.
|
health, medicare, medicaid, epidemiology, treatment, population statistics, biomedical research, safety, administrative, health care cost, quality measurement, health care provider, children's health, child, health care, data set
|
is used by: NIF Data Federation
is used by: Integrated Datasets
has parent organization: Data.gov
|
|
|
|
Public, Acknowledgement requested |
|
r3d100010593, nlx_143714 |
https://doi.org/10.17616/R3589H |
http://www.data.gov/communities/node/81/data_tools |
|
SCR_004386 |
SciCrunch Registry |
US HealthData Gov, Health Data and Tools, Health.Data.gov Data Tools, Health Data and Tools Available on Data.gov |
2026-11-07 11:55:20 |
20 |
TAIR
Resource Report
Resource Website
5000+ mentions
|
TAIR (RRID:SCR_004618)
|
TAIR, AGI LocusCode
|
data or information resource, database
|
Database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. Data available includes the complete genome sequence along with gene structure, gene product information, metabolism, gene expression, DNA and seed stocks, genome maps, genetic and physical markers, publications, and information about the Arabidopsis research community. Gene product function data is updated every two weeks from the latest published research literature and community data submissions. Gene structures are updated 1-2 times per year using computational and manual methods as well as community submissions of new and updated genes. TAIR also provides extensive linkouts from data pages to other Arabidopsis resources. The data can be searched, viewed and analyzed. Datasets can also be downloaded. Pages on news, job postings, conference announcements, Arabidopsis lab protocols, and useful links are provided.
|
genetic, molecular biology, gene, genome, structure, product, metabolism, gene expression, dna, seed stock, genome map, genetic marker, physical marker, genome sequence, gene product, blast, experimental protocol, gold standard
|
is used by: NIF Data Federation
is listed by: OMICtools
is listed by: re3data.org
is listed by: DataCite
is related to: AmiGO
is related to: Saskatoon Arabidopsis T-DNA mutant population SK Collection
is related to: CLENCH
has parent organization: Carnegie Institution for Science
is parent organization of: TAIR Keyword Browser
is parent organization of: PubSearch
|
|
NSF DBI-0850219;
corporate and nonprofit organizations |
PMID:22140109
PMID:17986450
PMID:12444417
PMID:12519987
PMID:18287693 |
|
|
r3d100010185, nlx_61477, OMICS_01662 |
https://doi.org/10.17616/R3QW21 |
|
|
SCR_004618 |
SciCrunch Registry |
AGI LocusCode, The Arabidopsis Information Resource |
2026-11-07 11:55:17 |
9170 |
GeneDB Lmajor
Resource Report
Resource Website
1+ mentions
|
GeneDB Lmajor (RRID:SCR_004613)
|
GeneDB_Lmajor, GeneDB Lmajor, GeneDB L. major,
|
analysis service resource, data analysis service, data or information resource, database, production service resource, service resource
|
Database of the most recent sequence updates and annotations for the L. major genome. New annotations are constantly being added to keep up with published manuscripts and feedback from the Trypanosomatid research community. You may search by Protein Length, Molecular Mass, Gene Type, Date, Location, Protein Targeting, Transmembrane Helices, Product, GO, EC, Pfam ID, Curation and Comments, and Dbxrefs. BLAST and other tools are available. Leishmania species cause a spectrum of human diseases in tropical and subtropical regions of the world. We have sequenced the 36 chromosomes of the 32.8-megabase haploid genome of Leishmania major (Friedlin strain) and predict 911 RNA genes, 39 pseudogenes, and 8272 protein-coding genes, of which 36% can be ascribed a putative function. These include genes involved in host-pathogen interactions, such as proteolytic enzymes, and extensive machinery for synthesis of complex surface glycoconjugates. The Pathogen Genomics group at the Wellcome Trust Sanger Institute played a major role in sequencing the genome of Leishmania major (see Ivens et al.) Details of the centres involved and which chromosomes they sequenced, are given. The sequence data were obtained by adopting several parallel approaches, including complete cosmid sequencing, whole chromosome shotguns and/or BAC sequencing/skimming. The Leishmania parasite is an intracellular pathogen of the immune system targeting macrophages and dendritic cells. The disease Leishmaniasis affects the populations of 88 counties worldwide with symptoms ranging from disfiguring cutaneous and muco-cutaneous lesions that can cause widespread destruction of mucous membranes to visceral disease affecting the haemopoetic organs. In collaboration with GeneDB, the EuPathDB genomic sequence data and annotations are regularly deposited on TriTrypDB where they can be integrated with other datasets and queried using customized queries.
|
genome, gene, rna gene, rna, pseudogene, protein-coding, function, host-pathogen interaction, interaction, proteolytic enzyme, glycoconjugate, sequence annotation
|
is used by: NIF Data Federation
is related to: AmiGO
is related to: TriTrypDB
has parent organization: GeneDB
|
|
Wellcome Trust |
PMID:16020728 |
|
|
nlx_60997 |
|
|
|
SCR_004613 |
SciCrunch Registry |
Leishmania major strain Friedlin, Leishmania major strain Friedlin homepage on GeneDB, GeneDB Leishmania major, Leishmania major strain Friedlin on GeneDB |
2026-11-07 11:55:33 |
7 |
MPO
Resource Report
Resource Website
10+ mentions
|
MPO (RRID:SCR_004855)
|
MPO, MP
|
controlled vocabulary, data or information resource, ontology
|
Community ontology to provide standard terms for annotating mammalian phenotypic data. It has a hierarchical structure that permits a range of detail from high-level, broadly descriptive terms to very low-level, highly specific terms. This range is useful for annotating phenotypic data to the level of detail known and for searching for this information using either broad or specific terms as search criteria. Your input is welcome.
|
mus, phenotype, obo
|
is used by: NIF Data Federation
is listed by: BioPortal
is related to: Rat Genome Database (RGD)
is related to: MouseBook
is related to: Neurocarta
is related to: phenomeNET
has parent organization: OBO
has parent organization: Mouse Genome Informatics (MGI)
|
|
|
PMID:17989687 |
The community can contribute to this resource |
|
nlx_83784 |
http://obofoundry.org/cgi-bin/detail.cgi?id=mammalian_phenotype, http://purl.bioontology.org/ontology/MP |
|
|
SCR_004855 |
SciCrunch Registry |
Mammalian Phenotype Ontology |
2026-11-07 11:55:26 |
19 |
Neurology Podcast
Resource Report
Resource Website
|
Neurology Podcast (RRID:SCR_004887)
|
Neurology Podcast
|
data or information resource, narrative resource, podcast
|
Neurology Podcast is a weekly podcast of content from Neurology, the official journal of the American Academy of Neurology. The Neurology podcast is introduced by Editor-in-Chief Robert A. Gross, MD, PhD, who discusses several highlighted articles in the current issue of the journal. The podcast features an interview with the author of an article in the current issue that summarizes the paper and discusses the main findings and clinical implications for neurologists. It concludes with the Lesson of the Week, a short segment on a topic such as a laboratory technique, statistical methods, or historical neurology.
|
|
is used by: NIF Data Federation
is related to: Integrated Podcasts
has parent organization: American Academy of Neurology
|
|
|
|
|
|
nlx_85698 |
|
|
|
SCR_004887 |
SciCrunch Registry |
Neurology Podcasts |
2026-11-07 11:55:50 |
0 |
PANTHER
Resource Report
Resource Website
5000+ mentions
|
PANTHER (RRID:SCR_004869)
|
PANTHER
|
analysis service resource, controlled vocabulary, data analysis service, data or information resource, database, ontology, production service resource, service resource
|
System that classifies genes by their functions, using published scientific experimental evidence and evolutionary relationships to predict function even in absence of direct experimental evidence. Orthologs view is curated orthology relationships between genes for human, mouse, rat, fish, worm, and fly., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
|
hidden markov model, human, mouse, genome, protein, gene, function, pathway, ortholog, phylogenetic tree, gene ortholog, protein family, gene function, evolution, data set, molecular function, biological process, cellular component, transcript, FASEB list
|
is used by: NIF Data Federation
is used by: YPED
is used by: EMBRYS
is related to: Gene Ontology
is related to: Pathway Commons
is related to: KOBAS
has parent organization: University of Southern California; Los Angeles; USA
is parent organization of: PANTHER Evolutionary analysis of coding SNPs
|
|
NIGMS GM081084 |
PMID:23193289
PMID:20015972
PMID:12952881 |
THIS RESOURCE IS NO LONGER IN SERVICE |
|
SCR_015893, nlx_84521 |
|
|
|
SCR_004869 |
SciCrunch Registry |
PANTHER Classification System, Protein ANalysis THrough Evolutionary Relationships Classification System, Protein ANalysis THrough Evolutionary Relationships, PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System |
2026-11-07 11:55:26 |
8830 |
BrainPod
Resource Report
Resource Website
|
BrainPod (RRID:SCR_004779)
|
BrainPod
|
data or information resource, narrative resource, podcast
|
BrainPod is the podcast from the journal Neuropsychopharmacology. Join us as we delve into the latest basic and clinical research that advance our understanding of the brain and behavior, featuring highlighted content from a top journal in fields of neuroscience, psychiatry, and pharmacology.
|
|
is used by: NIF Data Federation
is related to: Integrated Podcasts
|
|
|
|
|
|
nlx_77376 |
|
|
|
SCR_004779 |
SciCrunch Registry |
NPP Podcast, Neuropsychopharmacology Podcast, BrainPod Podcast |
2026-11-07 11:55:49 |
0 |
NIH Neuroscience Microarray Consortium
Resource Report
Resource Website
1+ mentions
|
NIH Neuroscience Microarray Consortium (RRID:SCR_004930)
|
|
analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource
|
THIS RESOURCE IS NO LONGER IN SERVICE, documented on April 24, 2012. (no longer being funded) The NIH Microarray Consortium provides for-fee services to a community of NIH grantees, together with a more limited set of services to the public. The primary goal of this consortium is to move basic and translational research forward through acquisition and dissemination of high quality genomic data. This site includes a repository of microarray data sets and offers one-click links to public projects. These datasets were generated by various researchers on these platforms: Affymetrix, Agilent, Ambion, cDNA, Illumina, and Operon. The species currently covered are: Arabidopsis, Bovine, chicken, C. Elegans, Drosophila, Human, Macaca mulatta (Rhesus macaque), Mouse, Rat, Songbird, Xenopus, Yeast, and zebra finch. Basic search functions allows users to choose multiple options for finding the projects that interest them, and raw data files can also be downloaded after user registration. Web-based data analysis tools are also available. Scientists can analyze microarray data from the consortium repository or investigators can upload outside data for analysis.
|
arabidopsis, bos taurus, chicken, caenorhabditis elegans, drosophila, human, rhesus monkey, mouse, rat, songbird, xenopus, yeast, zebra finch
|
is used by: NIF Data Federation
is related to: Songbird Brain Transcriptome Database
has parent organization: National Institutes of Health
|
|
NIH Blueprint for Neuroscience Research |
|
THIS RESOURCE IS NO LONGER IN SERVICE |
|
nif-0000-00074 |
|
http://arrayconsortium.tgen.org, http://np2.ctrl.ucla.edu/np2/home.do |
|
SCR_004930 |
SciCrunch Registry |
NIH Neuroscience Microarray Consortium |
2026-11-07 11:55:40 |
4 |
Naturejobs
Resource Report
Resource Website
|
Naturejobs (RRID:SCR_005151)
|
Naturejobs
|
data or information resource, job resource, narrative resource
|
Search for the widest range of science jobs with thousands of vacancies advertised globally on the site. Employers range from top international pharmaceutical and biotechnology companies to highly respected academic and government institutions. Job seekers can find a wide range of scientific career information and news as well as expert advice, all free to access. What''s more, employers can post jobs for free.
|
employment, science, life science, physical science, applied science, clinical medicine, news, clinical, medicine, database, career
|
is used by: NIF Data Federation
is listed by: OMICtools
is related to: Integrated Jobs
has parent organization: Nature Publishing Group
|
|
|
|
Free, The community can contribute to this resource |
|
OMICS_01824, nlx_144163 |
|
|
|
SCR_005151 |
SciCrunch Registry |
naturejobs.com, naturejobs.com - The premier science jobs recruitment website |
2026-11-07 11:55:31 |
0 |
jobs.ac.uk
Resource Report
Resource Website
1+ mentions
|
jobs.ac.uk (RRID:SCR_005154)
|
jobs.ac.uk
|
job resource
|
International job board for careers in academic, research, science and related professions in the UK, Europe, Australasia, Africa, America and Asia & Middle East. Launched by the University of Warwick, they have grown to become the top recruitment site in their sector, attracting the most qualified and talented people from the UK, Europe and across the world. Users may subscribe to Jobs by Email for vacancies in universities, colleges, research institutions, commercial and public sector, schools and charities. You may upload your CV to give yourself an advantage by making your CV visible to top employers now!
|
job seeker, employer, career, curriculum vitae, recruit, employment, database, data storage repository
|
is used by: NIF Data Federation
is listed by: OMICtools
is related to: Integrated Jobs
has parent organization: University of Warwick; Coventry; United Kingdom
|
|
|
|
The community can contribute to this resource |
|
OMICS_01829, nlx_144167 |
|
|
|
SCR_005154 |
SciCrunch Registry |
|
2026-11-07 11:55:27 |
3 |
LabSpaces
Resource Report
Resource Website
|
LabSpaces (RRID:SCR_005169)
|
LabSpaces
|
blog, community building portal, data or information resource, experimental protocol, narrative resource, portal
|
LabSpaces.net is a social network for the scientific community designed to spread scientific news, maintain and create friendships, and harbor collaboration through the internet. The site serves as a web profile for researchers and labs, and is also a community for active communication in the sciences. Current Features LabSpaces offers a wide range of features that will attract and engage researchers. Some of these features include: A Science News feed updated daily with ~40 news articles, UserProfiles, Friends, A Messaging system, Groups, Lab Profiles with Lab members, Lab Picture albums, Collaboration Profiles, Science Discussion Forum, Publication Database, Protocol Database, and free Blogs upon request.
|
research, social network, science, news
|
is used by: NIF Data Federation
is used by: Integrated Blogs
is parent organization of: Lady Scientist
is parent organization of: H2SO4Hurts
is parent organization of: Daring Nucleic Adventures - genegeek
|
|
|
|
|
|
nlx_144199 |
|
|
|
SCR_005169 |
SciCrunch Registry |
LabSpaces.net, Lab Spaces |
2026-11-07 11:55:47 |
0 |
IXI dataset
Resource Report
Resource Website
10+ mentions
|
IXI dataset (RRID:SCR_005839)
|
IXI dataset
|
data or information resource, data set, portal, project portal
|
Data set of nearly 600 MR images from normal, healthy subjects, along with demographic characteristics, collected as part of the Information eXtraction from Images (IXI) project available for download. Tar files containing T1, T2, PD, MRA and DTI (15 directions) scans from these subjects are available. The data has been collected at three different hospitals in London: * Hammersmith Hospital using a Philips 3T system * Guy''s Hospital using a Philips 1.5T system * Institute of Psychiatry using a GE 1.5T system
|
neuroimaging, structural mri assay, magnetic resonance angiography, nifti, t1, t2, pd, dti, demographic, normal, healthy, adult, mri, brain, image collection
|
is used by: NIF Data Federation
has parent organization: Imperial College London; London; United Kingdom
|
Normal, Healthy |
EPSRC GR/S21533/02 |
|
Acknowledgement requested |
|
nlx_149360 |
http://brain-development.org/ |
|
|
SCR_005839 |
SciCrunch Registry |
Information eXtraction from Images dataset |
2026-11-07 11:56:07 |
38 |
Human Phenotype Ontology
Resource Report
Resource Website
50+ mentions
|
Human Phenotype Ontology (RRID:SCR_006016)
|
HPO, HP
|
controlled vocabulary, data or information resource, ontology
|
Provides standardized vocabulary of phenotypic abnormalities encountered in human disease. Structured and controlled vocabulary for phenotypic features encountered in human hereditary and other disease. HPO is being developed in collaboration with members of OBO Foundry (Open Biological and Biomedical Ontologies), and logical definitions for HPO terms are being developed using PATO and a number of other ontologies including FMA, GO, ChEBI, and MPATH.
|
phenotype, genetics, disease, phenomizer, obo, clinical, phenome, pathological, organismal, FASEB list
|
uses: OMIM
uses: Phenexplorer
is used by: DisGeNET
is used by: HmtPhenome
is used by: MONARCH Initiative
is used by: NIF Data Federation
is listed by: BioPortal
is listed by: OBO
is related to: Phenexplorer
is related to: Phenomizer
is related to: PhenoTips
is related to: Neurocarta
is related to: GWASdb
is related to: Phenomizer
has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany
works with: Human Mouse Disease Connection
|
Monogenic disease, Hereditary disease |
|
PMID:20412080 |
Free, Freely available |
|
SCR_006219, nlx_151406, nlx_151835 |
http://purl.bioontology.org/ontology/HP, http://compbio.charite.de/svn/hpo/trunk/src/ontology/human-phenotype-ontology.obo |
|
|
SCR_006016 |
SciCrunch Registry |
Human Phenotype Ontology (HPO), Human Phenotype Ontology |
2026-11-07 11:55:47 |
76 |
Antibody Registry
Resource Report
Resource Website
100+ mentions
|
Antibody Registry (RRID:SCR_006397)
|
|
data or information resource, data repository, database, service resource, storage service resource
|
Public registry of antibodies with unique identifiers for commercial and non-commercial antibody reagents to give researchers a way to universally identify antibodies used in publications. The registry contains antibody product information organized according to genes, species, reagent types (antibodies, recombinant proteins, ELISA, siRNA, cDNA clones). Data is provided in many formats so that authors of biological papers, text mining tools and funding agencies can quickly and accurately identify the antibody reagents they and their colleagues used. The Antibody Registry allows any user to submit a new antibody or set of antibodies to the registry via a web form, or via a spreadsheet upload.
|
RIN, Resource Information Network, antibody, reagent, unique identifiers, RRID Community Authority,
|
is used by: Resource Identification Portal
is used by: NIF Data Federation
is used by: NIDDK Information Network (dkNET)
is listed by: OMICtools
is listed by: FORCE11
is listed by: re3data.org
is listed by: Resource Information Network
is related to: Novus Biologicals
is related to: DOMEO
is related to: Journal of Comparative Neurology Antibody database
is related to: Integrated Manually Extracted Annotation
has parent organization: Neuroscience Information Framework
|
|
NIDA ;
NIH Blueprint for Neuroscience Research ;
U.S. Department of Health and Human Services HHSN27120080035C |
|
Creative Commons Attribution License, The community can contribute to this resource |
|
biodbcore-000182, nif-0000-07730, OMICS_01768, r3d100010408 |
https://doi.org/10.17616/R3XG7N |
|
|
SCR_006397 |
SciCrunch Registry |
AntibodyRegistry, AB Registry, The Antibody Registry, ABRegistry |
2026-11-07 11:55:52 |
111 |
Clarity resources
Resource Report
Resource Website
10+ mentions
|
Clarity resources (RRID:SCR_001387)
|
CLARITY Resources
|
data or information resource, experimental protocol, narrative resource, training resource, video resource
|
Protocols and other training materials related to the CLARITY protocol, a technique for the transformation of intact tissue into a nanoporous hydrogel-hybridized form (crosslinked to a three-dimensional network of hydrophilic polymers) that is fully assembled but optically transparent and macromolecule-permeable.
|
workshop, protocol, specimen preparation, transparent brain, glass brain, brain, neuroimaging, phenotyping, tissue, brain tissue, cortex, hippocampus, thalamus, ventral, brainstem
|
is used by: NIF Data Federation
is used by: Integrated Videos
has parent organization: Stanford University; Stanford; California
|
|
NIMH 4R01MH099647-05 |
PMID:23575631 |
THIS RESOURCE IS NO LONGER IN SERVICE |
|
nlx_152559 |
|
|
|
SCR_001387 |
SciCrunch Registry |
Clarity resource |
2026-11-07 11:54:29 |
18 |
NIDDK Information Network (dkNET)
Resource Report
Resource Website
10+ mentions
|
NIDDK Information Network (dkNET) (RRID:SCR_001606)
|
dkNET
|
community building portal, data or information resource, database, portal
|
The NIDDK Information Network (dkNET) is a community-based network to serve needs of basic and clinical investigators that includes large pools of data and research resources relevant to mission of National Institute of Diabetes and Digestive and Kidney Disease.
|
dknet, data resource, diabetes, kidney, liver, disease, urology, hematology, digestive, nutrition, endocrine, obesity, metabolic
|
uses: NIDDK Central Repository
uses: Addgene
uses: NIF Data Federation
uses: Antibody Registry
uses: Nuclear Receptor Signaling Atlas
uses: GenitoUrinary Development Molecular Anatomy Project
uses: Diabetic Complications Consortium
uses: National Mouse Metabolic Phenotyping Centers
uses: T1DBase
uses: Beta Cell Biology Consortium
uses: Grants.gov
uses: dkNET Community Pilot Funding Opportunities
uses: Integrated Grants
uses: ClinicalTrials.gov
uses: Integrated Animals
uses: Intestinal Stem Cell Consortium
recommends: Biological General Repository for Interaction Datasets (BioGRID)
recommends: Cell Image Library (CIL)
recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D)
recommends: NIDDK Central Repository
recommends: Network Data Exchange (NDEx)
recommends: PeptideAtlas
recommends: International Mouse Phenotyping Consortium (IMPC)
recommends: FlyBase
recommends: Metabolomics Workbench
recommends: Zebrafish Information Network (ZFIN)
recommends: Mouse Genome Informatics (MGI)
recommends: Database of Interacting Proteins (DIP)
recommends: UniProt
recommends: PhysioNet
recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
recommends: ClinicalTrials.gov
recommends: dbVar
recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL)
recommends: WormBase
recommends: dbSNP
recommends: GenBank
recommends: DNA DataBank of Japan (DDBJ)
recommends: Database of Genomic Variants Archive (DGVa)
recommends: NCBI Sequence Read Archive (SRA)
recommends: MGnify
recommends: European Variation Archive (EVA)
recommends: European Nucleotide Archive (ENA)
recommends: Gene Expression Omnibus (GEO)
recommends: NCBI Assembly Archive Viewer
recommends: Protein Circular Dichroism Data Bank (PCDDB)
recommends: miRBase
recommends: Trace Archive
recommends: UniProtKB
recommends: Coherent X-Ray Imaging Data Bank (CXIDB)
recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI)
recommends: Worldwide Protein Data Bank (wwPDB)
recommends: Biological Magnetic Resonance Data Bank (BMRB)
recommends: Crystallography Open Database (COD)
recommends: PDBj - Protein Data Bank Japan
recommends: Inorganic Crystal Structure Database (ICSD)
recommends: Structural Biology Grid
recommends: NCBI database of Genotypes and Phenotypes (dbGap)
recommends: ArrayExpress
recommends: EMDataResource.org
recommends: Cambridge Crystallographic Data Centre (CCDC)
recommends: PDBe - Protein Data Bank in Europe
recommends: Japanese Genotype-phenotype Archive (JGA)
recommends: PubChem BioAssay
recommends: European Genome phenome Archive
recommends: GenomeRNAi
recommends: ProteomeXchange
recommends: MetaboLights
recommends: IntAct
recommends: FLOWRepository
recommends: Proteomics Identifications (PRIDE)
recommends: Global Proteome Machine Database (GPM DB)
recommends: Kinetic Models of Biological Systems (KiMoSys)
recommends: ChEMBL
recommends: Cancer Imaging Archive (TCIA)
recommends: Image Data Resource (IDR)
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lists: Vanderbilt Diabetes Research and Training Center Transgenic Mouse and ES Cell Shared Resource
lists: Vanderbilt Diabetes Research and Training Center Vanderbilt Diet Body Composition and Metabolism Core Facility
lists: Vanderbilt Digestive Disease Research Center Bioanalytical Mass Spectrometry and Proteomics Core
lists: Vanderbilt Digestive Disease Research Center Cellular Imaging Core
lists: Vanderbilt Digestive Disease Research Center Flow Cytometry Core
lists: Vanderbilt Digestive Disease Research Center
lists: University of Washington Nutrition and Obesity Research Center Adipose Tissue and Obesity Core
lists: University of Washington Nutrition and Obesity Research Center Administrative and Enrichment Core
lists: University of Washington Nutrition and Obesity Research Center Analytic Core
lists: University of Washington Nutrition and Obesity Research Center Energy Balance Core
lists: Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core
lists: University of Washington Nutrition and Obesity Research Center
lists: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core Facility
lists: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core Facility
lists: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core
lists: USC Liver Transplant Program and Center for Liver Disease Analytical Metabolic Instrumentation Core
lists: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core
lists: USC Liver Transplant Program and Center for Liver Disease Cell and Tissue Imaging Core
lists: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core
lists: Washington University Center for Diabetes Translation Research
lists: USC Liver Transplant Program and Center for Liver Disease Cell Separation and Culture Core
lists: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core
lists: Washington University Digestive Diseases Research Core Center Administrative and Resource Access Core
lists: USC Liver Transplant Program and Center for Liver Disease Liver Histology Core
lists: USC Liver Transplant Program and Center for Liver Disease
lists: Vanderbilt Center for Diabetes Translation Research Administrative Core
lists: Vanderbilt Center for Diabetes Translation Research Behavioral Intervention Technologies and Services Core
lists: Vanderbilt Center for Diabetes Translation Research Community Engagement Core
lists: Vanderbilt Center for Diabetes Translation Research Community Outreach and Heath Disparities Core
lists: Vanderbilt Center for Diabetes Translation Research
lists: Washington University Digestive Diseases Research Core Center Advanced Imaging and Tissue Analysis Core
lists: Vanderbilt Center for Diabetes Translation Research Translation Methods Core
lists: Washington University Digestive Diseases Research Core Center Biobank Core
lists: Yale Liver Center
lists: Washington University Digestive Diseases Research Core Center Murine Models and Gnotobiotics Core
lists: Yale Liver Center Morphology Core
lists: Washington University Digestive Diseases Research Core Center
lists: Yale Liver Center Clinical and Translational Core
lists: Washington University School of Medicine Diabetes Research Center Cell and Tissue Imaging Core
lists: Yale Liver Center Cellular and Molecular Physiology Core
lists: Washington University School of Medicine Diabetes Research Center Diabetes Models Phenotyping Core Facility
lists: Yale Liver Center Administrative Core
lists: Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core
lists: Yale Diabetes Research Center
lists: Washington University School of Medicine Diabetes Research Center Immunology of Type 1 Diabetes Core
lists: Yale Diabetes Research Center Physiology Core Facility
lists: Washington University School of Medicine Diabetes Research Center Mass Spectrometry Core
lists: Yale Diabetes Research Center Molecular Genetics Core
lists: Yale Diabetes Research Center Molecular Core Facility
lists: Washington University School of Medicine Diabetes Research Center Morphology and Metabolic Analysis Core
lists: Yale Diabetes Research Center Diabetes Translational Core Facility
lists: Washington University School of Medicine Diabetes Research Center
lists: Washington University School of Medicine Diabetes Research Center Transgenic and ES Cell Core
lists: Yale Diabetes Research Center Clinical Metabolism Core Facility
lists: Yale Diabetes Research Center Cell Biology Core Facility
lists: Washington University St. Louis Nutrition Obesity Research Center
lists: Yale Diabetes Research Center Administrative Core Facility
lists: Yale Cooperative Center of Excellence in Hematology Animal Modeling Core
lists: Yale Cooperative Center of Excellence in Hematology
lists: Yale Cooperative Center of Excellence in Hematology Cell Preparation and Analysis Core
lists: Yale Cooperative Center of Excellence in Hematology Imaging Core
lists: Harvard Digestive Disease Center
lists: Harvard Digestive Diseases Center Biomedical CORE B: Microscopy and Histopathology
lists: Harvard Digestive Diseases Center Biomedical CORE C: Epithelial Cell and Mucosal Immunology
lists: Harvard Digestive Diseases Center Biomedical CORE D: Gnotobiotic Mice, Microbiology and Metagenomics
lists: Harvard Digestive Diseases Center Clinical Translational Research Program
lists: Harvard Digestive Diseases Center Bio-Repository and Data Registry for Human Material
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Integrated Physiology Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Image Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Proteomics Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Translational Research Enhancement Core
lists: UCSF Liver Center
lists: UCSF Liver Center Cell Biology Core
lists: UCSF Liver Center Clinical & Translational Core
lists: UCSF Liver Center Immunology Core
lists: UCSF Liver Center Pathology & Imaging Core
lists: University of Chicago Digestive Diseases Research Core Center
lists: University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core
lists: University of Chicago Digestive Diseases Research Core Center Administrative Core
lists: University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core
lists: University of Chicago Digestive Diseases Research Core Center Host-Microbe Core
lists: University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core
lists: University of Michigan Center for Gastrointestinal Research
lists: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core
lists: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core
lists: University of Michigan Center for Gastrointestinal Research Molecular Biology Core
lists: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Advanced Analytics Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Biostatistics and Data Management Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Gnotobiotic Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Histology Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Large Animal Models Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Microbiome Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Molecular Pathology and Imaging Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Host-Microbial Analytic and Repository Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Genetically-Modified Mouse Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core
lists: Joslin Diabetes Center Molecular Phenotyping and Genotyping Core
lists: University of Pennsylvania Diabetes Research Center
lists: Preventing Early Renal Loss in Diabetes (PERL)
lists: Clinical Trials in Organ Transplantation in Children (CTOT-C)
lists: Clinical Trials in Organ Transplantation (CTOT)
lists: Stanford Diabetes Research Center
lists: Monogenic Diabetes Registry
lists: Chronic Prostatitis Collaborative Research Network Clinical Trial- Alfuzosin
lists: National Glycohemoglobin Standardization Program
lists: MetaCyto
lists: JOINSOLVER
lists: HASP
lists: NetCirChro
lists: Simmune
lists: ABC Bacterial Transporter Systems Database
lists: Kidney Precision Medicine Project
lists: ValIdated Systematic IntegratiON of epigenomic data
lists: The Human BioMolecular Atlas Program
lists: Prevention of Lower Urinary Tract Symptoms
lists: Illuminating the Druggable Genome
lists: 4D Nucleome
lists: immuneXpresso
lists: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain
lists: Secrepedia
lists: MoTrPAC Data Hub
lists: Human Cell Atlas
lists: PANC-DB
lists: Rare and Atypical Diabetes Network
lists: Diabetes Control and Complications Trial
lists: Diabetes Data and Hypothesis Hub
lists: Common Metabolic Diseases Knowledge Portal
lists: Type 1 Diabetes Knowledge Portal
lists: Sleep Disorder Knowledge Portal
lists: Cardiovascular Disease Knowledge Portal
lists: Cerebrovascular Disease Knowledge Portal
lists: Trans-Omics for Precision Medicine (TOPMed) Program
lists: All of Us
lists: AI-READI
is listed by: NIH Data Sharing Repositories
is listed by: NIDDK Research Resources
is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology
is related to: MTOPS Prostate Samples Analysis Consortium
is related to: Neuroscience Information Framework
is related to: Diabetes Disease Portal
is related to: Kidney and Urinary Pathway Knowledge Base
is related to: dbMHC
is related to: Islet Cell Resource Centers
is related to: DGAP
is related to: Nuclear Receptor Resource
is related to: dkCOIN
is related to: Human Biological Data Interchange
is related to: National Gene Vector Biorepository
is related to: Creatinine Standardization Program
is related to: Glomerular Filtration Rate Calculators
is related to: Congressionally Directed Medical Research Program
is related to: National Kidney Disease Education Program
is related to: Network of Minority Health Research Investigators
is related to: National Endocrine and Metabolic Diseases Information Service
is related to: Kidney and Urinary Pathway Ontology
is related to: National Diabetes Information Clearinghouse
is related to: Digestive Diseases Statistics for the United States
is related to: Diabetes in America
is related to: National Digestive Diseases Information Clearinghouse
is related to: Diabetes Control and Complications Trial
is related to: National Hematologic Diseases Information Service
is related to: National Kidney and Urologic Diseases Information Clearinghouse
is related to: Nonhuman Primate Transplantation Tolerance Cooperative Study Group
is related to: Type 1 Diabetes Preclinical Testing Program
is related to: Diabetes Autoantibody Standardization Program
is related to: AASK Clinical Trial and Cohort Study
is related to: Maryland Genetics of Interstitial Cystitis
is related to: Frequent Hemodialysis Network Nocturnal Trial
is related to: Mammalian Gene Collection
is related to: Zebrafish Gene Collection
is related to: Boston Area Community Health Survey
is related to: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia
is related to: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study
is related to: Complementary and Alternative Medicine for Urological Symptoms
is related to: Mouse Mutagenesis Center for Developmental Defects
is related to: CARDS Database
is related to: ACCORD
is related to: Program to Reduce Incontinence by Diet and Exercise
is related to: Renal Disease Portal
is related to: Renin Angiotensin System Study
is related to: NIH Data Sharing Repositories
is related to: Kidney Development Database
is related to: GenePaint Interactive Anatomy Atlas
is related to: EMAGE Gene Expression Database
is related to: Gene Expression Omnibus
is related to: MGnify
is related to: FAIR Data Informatics Laboratory
is related to: Type 1 Diabetes Knowledge Portal
is related to: Polycystic Kidney Disease Research Resource Consortium
has parent organization: SciCrunch
has parent organization: University of California at San Diego; California; USA
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Digestive disease, Kidney disease, Diabetes, Metabolic disease, Endocrine disease, Obesity, Urologic disease, Type 1 diabetes, Type 2 diabetes |
NIDDK U24 DK097771 |
PMID:26393351 |
Free, Freely available |
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nlx_153866, r3d100012845 |
http://scicrunch.org/dknet, https://doi.org/10.17616/R31NJMEL |
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SCR_001606 |
SciCrunch Registry |
National Institute of Diabetes and Digestive and Kidney Disease Information Network, NIDDK Information Network, DKnet, NIDDKInformation Network |
2026-11-07 11:54:22 |
21 |
NIF Web Services
Resource Report
Resource Website
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NIF Web Services (RRID:SCR_001631)
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NIF Web Services
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data access protocol, software resource, web service
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THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Representational State Transfer (REST) model based service for accessing a set of Neuroscience Information Framework (NIF) data through a fixed set of operations. They are defined by a WADL file which allows clients to automatically generate code for these services. The services (AnnotateService, FederationService, LdaService, LexicalService, LiteratureService, QueryService, SummaryService, VocabularyService) include the ability to: * Retrieve a federation summary, e.g., http://nif-services.neuinfo.org/servicesv1/v1/summary?q=* * Retrieve data records from a NIF federation source for a search, e.g., http://nif-services.neuinfo.org/servicesv1/v1/federation/data/nif-0000-00007-1?q=purkinje * Retrieve registry data records from NIF, e.g., http://nif-services.neuinfo.org/servicesv1/v1/federation/data/nlx_144509-1?q=miame * Retrieve a complete search summary, e.g., http://nif-services.neuinfo.org/servicesv1/v1/federation/search?q=cortex * Retrieve NIF auto-complete suggestions, e.g., http://nif-services.neuinfo.org/servicesv1/v1/vocabulary?prefix=hippo * Use the NIF annotator for arbitrary text, e.g., http://nif-services.neuinfo.org/servicesv1/v1/annotate?content=The%20cerebellum%20is%20a%20wonderful%20thing These services are documented for developers in the WADL file (and client stubs should have the comments embedded in them). Visit, http://nif-services.neuinfo.org/servicesv1/ for more information
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rest, data sharing, wadl
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is used by: NIF Data Federation
is related to: SciCrunch Registry
is related to: NIF Literature
is related to: OntoQuest
has parent organization: Neuroscience Information Framework
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THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_153899 |
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SCR_001631 |
SciCrunch Registry |
Neuroscience Information Framework Web Services |
2026-11-07 11:54:22 |
0 |
