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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
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Merial/NIH Veterinary Scholars Program Resource Report Resource Website 1+ mentions |
Merial/NIH Veterinary Scholars Program (RRID:SCR_008301) | postdoctoral program resource, training resource | The aim of the Summer Scholars Program is to provide veterinary medical students the opportunity to explore the world of biomedical research, develop and complete a biomedical research project during the summer. The intent is to engage students in a creative, problem-solving research activity and to provide a learning experience that will lead to the discovery of new knowledge in an area of their choosing and identify potential pathways to a career in biomedical research. Research plans will be developed by students with faculty mentor input, on any topic of interest to the student and likely to lead to the discovery of new information. Example topics are: immunology and infectious diseases, cancer biology, molecular epidemiology, experimental studies focused on nutrition and obesity, pharmacology, environmental toxicology, mechanisms of pathogenesis, zoonoses, biomechanics, cardiovascular pathophysiology, and others. The mentor and other advisors will provide guidance to students and an assessment of progress. Students will provide at completion of the study, an oral presentation of their results to their colleagues and all mentors and a presentation of results via posters at the annual Merial NIH National Veterinary Scholars Symposium, to be held in 2010 at the University of Georgia, and at the LSU Phi Zeta Research Emphasis Day. It is noteworthy that one Summer Scholar won an award at the 2008 LSU Phi Zeta Research Emphasis Day. LSU Students will receive elective credit in the curriculum (VMED 5010 or VMED 5463) for successful completion of the program. Students will be strongly encouraged to work with their mentors to publish their findings in peer-reviewed journals separately or as a smaller piece of work with their mentors. Sponsors: The program is funded by a Merial Foundation grant and an NIH T35 training grant. | environmental, epidemiology, experment, biology, biomechanics, biomedical, cancer, cardiovascular, disease, immunology, infectious, mechanism, medical, molecular, nutrition, obesity, pathogenesis, pathophysiology, pharmacology, program, research, summer, toxicology, veterinary, zoonoses | has parent organization: Louisiana State University; Louisiana; USA | nif-0000-24388 | SCR_008301 | Merial/NIH Veterinary Scholars Program | 2026-08-10 09:33:28 | 2 | |||||||||
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Comparative Biomedical Sciences Graduate Program Resource Report Resource Website 1+ mentions |
Comparative Biomedical Sciences Graduate Program (RRID:SCR_008304) | postdoctoral program resource, training resource | The Comparative Biomedical Sciences Graduate Degree program provides exceptional graduate research training in core areas of animal and human health including genomics, immunology, molecular and cellular biology, physiology, infectious disease, neuroscience, pharmacology and toxicology, and oncology. Seventy-five faculty members in a diverse number of UW departments including Bacteriology, Biochemistry, Medical Microbiology and Immunology, Medicine, Oncology, Pathology, Radiology in addition to the 4 departments of the School of Veterinary Medicine are trainers in the program. These internationally recognized professors, as well as the integrative nature of our program, provide outstanding and unique research opportunities for our students. Because the University of Wisconsin is consistently ranked as one of the best 10 graduate institutions in the nation, the strength of our program is not only due to the superb research and teaching of our faculty but also due to the University as a whole. Approximately 55 students, most of whom are Ph.D. candidates, are currently enrolled in the program. Research strategies and academic curricula are tailored to the specific needs of each individual student. Graduates from our program are highly successful in the biotechnology industry and at top-ranked research institutions in the U.S. and abroad. The Comparative Biomedical Sciences Graduate Program offers a diverse number of research opportunities in multiple fields of study. A brief description of some of the major areas of research being performed by faculty affiliated with the Comparative Biomedical Sciences Graduate Program is provided below. Use the pull down menu above or click on the heading to find faculty members doing research in these areas. Sponsors: CBMS is supported by the University of Wisconsin | animal, biology, biomedical, cellular, comparative, disease, genomic, health, human, immunology, infectious, medicine, microbiology, molecular, neuroscience, oncology, pharmacology, physiology, radiology, science, toxicology | has parent organization: University of Wisconsin-Madison; Wisconsin; USA | nif-0000-24383 | http://www.vetmed.wisc.edu/pbs/gradprogram/index.shtml | SCR_008304 | CBMS | 2026-08-10 09:33:27 | 2 | ||||||||
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Google Code Resource Report Resource Website 100+ mentions |
Google Code (RRID:SCR_005786) | Google Code | software repository, software resource | Developer tools, APIs and resources. Search developers.google.com and code.google.com. | code, developer |
lists: Emotion Ontology lists: Porifera Ontology lists: Information Artifact Ontology lists: Mental Functioning Ontology lists: Beta Cell Genomics Ontology lists: Biological Collections Ontology lists: Chemical Methods Ontology lists: Chemical Information Ontology lists: Ontology for Genetic Interval lists: Ontology for Parasite LifeCycle lists: Ontology of Medically Related Social Entities lists: Population and Community Ontology lists: RNA Ontology lists: Vertebrate Taxonomy Ontology lists: Adverse Event Reporting Ontology lists: Neurobehavior Ontology lists: Ontology for General Medical Science lists: GHOSTM lists: nFuse lists: PD5 is parent organization of: GUARDD is parent organization of: APSampler is parent organization of: Cbrowse is parent organization of: SNAVI is parent organization of: TAPS is parent organization of: PyroHMMsnp is parent organization of: d2-tools is parent organization of: msbwt is parent organization of: DySC is parent organization of: BAMseek is parent organization of: GlycoWorkbench is parent organization of: Google Project Hosting is parent organization of: jmzIdentML API is parent organization of: jmzML is parent organization of: GenomicTools is parent organization of: tbrowse is parent organization of: PyroHMMvar is parent organization of: FR-HIT is parent organization of: PeptideShaker is parent organization of: ms lims is parent organization of: Gel2DE is parent organization of: ProRata is parent organization of: MoSDi is parent organization of: Gutentag is parent organization of: SASqPCR is parent organization of: MPprimer is parent organization of: BioCaster Ontology is parent organization of: PoPoolation2 is parent organization of: BMIQ is parent organization of: FadE is parent organization of: Bpipe is parent organization of: Snakemake is parent organization of: SNAPE-pooled is parent organization of: jmzTab is parent organization of: PoPoolation is parent organization of: PerM is parent organization of: tree editor is parent organization of: deStruct is parent organization of: PoPoolation TE is parent organization of: methylKit is parent organization of: SNPdat is parent organization of: CLEVER Toolkit is parent organization of: Clippers is parent organization of: Hydra is parent organization of: MiRPara is parent organization of: phantompeakqualtools is parent organization of: Knime4Bio is parent organization of: Bisulfighter is parent organization of: MOSAIK is parent organization of: SeqTrace is parent organization of: jMHC is parent organization of: BSMAP is parent organization of: PePr is parent organization of: SAAP-RRBS is parent organization of: SoftSearch is parent organization of: Autopack is parent organization of: CROP is parent organization of: eDMR is parent organization of: swDMR is parent organization of: peakrots is parent organization of: AmpliconNoise is parent organization of: HighSSR is parent organization of: ComB is parent organization of: Diplotyper is parent organization of: draw-sneakpeek is parent organization of: MutFinder is parent organization of: reseqtools is parent organization of: breseq is parent organization of: CNValidator is parent organization of: RRBSMAP is parent organization of: B-SOLANA is parent organization of: BatMeth is parent organization of: balony is parent organization of: ngs.plot is parent organization of: discovering-cse is parent organization of: SeqPipe is parent organization of: RseqFlow is parent organization of: orthAgogue is parent organization of: Gene ARMADA is parent organization of: MetExtract is parent organization of: jmzReader is parent organization of: PRIDE Converter 2 is parent organization of: Pride-asap is parent organization of: thermo-msf-parser is parent organization of: SearchGUI is parent organization of: XTandem Parser is parent organization of: Bpredictor is parent organization of: MOABS is parent organization of: CAMPways is parent organization of: compomics-utilities is parent organization of: DeNovoGUI is parent organization of: ProteoCloud is parent organization of: kruX is parent organization of: SlideSort-BPR is parent organization of: SPINAL is parent organization of: PSimScan is parent organization of: NetCoffee is parent organization of: CONDEX is parent organization of: ChiBE is parent organization of: Allim is parent organization of: Cell motility is parent organization of: GlycReSoft is parent organization of: GlycanBuilder is parent organization of: npstat is parent organization of: PoolHap is parent organization of: REDItools is parent organization of: iceLogo is parent organization of: AMS is parent organization of: MP-EST is parent organization of: HLAforest is parent organization of: LocalAli is parent organization of: genCAT is parent organization of: ECO is parent organization of: SobekCM is parent organization of: SimRare is parent organization of: PhenoMan is parent organization of: DistMap is parent organization of: PIPE-CLIP is parent organization of: CD-HIT is parent organization of: eagle-i research resource ontology is parent organization of: Neuropsychological testing ontology is parent organization of: Neurological disease ontology hosts: GenomeSmasher |
nlx_149265 | SCR_005786 | 2026-08-10 09:32:39 | 452 | |||||||||
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TherMos Resource Report Resource Website 100+ mentions |
TherMos (RRID:SCR_002790) | algorithm resource, software resource | Software used for estimating protein-DNA binding energies from in vivo binding profiles. It is a de novo motif discovery algorithm that exploits the information in transcription factor ChIP-seq or ChIP-exo datasets based on a more natural thermodynamic formalism., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | protein dna binding energy, in vivo binding profiles, motif discovery |
uses: MATLAB is listed by: OMICtools |
PMID:23595148 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00498 | SCR_002790 | 2026-08-10 09:31:50 | 208 | ||||||||
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Academic Seismic Portal at UTIG Resource Report Resource Website |
Academic Seismic Portal at UTIG (RRID:SCR_000403) | ASP at UTIG, ASP_UTIG | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 1, 2023. Database of processed seismic reflection / refraction data providing access to metadata, SEG-Y files, navigation files, seismic profile images, processing histories and more. The main features of the web site include a geographic search engine using Google Plugins, a metadata search engine, and metadata pages for the various seismic programs. Metadata are uploaded into mySQL, a public-domain SQL server, and then PHP scripts query the metadata and directories, creating web pages, displaying images, and providing ftp links. | seismic, metadata, image, reflection, refraction, marine geology, geophysics |
is listed by: re3data.org is listed by: CINERGI is related to: Academic Seismic Portal at LDEO has parent organization: University of Texas at Austin; Texas; USA |
NSF | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154745, r3d100010631 | https://doi.org/10.17616/R3CP6C | SCR_000403 | Academic Seismic Portal (ASP) at UTIG | 2026-08-10 09:31:09 | 0 | |||||
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Polygenic Score Catalog Resource Report Resource Website 100+ mentions |
Polygenic Score Catalog (RRID:SCR_023558) | data or information resource, database | Open database of polygenic scores and relevant metadata required for accurate application and evaluation. Used for reproducibility and systematic evaluation. | polygenic scores and relevant metadata, reproducibility and systematic evaluation, | UK Medical Research Council ; British Heart Foundation ; National Institute for Health Research ; Health Data Research UK ; Munz Chair of Cardiovascular Prediction and Prevention ; NHGRI U41HG007823; European Molecular Biology Laboratory ; Canadian Institutes of Health Research postdoctoral fellowship |
PMID:33692568 | Free, Freely available, | SCR_023558 | The Polygenic Score (PGS) Catalog | 2026-08-10 09:37:24 | 139 | ||||||||
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Coastal Data Information Program Resource Report Resource Website 10+ mentions |
Coastal Data Information Program (RRID:SCR_024649) | CDIP | data or information resource, database | Network for monitoring waves and beaches and prediction of waves and shoreline change along coastlines of United States. Since 1975 program has produced database of publicly accessible environmental data for use by coastal engineers and planners, scientists, mariners, and marine enthusiasts. Forefront of coastal monitoring, developing numerous innovations in instrumentation, system control and management, computer hardware and software, field equipment, and installation techniques. Operated by Ocean Engineering Research Group, part of Integrative Oceanography Division at Scripps Institution of Oceanography. CDIP measures, analyzes, archives and disseminates coastal environment data for use by coastal engineers, planners and managers, as well as scientists and mariners. | monitoring waves and beaches, prediction of waves and shoreline change, environmental data, |
is listed by: DataCite has parent organization: University of California; California; USA |
Free, Freely available | r3d100000020 | https://api.datacite.org/dois?prefix=10.18437 | SCR_024649 | UCSD CDIP | 2026-08-10 09:37:40 | 18 | ||||||
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OncoboxPD Resource Report Resource Website 1+ mentions |
OncoboxPD (RRID:SCR_023723) | data or information resource, database | Structured curated collection of protein based and of metabolic human molecular pathways. Human molecular pathways database with tools for activity calculating and visualization.All pathways are functionally classified according to GO terms enrichment patterns. All pathway participants, their interactions and reactions are uniformly processed and annotated, and are ready for numeric analysis of experimental expression data.For every comparison graph is generated summarizing top up and down regulated pathways. | Gene Ontology terms enrichment patterns, human molecular pathways, curated collection, GO terms enrichment patterns, experimental expression data analysis, |
is related to: oncoboxlib is related to: Gene Ontology |
Russian Science Foundation ; National Natural Science Foundation of China ; Qingdao Key Research Project ; Qingdao Key Health Discipline Development Fund |
PMID:35615022 | Free, Freely available | SCR_023723 | Oncobox Pathway Databank | 2026-08-10 09:37:26 | 8 | |||||||
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Kinase Associated Neural Phospho Signaling Resource Report Resource Website 1+ mentions |
Kinase Associated Neural Phospho Signaling (RRID:SCR_023659) | KANPHOS | data or information resource, database | Database system that provides phosphorylated sites and information about which substrates are phosphorylated by specific kinase and which extracellular stimuli activate or inhibit protein phosphorylation via intracellular signaling cascades. | Fujita Health University, Toyoake, Japan, phosphorylated sites, substrates, phosphorylation, kinase, protein phosphorylation, intracellular signaling cascades, |
works with: Allen Brain Atlas works with: HuGE Navigator - Human Genome Epidemiology Navigator works with: UniProtKB |
Free, Freely available | SCR_023659 | 2026-08-10 09:37:25 | 1 | |||||||||
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Efficient Mixed-Model Association Resource Report Resource Website 50+ mentions |
Efficient Mixed-Model Association (RRID:SCR_008217) | EMMA | algorithm resource, software resource | Statistical test for model organisms association mapping correcting for the confounding from population structure and genetic relatedness. EMMA takes advantage of the specific nature of the optimization problem in applying mixed models for association mapping, which substantially increases the computational speed and the reliability of the results. The current implementation of EMMA is available in an R package. The documentation is included in the installation package. | algorithm, organism statistical model, association mapping, r package |
is listed by: 3DVC has parent organization: University of California at Los Angeles; California; USA |
PMID:18385116 | Available for download | nif-0000-21753 | SCR_008217 | Efficient Mixed-Model Association (EMMA), Efficient Mixed Model Association | 2026-08-10 09:33:26 | 59 | ||||||
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Postdoctoral Program for Veterinarians Resource Report Resource Website |
Postdoctoral Program for Veterinarians (RRID:SCR_008296) | postdoctoral program resource, training resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on January 27,2022.This program helps address the shortage of veterinarians who are trained for independent research. It supports veterinarians during the first 3 years of their PhD training. Trainees can participate in any graduate program involved in biomedical research at Stanford University: Biochemistry, Biological Sciences, Biophysics, Cancer Biology, Developmental Biology, Genetics, Immunology, Microbiology & Immunology, Molecular & Cellular Physiology, Molecular Pharmacology, Neurosciences, Structural Biology, Bioengineering, and Biomedical Informatics (graduate programs in biomedical research). All share common features: :1. Year 1 focuses on a limited group of courses and laboratory rotations. :2. Subsequent years focus on developing critical thinking via seminars and journal clubs and on independent research. :3. Annual retreats to present and learn about ongoing research in the graduate program. :4. Emphasis on mastering communications skills essential for success in science: oral presentation, writing manuscripts and grant proposals. :5. Developing an appreciation of the role of scientists in the context of society with emphasis on ethical and professional responsibility. Sponsors: It is funded by a T32 training grant from the NIH. | genetics, biochemistry, bioengineering, biological science, biology, biomedical, biophysics, cancer, cellular, developmental, immunology, informatic, microbiology, molecular, neuroscience, pharmacology, physiology, research, structural, training, veterinarian | has parent organization: Stanford University; Stanford; California | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-24377 | SCR_008296 | Postdoctoral Program for Veterinarians | 2026-08-10 09:33:27 | 0 | ||||||||
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OpenBioinformatics.org Resource Report Resource Website 10+ mentions |
OpenBioinformatics.org (RRID:SCR_002229) | OpenBioinformatics.org | software repository, software resource | An open bioinformatis software repository with no tie to any organization or institution. Contact them to host your software. | bioinformatics, software |
is related to: PennCNV is parent organization of: ANNOVAR is parent organization of: GenGen |
Free, Available for download, Freely available | nlx_155524 | SCR_002229 | OpenBioinformatics.org: An open bioinformatis software repository | 2026-08-10 09:31:40 | 11 | |||||||
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UltraMegaSort 2000 Resource Report Resource Website 10+ mentions |
UltraMegaSort 2000 (RRID:SCR_015857) | algorithm resource, software resource | Matlab-based routines for the detection and clustering of putative single units from a multi-unit time series, along with quality metrics. This sofwtare was developed by the David Kleinfeld Laboratory at UC San Diego. | matlab, detection, clustering, putative single unit, multi-unit time series, metric data | is used by: MATLAB | NINDS NS051177; NINDS FNS054393A; US-Israeli Binational Science Foundation 2007121 |
PMID:21677152 | Free, Available for download | SCR_015857 | UltraMegaSort | 2026-08-10 09:35:33 | 13 | |||||||
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COMPASS Resource Report Resource Website 500+ mentions |
COMPASS (RRID:SCR_015874) | algorithm resource, software resource | Algorithm for MATLAB and the EEGLAB toolbox that enables the automatic detection of independent components from an ICA that represent event-related brain potentials. It performs automatic Independent Component (IC) selection with respect to the contributions of the ICs to a certain ERP. | matlab, eeglab, independent component, ica, erp, event-related potential |
is used by: MATLAB requires: MATLAB |
Gertrud Reemtsma Foundation for Brain Research | PMID:20965258 | Free, Available for download | http://53450283.de.strato-hosting.eu/jrw/lab/e_compass.htm | SCR_015874 | ICACOMPASS | 2026-08-10 09:35:28 | 844 | ||||||
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Epigenetic Pacemaker Resource Report Resource Website |
Epigenetic Pacemaker (RRID:SCR_018158) | EPM | algorithm resource, software resource | Python implementation of conditional expectation maximization algorithm that estimates epigenetic landscapes and state of individuals and may be used to study nonlinear epigenetic aging. Fast conditional expectation maximization algorithm used to model epigenetic states associated with phenotype of interest. Can model non linear epigenetic trait associations directly without transformation of phenotype of interest. | DNA methylation, epigenetic, aging genes, phenotype | Free, Available for download, Freely available | https://pypi.org/project/EpigeneticPacemaker/ | SCR_018158 | Epigenetic Pacemaker | 2026-08-10 09:36:11 | 0 | ||||||||
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GPS Resource Report Resource Website 50+ mentions |
GPS (RRID:SCR_016374) | GPS | algorithm resource, software resource | Software that detects kinase-specific phosphorylation sites. GPS provides a platform able to perform its prediction based on a group-based phosphorylation scoring algorithm. It allows users to query multiple protein sequences through a batch prediction mode. | phosphorylate, protein, seq, predictive, substrate, site, kinase, mass spectrometry | PMID:18463090 | Free for academic use, Request for commercial use, Available for download | SCR_016374 | Group-based Prediction System, GPS: Group-based Prediction System, Group-based Prediction System (GPS) | 2026-08-10 09:35:39 | 69 | ||||||||
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LEfSe Resource Report Resource Website 5000+ mentions |
LEfSe (RRID:SCR_014609) | algorithm resource, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 28,2023. Algorithm for high-dimensional biomarker discovery and explanation that identifies genes, pathways, or taxa characterizing the differences between two or more biological conditions. The algorithm identifies features that are statistically different among biological classes, then performs additional tests to assess whether these differences are consistent with respect to expected biological behavior. Statistical significance and biological relevance are emphasized., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | microbiome, algorithm, biomarker, genomic feature, web application |
is listed by: Human Microbiome Project is listed by: Debian is listed by: OMICtools |
DOI:10.1186/gb-2011-12-6-r60 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_07818 | https://sources.debian.org/src/lefse/ | SCR_014609 | LDA Effect Size | 2026-08-10 09:35:08 | 7242 | ||||||
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OpenBehavior Resource Report Resource Website 1+ mentions |
OpenBehavior (RRID:SCR_015938) | OB | software repository, software resource | Repository of open source tools for behavioral neuroscience research. OpenBehavior features hardware (tools, devices, apparatuses), as well as software for data acquisition and analysis and for the investigation of animal behavior and cognition. Dedicated to accelerating research through promotion of collaboration and open source projects. | software, data, hardware, animal, behavior, cognition, cognitive, analysis, processing |
lists: Feeding Experimentation Device project lists: Bpod lists: SLEAP, LEAP and MotionMapper project lists: Social LEAP lists: MotionMapper lists: Behavioral Segmentation of Open-field in DeepLabCut project lists: DeepBehavior project lists: BonZeb project lists: D-Track project lists: Online Animal Tracker project lists: Locomouse project lists: openEyeTrack project lists: DeepPoseKit project lists: DeepFly3D project lists: neurotic project lists: Rodent Arena Tracker project lists: Open Source Whisking Video Database portal lists: Simple Behavior Analysis project lists: OpenMonkeyStudio project lists: FaceSync project lists: Online Animal Tracker lists: DeepBehavior lists: BonZeb lists: Behavioral Segmentation of Open-field in DeepLabCut lists: FaceSync lists: LocoMouse lists: DeepPoseKit lists: openEyeTrack lists: D-Track lists: Simple Behavior Analysis lists: DeepFly3D lists: Open Source Whisking Video Database lists: neurotic lists: Low Cost Open Source Eye Tracking project lists: Stytra project lists: Calcium ActiVity Explorer project lists: idtracker.ai project lists: Live Mouse Tracker project lists: ToxTrac project lists: Picamera project lists: EthoScopes project lists: Worm Behavior Platform project lists: KineMouse Wheel project lists: Mousecam project lists: M-Track project lists: ezTrack project lists: FaceMap project lists: Head-Fixed Setup for Combined Behavior, Electrophysiology, and Optogenetics project lists: ZebraTrack project lists: LocoWhisk project lists: EthoWatcher project lists: Skinner Box project lists: Behavioral Observation Research Interactive Software project lists: Pyper project lists: Automated Rodent Tracker project lists: LinCoM project lists: Bonsai project lists: Quantifying Animal Movement from Pre-recorded Videos project lists: Platform for Acoustic STArtle project lists: Joystick project lists: 3DTracker project lists: AutoPilot project lists: PiDose project lists: DeepSqueak project lists: Rigbox project lists: Catalepsy Bar project lists: Dual port Lick Detector project lists: Pathfinder project lists: Actifield project lists: Rodent Activity Detector project lists: flyPAD project lists: Automated Home Cage Rodent Two bottle Choice Test project lists: MedParse project lists: Voluntary Access Static Incapacitance Chamber project lists: Laubach Lab GitHub Repository project lists: BPM Biosignals project lists: Automated mouse homecage two bottle choice test project lists: Mousetrap project lists: Autoreward2 project lists: Optimouse project lists: Hao Chen Lab Repository project lists: AutonoMouse project lists: Spike Forest project lists: Closed Loop System project lists: ArduiPod Box project lists: Oculomatic Eye Tracking project lists: Ultrasonic Vocalizations Detector project lists: Attys project lists: Calcium Imaging data Analysis project lists: Feldman Lab Lickometer project lists: MNE Scan project lists: Open Source platform for Sensory Tasks project lists: Scintillate project lists: Pypreclin project lists: Wave Surfer project lists: An open source motorized swivel for in vivo neural and behavioral recordings project lists: Toolboxes for Spike and LFP Analysis project lists: BrainGlobe project lists: UCLA Miniscope project lists: Cerebro Wireless Optogenetic System project lists: Home Cage Automated Skilled Reaching Apparatus project lists: Open-tES project lists: Capactive Touch Sensor project lists: CapTouch project lists: Two Armed Bandit Task project lists: Novel Gustometer for Human Taste Research project lists: OpenVape project lists: Calcium ActiVity Explorer lists: Pi Virtual Reality System project lists: BonVision project lists: FinchScope project lists: Mousecam lists: ezTrack lists: DIY-NAMIC project lists: Precision Syringe Pump Controller project lists: idtracker.ai lists: Stytra lists: EthoScopes lists: Worm Behavior Platform lists: Ardbark project lists: FaceMap lists: M-Track lists: ToxTrac lists: Pyper lists: Low Cost Open Source Eye Tracking lists: Automated Rodent Tracker lists: Live Mouse Tracker analysis lists: LinCoM lists: Skinner Box lists: 3DTracker lists: Pathfinder lists: Behavioral Observation Research Interactive Software lists: MNE Scan lists: Quantifying Animal Movement from Pre-recorded Videos lists: Rigbox lists: Platform for Acoustic STArtle lists: DeepSqueak lists: Oculomatic lists: Wave Surfer lists: EthoWatcher lists: MedParse lists: Bonsai lists: Scintillate lists: AutoPilot lists: Spike Forest lists: flyPAD lists: Optimouse lists: Calcium Imaging data Analysis lists: BonVision lists: Dual Port Lick Detector lists: Pypreclin lists: ACRoBaT lists: Visual stimulator with customizable light spectra lists: ToneBox lists: 3DOC lists: MouseBytes lists: Touchscreen Cognition lists: FreemoVR project lists: Modular Automated Platform for Large Scale Experiments project lists: OpenFeeder lists: SnackClock lists: SignalBuddy lists: ArControl project lists: Airtrack lists: Teensy-Based Interface project lists: Autonomous Training of a Forelimb Motor Task project lists: Ratcave project lists: DIY Rodent Running Disk lists: Moving Wall Box lists: Operant Box for Auditory Tasks project lists: Camera Control project lists: FlyPi lists: CerebraLux lists: Automated Home-Cage Functional Imaging project lists: Pearce Lab Syringe Pump project lists: Craniobot project lists: PhotometryBox lists: Pulse Pal project lists: NINscope lists: Nose Poke Device lists: pyControl project lists: OpenMV project lists: Rodent Operant Bucket project lists: Tetroplater lists: OpenSpritzer lists: Argus lists: NeRD lists: PRiED lists: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology project lists: MouseMove project lists: Eco-HAB lists: Homecage Task Training and Mesoscale Imaging project lists: Microwave based Homecage Motion Detector project lists: CHEndoscope lists: Robotic Flower System for Bee Behavior project lists: TRIO Platform lists: A Head Mounted Multi Camera System for Freely Moving Mice project lists: Ratcave lists: 4 Port Nose Poke lists: An Opensource lickometer and microstructure analysis program lists: Automated Classification of Self-grooming in Mice project lists: FreemoVR lists: ArControl lists: Visual Discrimination with an iPad lists: Teensy-Based Interface lists: Operant Box for Auditory Tasks lists: Autonomous Training of a Forelimb Motor Task lists: 3D Printed Headcap and Microdrive lists: poke device arduino lists: MouseBytes lists: Hybrid-drive combining Optogenetics, Pharmacology, and Electrophysiology lists: Rodent Operant Bucket lists: Camera Control lists: linear actuator lists: Modular Automated Platform for Large Scale Experiments lists: pyControl lists: Argus lists: NINscope software lists: OpenMV lists: MouseMove lists: chendoscope lists: craniobot lists: Pulse Pal lists: Automated Home-Cage Functional Imaging lists: AutoHeadFix lists: SpikeGadgets lists: Open Ephys lists: MRI-stereoscope project lists: AutomaticSleepScoringTool lists: Pi-based Remote Acquisition Technology for Motion Capture project lists: Pi-based Remote Acquisition Technology for Motion Capture lists: Brainrender lists: TetrODrive lists: COMPASS lists: Cellpose lists: OORTT lists: DBscorer lists: GazeMetrics lists: AutoStereota lists: FlyBrainLab lists: pyOS-5 project lists: Pyneal lists: pyOS-5 lists: Atlas Based Analysis lists: VocalMat lists: DABEST lists: Raspberry Pi based auditory stimulus generator lists: Pain Assessment at Withdrawal Speeds lists: Florida research open source synchronization tool lists: Permuco lists: LED Matrix Stimuli lists: Mouse Action Recognition System lists: Behavior Ensemble and Neural Trajectory Observatory lists: Neonatal Stereotaxic Mouse Adaptor lists: MARS Developer lists: EZcalcium lists: MRI Compatible Microdrive lists: GuPPy lists: DeepEthogram lists: Pycro Manager lists: DeepBhvTracking lists: TweetyNet lists: OpenPose lists: TRex lists: SIPEC lists: Closed Loop Automated Reaching Apparatus lists: Timed pressure control hardware and software for delivery of air mediated distensions in animal models lists: CellExplorer lists: DLStream lists: SipperViz lists: Variational Embedding of Animal Motion lists: SHARCQ lists: PavCA project lists: GoFish Ajuwon etal 2022 lists: LED Zappelin’ lists: Minian lists: Modular LED Displays project lists: OpenSync lists: USVCAM lists: Histological E data Registration in rodent Brain Spaces lists: Pi USB Cam project lists: 3D Printed Superfusion Chamber lists: pyPhotometry lists: Rtrack lists: ColonyTrack lists: Anipose lists: LiftPose3D lists: DANNCE lists: DeepLabCut Project lists: ACTman lists: Raspberry Pi Grating lists: Falcon lists: OpBox lists: Mouse Behavioral Analysis Toolbox lists: Pynapple lists: Wheel Running Activity acQuisition lists: CaT-z lists: M3 Platform lists: Automated 2 Photon Imaging Compatible Platform for Assessing Working Memory lists: Rasberry rat lists: RodentJoystick lists: tmilltracker lists: 3D Printed Multi Pump System lists: BehaviorDEPOT lists: Open Face Homecage Running Wheel lists: RatHeadphones lists: RatInABox lists: LabNet lists: JAX Animal Behavior System lists: AnimalTA lists: Mousebytes lists: Lick Instance Quantifier Home cage Device lists: B-CALM lists: Freibox lists: commutator lists: Customized Guide Cannulas lists: BrainWAVE lists: Brainways lists: LFP Monitoring lists: PyMouseTracks lists: Lightning Pose lists: Customizable Multielectrode Array lists: Live Mouse Tracker Toolkit Analysis lists: HFOApp lists: Synaptic Vesicles Detection lists: Pipette Finding CNN lists: 3DP Gustometer lists: SEB3R lists: Lickometer Box lists: Custom-fitting-of-implants lists: Markerless Mouse Tracking for Social Experiments lists: FARESHARE lists: HERBs lists: E-Scope lists: PyBehave lists: ReachOut lists: One-rat Turnstile lists: TD_Drive lists: Holeboard lists: SaLSa lists: ghostipy lists: DREAM implant lists: HSSM lists: High-Precision Optical Fiber-Based Lickometer lists: NC4gate lists: ArUco lists: STPoseNet lists: Bell Jar lists: Implant for Reliable Diaphragm EMG Recordings in Awake, Behaving Rats lists: Active Commutator |
Public | SCR_015938 | 2026-08-10 09:35:34 | 5 | |||||||||
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Boruta Resource Report Resource Website 10+ mentions |
Boruta (RRID:SCR_016234) | algorithm resource, software resource | Algorithm that performs feature selection. It finds relevant features by comparing original attributes' importance with importance achievable at random, estimated using their permuted copies (shadows). | feature, selection, algorithm, wrapper, estimation, shadow, copy | uses: R Project for Statistical Computing | Free, Available to download | https://mbq.github.io/Boruta/ | SCR_016234 | Boruta algorithm, Boruta: Wrapper Algorithm for All Relevant Feature Selection | 2026-08-10 09:35:36 | 11 | ||||||||
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code.gov Resource Report Resource Website |
code.gov (RRID:SCR_017601) | software repository, software resource | Code repository for all government funded software. Designed to support reuse and public access to custom developed Federal source code. It requires new custom developed source code developed specifically by or for Federal Government to be made available for sharing and re-use across all Federal agencies. Provides tools to help government and public collaborate on open source projects. | Repository, government, funded, source, code, federal, government, sharing, public, collabortae, reuse | Restricted | https://github.com/GSA/code-gov-front-end | SCR_017601 | 2026-08-10 09:35:58 | 0 |
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