sleuth
Resource Report
Resource Website
10+ mentions
|
sleuth (RRID:SCR_016883)
|
|
data processing software, software application, software resource, data analysis software
|
Software tool for analysis of RNA-Seq experiments for which transcript abundances have been quantified with kallisto. Used for the differential analysis of gene expression data that utilizes bootstrapping in conjunction with response error linear modeling to decouple biological variance from inferential variance.
|
differential, analysis, RNA-Seq, data, gene, expression, bootstrapping, error, linear, modeling, decouple, biological, variance, inferential, bio.tools
|
is listed by: Debian
is listed by: bio.tools
works with: kallisto
|
|
NIDDK R01 DK094699;
NHGRI R01 HG006129 |
PMID:28581496 |
Free, Available for download, Freely available |
|
biotools:sleuth, BioTools:sleuth |
https://bio.tools/sleuth, https://bio.tools/sleuth, https://bio.tools/sleuth |
|
|
SCR_016883 |
|
2026-08-04 09:44:00 |
24 |
ValIdated Systematic IntegratiON of epigenomic data
Resource Report
Resource Website
1+ mentions
|
ValIdated Systematic IntegratiON of epigenomic data (RRID:SCR_016921)
|
VISION
|
portal, catalog, project portal, database, data or information resource
|
International project to analyze mouse and human hematopoiesis, and provide a tractable system with clear clinical significance and importance to NIDDK. Collection of information from the flood of epigenomic data on hematopoietic cells as catalogs of validated regulatory modules, quantitative models for gene regulation, and a guide for translation of research insights from mouse to human.
|
analyze, mouse, human, hematopoietic, cell, blood, component, collection, epigenomic, data, catalog, gene, regulation
|
is listed by: NIDDK Information Network (dkNET)
|
|
National Institute for Diabetes and Digestive Diseases ;
NIH ;
NIDDK |
|
|
|
|
|
|
|
SCR_016921 |
ValIdated Systematic IntegratiON of epigenomic data, ValIdated Systematic IntegratiON |
2026-08-04 09:44:01 |
9 |
CellCycleTRACER
Resource Report
Resource Website
Rating or validation data
|
CellCycleTRACER (RRID:SCR_017128)
|
|
data processing software, data analysis software, web service, software resource, software application, data access protocol
|
Software tool as supervised machine learning algorithm that classifies and sorts single cell mass cytometry data according to their cell cycle, which allows to correct for cell cycle state and cell volume heterogeneity. Reveals signaling relationships and cell heterogeneity that were otherwise masked. Computational method to quantify cell cycle and cell volume variability.
|
classify, sort, single, cell, mass, cytometry, data, cycle, state, volume, heterogeneity, quantify, volume, variability
|
|
|
SNSF ;
European Research Council ;
NIDDK UC4 DK108132;
SystemsX MetastasiX grant |
PMID:29434325 |
Free, Restricted |
|
|
|
|
|
SCR_017128 |
|
2026-08-04 09:44:05 |
0 |
Heuristic Identification of Biological Architectures for simulating Complex Hierarchical Interactions
Resource Report
Resource Website
|
Heuristic Identification of Biological Architectures for simulating Complex Hierarchical Interactions (RRID:SCR_017140)
|
HIBACHI, hibachi
|
simulation software, software application, software resource
|
Software tool that creates data sets with particular characteristics. Method and open source software for simulating complex biological and biomedical data to aid in comparing and evaluating machine learning methods.
|
data, simulation, dataset, compare, machine, evaluate, learning, method
|
|
|
NLM LM012601;
NIAID AI116794;
NIDDK DK112217 |
PMID:29218887 |
Free, Available for download, Freely available |
|
|
|
|
|
SCR_017140 |
Heuristic Identification of Biological Architectures for simulating Complex Hierarchical Interactions |
2026-08-04 09:44:07 |
0 |
Joslin Diabetes Center
Resource Report
Resource Website
1+ mentions
|
Joslin Diabetes Center (RRID:SCR_009019)
|
Joslin, JDC
|
resource, portal, topical portal, access service resource, disease-related portal, service resource, data or information resource
|
Diabetes research center which provides patient care and performs diabetes research. Its primary aim is to provide a facilitating framework for conducting multi-disciplinary basic and clinical research and to encourage the scientific development of young investigators.
|
diabetes, patient, clinical, care, research, investigate, disease
|
is listed by: NIDDK Information Network (dkNET)
is affiliated with: Diabetes Research Centers
is related to: Harvard Bioinformatics Core at Joslin Diabetes Center
has parent organization: Harvard University; Cambridge; United States
is parent organization of: TINSAL-T2D
is parent organization of: Joslin Diabetes Center Advanced Genomics and Genetics Core Facility
is parent organization of: Joslin Diabetes Center Advanced Microscopy Core Facility
is parent organization of: Joslin Diabetes Center Animal Physiology Core Facility
is parent organization of: JDC Computer Resource
is parent organization of: Joslin Diabetes Center Flow Cytometry Core Facility
is parent organization of: JDC Genetics Core
is parent organization of: JDC Media Core
is parent organization of: Joslin Diabets Center Proteomics Core Facility
is parent organization of: JDC Specialized Assay Core
is parent organization of: Joslin Diabetes Center Islet Isolation Core
is parent organization of: Joslin Diabetes Center Genomics Core
is parent organization of: Joslin Diabetes Center Induced Pluripotent Stem Cell Core
is parent organization of: Joslin Diabetes Center Enrichment Core
is parent organization of: Joslin Diabetes Center Bioinformatics and Biostatistics Core
is parent organization of: Joslin Diabetes Center Molecular Phenotyping and Genotyping Core
has organization facet: Joslin Diabetes Center Advanced Genomics and Genetics Core Facility
has organization facet: Joslin Diabetes Center Advanced Microscopy Core Facility
has organization facet: Joslin Diabetes Center Animal Physiology Core Facility
has organization facet: Joslin Diabetes Center Bioinformatics and Biostatistics Core
has organization facet: Joslin Diabetes Center Enrichment Core
has organization facet: Joslin Diabetes Center Flow Cytometry Core Facility
has organization facet: Joslin Diabetes Center Induced Pluripotent Stem Cell Core
is organization facet of: Diabetes Research Centers
|
Diabetes |
NIDDK P30 DK036836 |
|
Available to the research community |
|
nlx_152856 |
|
|
|
SCR_009019 |
Joslin Diabetes Cntr |
2026-08-04 09:42:16 |
2 |
OligoGenome
Resource Report
Resource Website
1+ mentions
|
OligoGenome (RRID:SCR_006025)
|
OligoGenome
|
resource, database, data or information resource
|
The Stanford Human OligoGenome Project hosts a database of capture oligonucleotides for conducting high-throughput targeted resequencing of the human genome. This set of capture oligonucleotides covers over 92% of the human genome for build 37 / hg19 and over 99% of the coding regions defined by the Consensus Coding Sequence (CCDS). The capture reaction uses a highly multiplexed approach for selectively circularizing and capturing multiple genomic regions using the in-solution method developed in Natsoulis et al, PLoS One 2011. Combined pools of capture oligonucleotides selectively circularize the genomic DNA target, followed by specific PCR amplification of regions of interest using a universal primer pair common to all of the capture oligonucleotides. Unlike multiplexed PCR methods, selective genomic circularization is capable of efficiently amplifying hundreds of genomic regions simultaneously in multiplex without requiring extensive PCR optimization or producing unwanted side reaction products. Benefits of the selective genomic circularization method are the relative robustness of the technique and low costs of synthesizing standard capture oligonucleotide for selecting genomic targets.
|
oligonucleotide, genome, probe, coding region, oligonucleotide sequence, chromosome
|
has parent organization: Stanford University; Stanford; California
|
|
NHGRI RC2 HG005570-01;
NCI R21CA12848;
NCI 5K08CA96879?6;
NIDDK DK56339;
NHGRI 2P01HG000205;
NLM T15-LM007033;
Doris Duke Clinical Foundation ;
Reddere Foundation ;
Liu Bie Ju Cha and Family Fellowship in Cancer ;
Wang Family Foundation ;
Howard Hughes Medical Foundation |
PMID:22102592 |
|
|
nlx_151422 |
|
|
|
SCR_006025 |
Stanford Human Oligo Genome Project, Human OligoGenome Resource, Stanford Human Oligo Genome, Human Oligo Genome, Human OligoGenome |
2026-08-04 09:41:30 |
2 |
Network of Minority Health Research Investigators
Resource Report
Resource Website
1+ mentions
|
Network of Minority Health Research Investigators (RRID:SCR_006589)
|
NMRI
|
resource, portal, community building portal, data or information resource
|
Communication network of current and potential biomedical research investigators and technical personnel from traditionally under-served communities: African American, Hispanic American, American Indian, Alaskan Native, Native Hawaiian, and other Pacific Islanders. The major objective of the network is to encourage and facilitate participation of members of underrepresented racial and ethnic minority groups in the conduct of biomedical research in the fields of diabetes, endocrinology, metabolism, digestive diseases, nutrition, kidney, urologic and hematologic diseases. A second objective is to encourage and enhance the potential of the underrepresented minority investigators in choosing a biomedical research career in these fields. An important component of this network is promotion of two-way communications between network members and the NIDDK.
|
african-american, hispanic american, american indian, alaskan native, native hawaiian, pacific islander, minority, endocrinology, metabolism, nutrition, kidney, urology, hematology, digestion, minority health, race, ethnicity
|
is related to: NIDDK Information Network (dkNET)
has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
|
Diabetes, Digestive disease, Kidney disease, Urologic disease, Hematologic disease |
NIDDK |
|
|
|
nlx_152865 |
|
|
|
SCR_006589 |
Network of Minority Health Research Investigators (NMRI) |
2026-08-04 09:41:39 |
5 |
National Kidney Disease Education Program
Resource Report
Resource Website
10+ mentions
|
National Kidney Disease Education Program (RRID:SCR_006527)
|
NKDEP
|
resource, narrative resource, data or information resource, training material
|
Educational resource to increase awareness of kidney disease and its risk factors, improve early detection of chronic kidney disease (CKD), reduce the burden of CKD, facilitate identification of patients at greatest risk for progression to kidney failure, stress the importance of testing those at risk, promote evidence-based interventions to slow progression of CKD, and support the coordination of Federal responses to CKD. Target audiences include individuals at risk, particularly those with diabetes, high blood pressure, and a family history of kidney disease, and primary care providers.
|
kidney, risk factor, treatment, prevention, kidney failure, chronic kidney disease, nutrition, pediatric, intervention, disease-related portal
|
is related to: NIDDK Information Network (dkNET)
has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is parent organization of: Creatinine Standardization Program
is parent organization of: Glomerular Filtration Rate Calculators
|
Kidney disease, Chronic kidney disease |
NIDDK |
|
|
|
nlx_152712 |
|
|
|
SCR_006527 |
NKDEP: National Kidney Disease Education Program |
2026-08-04 09:41:36 |
35 |
HIRN Consortium on Modeling Autoimmune Interactions
Resource Report
Resource Website
1+ mentions
|
HIRN Consortium on Modeling Autoimmune Interactions (RRID:SCR_016200)
|
HIRN-CMAI
|
portal, organization portal, data or information resource, consortium
|
Consortium that is an independent research initiative of the Human Research Information Network (HIRN). It is developing innovative approaches to model basic aspects of human T1D immunobiology using novel in vivo and in vitro platforms.
|
autoimmune, disease, immunobiology, in vitro, research, in vivo
|
is organization facet of: Human Islet Research Network (HIRN)
|
|
NIDDK ;
NIDDK U01 DK104162;
NIDDK UC4 DK104218;
NIDDK UC4 DK104207;
NIDDK UC4 DK104194;
NIDDK UC4 DK104223;
NIDDK U01 DK107383;
NIDDK UC4 DK116284 |
|
|
|
|
|
|
|
SCR_016200 |
Consortium on Modeling Autoimmune Interactions (HIRN-CMAI) |
2026-08-04 09:43:50 |
1 |
HIRN Bioinformatics Center
Resource Report
Resource Website
1+ mentions
|
HIRN Bioinformatics Center (RRID:SCR_016203)
|
HIRN-BC
|
portal, organization portal, data or information resource, consortium
|
The Bioinformatics Center is located within the Department of Diabetes and Cancer Discovery Science at City of Hope and was established in 2014 to support the Human Islet Research Network (HIRN). The overall objective of the Bioinformatics Center is to advance type 1 diabetes knowledge generated through HIRN by providing the bioinformatics capability and infrastructure needed to support the Network. To achieve this goal, the Bioinformatics Center provides investigators with tools, processes, and methods to facilitate long term sharing, maintenance, and management of HIRN developed resources, including datasets, technologies, documents, and bioreagents. Collaboration and communication are cultivated through consultation and outreach activities. In 2019, HIRN received funding to continue HIRN Coordinating Center (CC) and Bioinformatics Center (BC) as Human Islet Research Enhancement Center (HIREC).
|
bioinformatics, sharing, maintenance, data set, bioengineering
|
is organization facet of: Human Islet Research Network (HIRN)
|
Type 1 diabetes, Diabetes |
NIDDK ;
NIDDK U01 DK104147 |
|
|
|
|
|
http://bclabs.hirnetwork.org/ |
|
SCR_016203 |
|
2026-08-04 09:43:50 |
1 |
Diabetes Epigenome Atlas
Resource Report
Resource Website
1+ mentions
|
Diabetes Epigenome Atlas (RRID:SCR_016441)
|
|
portal, topical portal, disease-related portal, atlas, database, data or information resource
|
Collects and provides data on the human genome and epigenome to facilitate genetic studies of type 2 diabetes and its complications. A component of the AMP T2D consortium, which includes the National Institute for Diabetes and Digestive and Kidney Diseases (NIDDK) and an international collaboration of researchers.
|
collect, provide, data, human, genome, epigenome, genetic, study, type 2 diabetes
|
has parent organization: Stanford University; Stanford; California
has parent organization: University of California at San Diego; California; USA
|
type 2 diabetes |
NIDDK U01 DK100554 |
|
Free, Proprietary data are available only to approved AMP consortium users with user accounts |
|
SCR_016537 |
|
|
|
SCR_016441 |
|
2026-08-04 09:43:53 |
2 |
biobakery
Resource Report
Resource Website
10+ mentions
|
biobakery (RRID:SCR_016596)
|
|
data processing software, data analysis software, software resource, software application, software toolkit
|
Analysis environment and collection of individual software tools to process raw shotgun metagenome or metatranscriptome sequencing data for quantitative microbial community profiling. Used for a metaomics data analysis., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
|
Huttenhower lab, metaomics, data, analysis, process, raw, shotgun, metagenome, metatranscriptome, sequencing, microbial, profiling, bio.tools
|
is used by: Nephele
is listed by: Debian
is listed by: bio.tools
is related to: Human Microbiome Project
has parent organization: Harvard University; Cambridge; United States
|
|
NIDDK U54 DE023798;
Sloan Foundation 4406J0B;
NHGRI R01 HG005220;
NSF DBI1053486;
NHGRI R01 HG005969;
ARO W911NF1110473 |
PMID:29194469 |
THIS RESOURCE IS NO LONGER IN SERVICE |
|
biotools:biobakery |
http://huttenhower.sph.harvard.edu/biobakery, https://bio.tools/biobakery |
|
|
SCR_016596 |
bioBakery, biobakery |
2026-08-04 09:43:57 |
13 |
PrediXcan
Resource Report
Resource Website
10+ mentions
|
PrediXcan (RRID:SCR_016739)
|
|
data processing software, software application, software resource, data analysis software
|
Software tool to detect known and novel genes associated with disease traits and provide insights into the mechanism of these associations. Used to test the molecular mechanisms through which genetic variation affects phenotype.
|
detect, gene, disease, associate, trait, mechanism, molecular, variation, phenotype
|
|
|
NCI K12 CA139160;
NCI F32CA165823;
NIMH T32 MH020065;
NIMH R01 MH101820;
NIMH R01 MH090937;
NIGMS U01 GM61393;
NIMH P50 MH094267;
NIGMS U01 GM092691;
NHLBI U19 HL065962;
NIDA P50 DA037844;
NIDDK P30 DK20595;
NIDDK P60 DK20595 |
PMID:26258848 |
Free, Available for download, Freely available |
|
|
|
|
|
SCR_016739 |
|
2026-08-04 09:43:59 |
23 |
HemBase
Resource Report
Resource Website
1+ mentions
|
HemBase (RRID:SCR_002880)
|
|
resource, database, data or information resource
|
Database designed for web-based examination of the human erythroid transcriptome. The database is organized to provide a cytogenetic band position, a unique name as well as a concise annotation for each entry. Search queries may be performed by name, keyword or cytogenetic location. Search results are linked to primary sequence data and three major human genome browsers for access to information considered current at the time of each search. Hembase provides interested scientists and clinical hematologists with a genome-based approach toward the study of erythroid biology. Red blood cells in the circulation arise from hematopoietic stem cells that proliferate as erythroid progenitors and differentiate into erythroid precursor cells in response to the hormone erythropoietin. Messenger RNA was isolated from those cells and used to generate gene libraries. Sequencing several thousand expressed sequence tags (EST) from those libraries was then performed. Those EST and sequences encoding several hundred additional genes with known expression in erythroid cells are compiled here as a database of human erythroid gene activity. The database is organized and linked according to the location of these sequences within the human genome., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 15,2026.
|
erythroid, erythroid cell, erythroblast, expressed sequenced tag, transcriptome, gene, erythropoiesis, cytogenetic location, hematology, genome, red blood cell, progenitor cell, precursor cell, chromosome
|
is listed by: NIDDK Information Network (dkNET)
is listed by: NIDDK Research Resources
has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
|
Anemia, Erythroleukemia, Malaria, Erythroid cell related disease |
NIDDK 1ZIADK025098 |
PMID:14681483
PMID:10409428 |
THIS RESOURCE IS NO LONGER IN SERVICE |
|
nif-0000-02949 |
|
|
|
SCR_002880 |
Hembase |
2026-08-04 09:40:45 |
4 |
DGAP
Resource Report
Resource Website
1+ mentions
|
DGAP (RRID:SCR_003036)
|
DGAP
|
resource, experimental protocol, narrative resource, database, data or information resource
|
Produce resources to unravel the interface between insulin action, insulin resistance and the genetics of type 2 diabetes including an annotated public database, standardized protocols for gene expression and proteomic analysis, and ultimately diabetes-specific and insulin action-specific DNA chips for investigators in the field. The project aims to identify the sets of the genes involved in insulin action and the predisposition to type 2 diabetes, as well as the secondary changes in gene expression that occur in response to the metabolic abnormalities present in diabetes. There are five major and one pilot project involving human and rodent tissues that are designed to: * Create a database of the genes expressed in insulin-responsive tissues, as well as accessible tissues, that are regulated by insulin, insulin resistance and diabetes. * Assess levels and patterns of gene expression in each tissue before and after insulin stimulation in normal and genetically-modified rodents; normal, insulin resistant and diabetic humans, and in cultured and freshly isolated cell models. * Correlate the level and patterns of expression at the mRNA and/or protein level with the genetic and metabolic phenotype of the animal or cell. * Generate genomic sequence from a panel of humans with type 2 diabetes focusing on the genes most highly regulated by insulin and diabetes to determine the range of sequence and expression variation in these genes and the proteins they encode, which might affect the risk of diabetes or insulin resistance. The DGAP project will define: * the normal anatomy of gene expression, i.e. basal levels of expression and response to insulin. * the morbid anatomy of gene expression, i.e., the impact of diabetes on expression patterns and the insulin response. * the extent to which genetic variability might contribute to the alterations in expression or to diabetes itself.
|
gene, insulin action, predisposition, gene expression, metabolic abnormality, diabetes, insulin resistance, genetics, insulin, genetic variation, proteomics, genomics, affymetrix oligonucleotide array, microarray, protein, genomic sequence, data set
|
is related to: NIDDK Information Network (dkNET)
has parent organization: Harvard Medical School; Massachusetts; USA
has parent organization: Broad Institute
has parent organization: Dana-Farber Cancer Institute
has parent organization: University of Massachusetts Medical School; Massachusetts; USA
has parent organization: University of Southern Denmark; Odense; Denmark
|
Type 2 diabetes, Normal, Insulin resistance |
NIDDK |
PMID:19786482 |
THIS RESOURCE IS NO LONGER IN SERVICE |
|
nif-0000-30414 |
|
|
|
SCR_003036 |
The Diabetes Genome Anatomy Project, Diabetes Genome Anatomy Project |
2026-08-04 09:40:48 |
9 |
BMAP cDNA Resources
Resource Report
Resource Website
1+ mentions
|
BMAP cDNA Resources (RRID:SCR_002973)
|
BMAP Resources
|
resource, portal, material service resource, topical portal, biomaterial manufacture, production service resource, service resource, data or information resource
|
As part of BMAP gene discovery efforts, mouse brain cDNA libraries and Expressed Sequence Tags (ESTs) have been generated. Through this project a BMAP mouse brain UniGene set consisting of over 24,000 non-redundant members of unique clusters has been developed from EST sequencing of more than 50,000 cDNA clones from 10 regions of adult mouse brain, spinal cord, and retina (http://brainEST.eng.uiowa.edu/). In 2001, NIMH along with NICHD, NIDDK, and NIDA, awarded a contract to the University of Iowa ( M.B. Soares, PI) to isolate full-length cDNA clones corresponding to genes expressed in the developing mouse nervous system and determine their full-coding sequences. The BMAP mouse brain EST sequences can be accessed at NCBI's dbEST database (http://www.ncbi.nlm.nih.gov/dbEST/). Arrayed sets of BMAP mouse brain UniGenes and cDNA libraries, and individual BMAP cDNA clones can be purchased from Open Biosystems, Huntsville, AL (http://www.openbiosystems.com
|
brain, spinal cord, retina, gene, cdna, library, est, cluster, clone, nervous system, dbest, database, gene discovery, cdna library, expressed sequence tag, coding sequence, adult
|
is related to: Nucleotide database
is related to: Open Biosystems
has parent organization: BMAP - Brain Molecular Anatomy Project
|
|
NINDS ;
NICHD ;
NIDDK ;
NIDA ;
NIMH N01 MH80014 |
|
THIS RESOURCE IS NO LONGER IN SERVICE |
|
nif-0000-30154 |
|
|
|
SCR_002973 |
Brain Molecular Anatomy Project cDNA Resources |
2026-08-04 09:40:47 |
2 |
Nuclear Receptor Resource
Resource Report
Resource Website
1+ mentions
|
Nuclear Receptor Resource (RRID:SCR_003285)
|
NRR
|
resource, database, data or information resource
|
Collection of individual databases on members of the steroid and thyroid hormone receptor superfamily. Although the databases are located on different servers and are managed individually, they each form a node of the NRR. The NRR itself integrates the separate databases and allows an interactive forum for the dissemination of information about the superfamily. NRR Components: Androgen receptor, Estrogen receptor, Glucocorticoid receptor, Peroxisome proliferator, Steroid receptor protein, Thyroid receptor, Vitamin D receptor.
|
nuclear receptor, androgen receptor, estrogen receptor, glucocorticoid receptor, peroxisome proliferator, steroid receptor protein, thyroid receptor, vitamin d receptor, androgen, estrogen, glucocorticoid, peroxisome, steroid, thyroid hormone, vitamin d, mineralocorticoid receptor, mineralocorticoid, protein, structure, function
|
is related to: NIDDK Information Network (dkNET)
has parent organization: Georgetown University; Washington D.C.; USA
|
|
NIDDK R01DK43382;
NIDDK K04 DK02105 |
PMID:9471621
PMID:9016529 |
THIS RESOURCE IS NO LONGER IN SERVICE |
|
nif-0000-03205 |
|
http://nrr.georgetown.edu/NRR/nrrhome.htm |
|
SCR_003285 |
Nuclear Receptor Resource Project, NRR Project, Nuclear Receptor Resource (NRR) Project |
2026-08-04 09:40:52 |
1 |
Cistrome
Resource Report
Resource Website
10+ mentions
|
Cistrome (RRID:SCR_000242)
|
|
data access protocol, software resource, web service
|
Web based integrative platform for transcriptional regulation studies.
|
Transcriptional, regulation, Chip, data, analysis, genome, gene, expression, motif, mining, bio.tools
|
is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
is related to: Galaxy
has parent organization: Harvard University; Cambridge; United States
|
|
Dana-Farber Cancer Institute High Tech and Campaign Technology Fund ;
National Basic Research Program of China ;
NHGRI HG004069;
NIDDK DK074967;
NIDDK DK062434 |
PMID:21859476 |
Free, Freely available |
|
SCR_017663, biotools:cistrome, OMICS_02173 |
http://cistrome.org/ap/root, https://bio.tools/cistrome |
|
|
SCR_000242 |
Galaxy Cistrome |
2026-08-04 09:40:05 |
16 |
MTOPS Prostate Samples Analysis Consortium
Resource Report
Resource Website
|
MTOPS Prostate Samples Analysis Consortium (RRID:SCR_000041)
|
MPSA Consortium
|
portal, organization portal, data or information resource, consortium
|
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 16,2023. Cross-disciplinary, multi-institutional network with wide range of experts to analyze serum and tissue samples collected in the Medical Therapy of Prostatic Symptoms (MTOPS) trial. Consortium aims to discover and validate biomarkers for the detection, risk assessment, and disease progression assessment of benign prostatic hyperplasia (BPH).
|
prostate, male, adult human, biomarker, serum, tissue, microarray
|
is affiliated with: Medical Therapy of Prostatic Symptoms
is related to: NIDDK Information Network (dkNET)
has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
|
Benign Prostatic Hyperplasia |
NIDDK 1U01DK063661 |
|
THIS RESOURCE IS NO LONGER IN SERVICE |
|
nlx_152864 |
|
|
|
SCR_000041 |
MTOPS Prostate Samples Analysis (MPSA) Consortium |
2026-08-04 09:40:02 |
0 |
NIDDK Information Network (dkNET)
Resource Report
Resource Website
10+ mentions
|
NIDDK Information Network (dkNET) (RRID:SCR_001606)
|
dkNET
|
portal, community building portal, database, data or information resource
|
The NIDDK Information Network (dkNET) is a community-based network to serve needs of basic and clinical investigators that includes large pools of data and research resources relevant to mission of National Institute of Diabetes and Digestive and Kidney Disease.
|
dknet, data resource, diabetes, kidney, liver, disease, urology, hematology, digestive, nutrition, endocrine, obesity, metabolic
|
uses: NIDDK Central Repository
uses: Addgene
uses: NIF Data Federation
uses: Antibody Registry
uses: Nuclear Receptor Signaling Atlas
uses: GenitoUrinary Development Molecular Anatomy Project
uses: Diabetic Complications Consortium
uses: National Mouse Metabolic Phenotyping Centers
uses: T1DBase
uses: Beta Cell Biology Consortium
uses: Grants.gov
uses: dkNET Community Pilot Funding Opportunities
uses: Integrated Grants
uses: ClinicalTrials.gov
uses: Integrated Animals
uses: Intestinal Stem Cell Consortium
recommends: Biological General Repository for Interaction Datasets (BioGRID)
recommends: Cell Image Library (CIL)
recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D)
recommends: NIDDK Central Repository
recommends: Network Data Exchange (NDEx)
recommends: PeptideAtlas
recommends: International Mouse Phenotyping Consortium (IMPC)
recommends: FlyBase
recommends: Metabolomics Workbench
recommends: Zebrafish Information Network (ZFIN)
recommends: Mouse Genome Informatics (MGI)
recommends: Database of Interacting Proteins (DIP)
recommends: UniProt
recommends: PhysioNet
recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
recommends: ClinicalTrials.gov
recommends: dbVar
recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL)
recommends: WormBase
recommends: dbSNP
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recommends: Database of Genomic Variants Archive (DGVa)
recommends: NCBI Sequence Read Archive (SRA)
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recommends: PDBj - Protein Data Bank Japan
recommends: Inorganic Crystal Structure Database (ICSD)
recommends: Structural Biology Grid
recommends: NCBI database of Genotypes and Phenotypes (dbGap)
recommends: ArrayExpress
recommends: EMDataResource.org
recommends: Cambridge Crystallographic Data Centre (CCDC)
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recommends: Japanese Genotype-phenotype Archive (JGA)
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recommends: The Immunology Database and Analysis Portal (ImmPort)
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lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Animal Metabolism Phenotyping Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Biostatistics Program
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Clinical Nutrition Research Facilitation Program
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Communication for Health Applications and Interventions Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Diet and Physical Activity Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Metabolic Molecular Phenotyping Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Nutrigenetics Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Research Facilitation Program
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center
lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Cell Morphology Core
lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Immunology Core
lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis
lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Vector Core Facility
lists: University of Washington Diabetes Research Center Administrative Core
lists: University of Washington Diabetes Research Center Cell Function Analysis Core Facility
lists: University of Washington Diabetes Research Center Cellular and Molecular Imaging Core
lists: University of Washington Diabetes Research Center Human Studies Core Facility
lists: University of Washington Diabetes Research Center Quantitative and Functional Proteomics Core Facility
lists: University of Washington Diabetes Research Center
lists: University of Washington Diabetes Research Center Vector and Transgenic Mouse Core
lists: Vanderbilt Diabetes Research and Training Center Cell Imaging Shared Resource Core Facility
lists: Vanderbilt Diabetes Research and Training Center Hormone Assay and Analytical Services Core Facility
lists: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core
lists: Vanderbilt Diabetes Research and Training Center Metabolic Physiology Shared Resource
lists: Vanderbilt Diabetes Research and Training Center
lists: Vanderbilt Diabetes Research and Training Center Transgenic Mouse and ES Cell Shared Resource
lists: Vanderbilt Diabetes Research and Training Center Vanderbilt Diet Body Composition and Metabolism Core Facility
lists: Vanderbilt Digestive Disease Research Center Bioanalytical Mass Spectrometry and Proteomics Core
lists: Vanderbilt Digestive Disease Research Center Cellular Imaging Core
lists: Vanderbilt Digestive Disease Research Center Flow Cytometry Core
lists: Vanderbilt Digestive Disease Research Center
lists: University of Washington Nutrition and Obesity Research Center Adipose Tissue and Obesity Core
lists: University of Washington Nutrition and Obesity Research Center Administrative and Enrichment Core
lists: University of Washington Nutrition and Obesity Research Center Analytic Core
lists: University of Washington Nutrition and Obesity Research Center Energy Balance Core
lists: Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core
lists: University of Washington Nutrition and Obesity Research Center
lists: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core Facility
lists: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core Facility
lists: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core
lists: USC Liver Transplant Program and Center for Liver Disease Analytical Metabolic Instrumentation Core
lists: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core
lists: USC Liver Transplant Program and Center for Liver Disease Cell and Tissue Imaging Core
lists: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core
lists: Washington University Center for Diabetes Translation Research
lists: USC Liver Transplant Program and Center for Liver Disease Cell Separation and Culture Core
lists: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core
lists: Washington University Digestive Diseases Research Core Center Administrative and Resource Access Core
lists: USC Liver Transplant Program and Center for Liver Disease Liver Histology Core
lists: USC Liver Transplant Program and Center for Liver Disease
lists: Vanderbilt Center for Diabetes Translation Research Administrative Core
lists: Vanderbilt Center for Diabetes Translation Research Behavioral Intervention Technologies and Services Core
lists: Vanderbilt Center for Diabetes Translation Research Community Engagement Core
lists: Vanderbilt Center for Diabetes Translation Research Community Outreach and Heath Disparities Core
lists: Vanderbilt Center for Diabetes Translation Research
lists: Washington University Digestive Diseases Research Core Center Advanced Imaging and Tissue Analysis Core
lists: Vanderbilt Center for Diabetes Translation Research Translation Methods Core
lists: Washington University Digestive Diseases Research Core Center Biobank Core
lists: Yale Liver Center
lists: Washington University Digestive Diseases Research Core Center Murine Models and Gnotobiotics Core
lists: Yale Liver Center Morphology Core
lists: Washington University Digestive Diseases Research Core Center
lists: Yale Liver Center Clinical and Translational Core
lists: Washington University School of Medicine Diabetes Research Center Cell and Tissue Imaging Core
lists: Yale Liver Center Cellular and Molecular Physiology Core
lists: Washington University School of Medicine Diabetes Research Center Diabetes Models Phenotyping Core Facility
lists: Yale Liver Center Administrative Core
lists: Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core
lists: Yale Diabetes Research Center
lists: Washington University School of Medicine Diabetes Research Center Immunology of Type 1 Diabetes Core
lists: Yale Diabetes Research Center Physiology Core Facility
lists: Washington University School of Medicine Diabetes Research Center Mass Spectrometry Core
lists: Yale Diabetes Research Center Molecular Genetics Core
lists: Yale Diabetes Research Center Molecular Core Facility
lists: Washington University School of Medicine Diabetes Research Center Morphology and Metabolic Analysis Core
lists: Yale Diabetes Research Center Diabetes Translational Core Facility
lists: Washington University School of Medicine Diabetes Research Center
lists: Washington University School of Medicine Diabetes Research Center Transgenic and ES Cell Core
lists: Yale Diabetes Research Center Clinical Metabolism Core Facility
lists: Yale Diabetes Research Center Cell Biology Core Facility
lists: Washington University St. Louis Nutrition Obesity Research Center
lists: Yale Diabetes Research Center Administrative Core Facility
lists: Yale Cooperative Center of Excellence in Hematology Animal Modeling Core
lists: Yale Cooperative Center of Excellence in Hematology
lists: Yale Cooperative Center of Excellence in Hematology Cell Preparation and Analysis Core
lists: Yale Cooperative Center of Excellence in Hematology Imaging Core
lists: Harvard Digestive Disease Center
lists: Harvard Digestive Diseases Center Biomedical CORE B: Microscopy and Histopathology
lists: Harvard Digestive Diseases Center Biomedical CORE C: Epithelial Cell and Mucosal Immunology
lists: Harvard Digestive Diseases Center Biomedical CORE D: Gnotobiotic Mice, Microbiology and Metagenomics
lists: Harvard Digestive Diseases Center Clinical Translational Research Program
lists: Harvard Digestive Diseases Center Bio-Repository and Data Registry for Human Material
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Integrated Physiology Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Image Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Proteomics Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Translational Research Enhancement Core
lists: UCSF Liver Center
lists: UCSF Liver Center Cell Biology Core
lists: UCSF Liver Center Clinical & Translational Core
lists: UCSF Liver Center Immunology Core
lists: UCSF Liver Center Pathology & Imaging Core
lists: University of Chicago Digestive Diseases Research Core Center
lists: University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core
lists: University of Chicago Digestive Diseases Research Core Center Administrative Core
lists: University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core
lists: University of Chicago Digestive Diseases Research Core Center Host-Microbe Core
lists: University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core
lists: University of Michigan Center for Gastrointestinal Research
lists: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core
lists: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core
lists: University of Michigan Center for Gastrointestinal Research Molecular Biology Core
lists: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Advanced Analytics Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Biostatistics and Data Management Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Gnotobiotic Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Histology Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Large Animal Models Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Microbiome Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Molecular Pathology and Imaging Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Host-Microbial Analytic and Repository Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Genetically-Modified Mouse Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core
lists: Joslin Diabetes Center Molecular Phenotyping and Genotyping Core
lists: University of Pennsylvania Diabetes Research Center
lists: Preventing Early Renal Loss in Diabetes (PERL)
lists: Clinical Trials in Organ Transplantation in Children (CTOT-C)
lists: Clinical Trials in Organ Transplantation (CTOT)
lists: Stanford Diabetes Research Center
lists: Monogenic Diabetes Registry
lists: Chronic Prostatitis Collaborative Research Network Clinical Trial- Alfuzosin
lists: National Glycohemoglobin Standardization Program
lists: MetaCyto
lists: JOINSOLVER
lists: HASP
lists: NetCirChro
lists: Simmune
lists: ABC Bacterial Transporter Systems Database
lists: Kidney Precision Medicine Project
lists: ValIdated Systematic IntegratiON of epigenomic data
lists: The Human BioMolecular Atlas Program
lists: Prevention of Lower Urinary Tract Symptoms
lists: Illuminating the Druggable Genome
lists: 4D Nucleome
lists: immuneXpresso
lists: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain
lists: Secrepedia
lists: MoTrPAC Data Hub
lists: Human Cell Atlas
lists: PANC-DB
lists: Rare and Atypical Diabetes Network
lists: Diabetes Control and Complications Trial
lists: Diabetes Data and Hypothesis Hub
lists: Common Metabolic Diseases Knowledge Portal
lists: Type 1 Diabetes Knowledge Portal
lists: Sleep Disorder Knowledge Portal
lists: Cardiovascular Disease Knowledge Portal
lists: Cerebrovascular Disease Knowledge Portal
lists: Trans-Omics for Precision Medicine (TOPMed) Program
lists: All of Us
lists: AI-READI
is listed by: NIH Data Sharing Repositories
is listed by: NIDDK Research Resources
is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology
is related to: MTOPS Prostate Samples Analysis Consortium
is related to: Neuroscience Information Framework
is related to: Diabetes Disease Portal
is related to: Kidney and Urinary Pathway Knowledge Base
is related to: dbMHC
is related to: Islet Cell Resource Centers
is related to: DGAP
is related to: Nuclear Receptor Resource
is related to: dkCOIN
is related to: Human Biological Data Interchange
is related to: National Gene Vector Biorepository
is related to: Creatinine Standardization Program
is related to: Glomerular Filtration Rate Calculators
is related to: Congressionally Directed Medical Research Program
is related to: National Kidney Disease Education Program
is related to: Network of Minority Health Research Investigators
is related to: National Endocrine and Metabolic Diseases Information Service
is related to: Kidney and Urinary Pathway Ontology
is related to: National Diabetes Information Clearinghouse
is related to: Digestive Diseases Statistics for the United States
is related to: Diabetes in America
is related to: National Digestive Diseases Information Clearinghouse
is related to: Diabetes Control and Complications Trial
is related to: National Hematologic Diseases Information Service
is related to: National Kidney and Urologic Diseases Information Clearinghouse
is related to: Nonhuman Primate Transplantation Tolerance Cooperative Study Group
is related to: Type 1 Diabetes Preclinical Testing Program
is related to: Diabetes Autoantibody Standardization Program
is related to: AASK Clinical Trial and Cohort Study
is related to: Maryland Genetics of Interstitial Cystitis
is related to: Frequent Hemodialysis Network Nocturnal Trial
is related to: Mammalian Gene Collection
is related to: Zebrafish Gene Collection
is related to: Boston Area Community Health Survey
is related to: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia
is related to: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study
is related to: Complementary and Alternative Medicine for Urological Symptoms
is related to: Mouse Mutagenesis Center for Developmental Defects
is related to: CARDS Database
is related to: ACCORD
is related to: Program to Reduce Incontinence by Diet and Exercise
is related to: Renal Disease Portal
is related to: Renin Angiotensin System Study
is related to: NIH Data Sharing Repositories
is related to: Kidney Development Database
is related to: GenePaint Interactive Anatomy Atlas
is related to: EMAGE Gene Expression Database
is related to: Gene Expression Omnibus
is related to: MGnify
is related to: FAIR Data Informatics Laboratory
is related to: Type 1 Diabetes Knowledge Portal
is related to: Polycystic Kidney Disease Research Resource Consortium
has parent organization: SciCrunch
has parent organization: University of California at San Diego; California; USA
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Digestive disease, Kidney disease, Diabetes, Metabolic disease, Endocrine disease, Obesity, Urologic disease, Type 1 diabetes, Type 2 diabetes |
NIDDK U24 DK097771 |
PMID:26393351 |
Free, Freely available |
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nlx_153866, r3d100012845 |
http://scicrunch.org/dknet, https://doi.org/10.17616/R31NJMEL |
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SCR_001606 |
National Institute of Diabetes and Digestive and Kidney Disease Information Network, NIDDK Information Network, DKnet, NIDDKInformation Network |
2026-08-04 09:40:25 |
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