University of Florida; Florida; USA
Resource Report
Resource Website
1+ mentions
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University of Florida; Florida; USA (RRID:SCR_000145)
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UF
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university
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Public research university in Gainesville, Florida, United States. Member of state university system of Florida with undergraduate and graduate programs in arts and sciences.
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university, undergraduate, graduate, florida
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is listed by: Florida ExpertNet is affiliated with: Helmsley Cellular Research Hub is related to: Clinical and Translational Science Awards Consortium is related to: EnCor Biotechnology Inc. is related to: National High Magnetic Field Laboratory High B/T Core Facility is related to: National High Magnetic Field Laboratory Advanced Magnetic Resonance Imaging and Spectroscopy Core Facility is related to: Mnemiopsis Genome Project Portal is parent organization of: University of Florida College of Medicine; Florida; USA is parent organization of: ESPRIT is parent organization of: University of FLorida College of Medicine Molecular Pathology Core Facility is parent organization of: SNPper is parent organization of: ShapeComplexAtlas is parent organization of: University of Florida Labs and Facilities is parent organization of: MAPPER - Multi-genome Analysis of Positions and Patterns of Elements of Regulation is parent organization of: SobekCM is parent organization of: M-pick is parent organization of: ESPRIT-Tree is parent organization of: VIVO is parent organization of: MRM NeAt (Neurological Atlas) Mouse Brain Database is parent organization of: PASTA is parent organization of: Multi-fiber Reconstruction from DW-MRI is parent organization of: fanDTasia Java Applet: DT-MRI Processing is parent organization of: Mouse Brain Image Visualizer (MBIV) is parent organization of: Barth Syndrome Biorepository is parent organization of: Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0 is parent organization of: International Affective Picture System is parent organization of: FastqSifter is parent organization of: University of Florida Department of Chemistry Nuclear Magnetic Resonance Core Facility is parent organization of: University of Florida ICBR Cytometry Core Facility is parent organization of: University of Florida ICBR Bioinformatics Core Facility is parent organization of: University of Florida ICBR Electron Microscopy Core Facility is parent organization of: University of Florida ICBR Monoclonal Antibody Core Facility is parent organization of: University of Florida ICBR Gene Expression and Genotyping Core Facility is parent organization of: University of Florida ICBR NextGen DNA Sequencing Core Facility is parent organization of: University of Florida ICBR Proteomics and Mass Spectrometry Core Facility is parent organization of: Human Atlas of Neonatal Development and Early Life Immunity is parent organization of: Florida research open source synchronization tool is parent organization of: University of Florida UF Scripps Biomedical Research Bioinformatics and Statistics Core Facility is parent organization of: University of Florida Scripps Florida Histology Core Facility is parent organization of: University of Florida Health Mass Spectrometry and Proteomics Core Facility is parent organization of: University of Florida Scripps Institute for Biomedical Innovation and Technology Structural Biology Cryo Electron Microscopy Core Facility is parent organization of: University of Florida Systems Physiology and Omics Core Facility is parent organization of: University of FLorida College of Medicine Molecular Pathology Core Facility is parent organization of: University of Florida Herbert Wertheim College of Engineering Research Service Centers Core Facility is parent organization of: Herbert Wertheim University of Florida Scripps Institute for Biomedical Innovation and Technology Mouse Behavior Core Facility is parent organization of: Herbert Wertheim University of Florida Scripps Institute for Biomedical Innovation and Technology Genetic Perturbation Screening Core Facility is parent organization of: University of Florida Scripps Institute for Biomedical Innovation and Technology Flow Cytometry Core Facility is parent organization of: University of Florida Scripps Institute for Biomedical Innovation and Technology Metabolic Core Facility is parent organization of: Herbert Wertheim University of Florida Scripps Institute for Biomedical Innovation and Technology Genomics Core Facility is parent organization of: Herbert Wertheim University of Florida Scripps Institute for Biomedical Innovation and Technology Advanced Light Microscopy Core Facility is parent organization of: National MagLab University of Florida McKnight Brain Institute Advanced Magnetic Resonance Imaging and Spectroscopy AMRIS Core Facility is parent organization of: University of Florida Nanoscale Research Facility NRF Core Facility hosts: National High Magnetic Field Laboratory
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ISNI:0000 0004 1936 8091, nlx_80063, Crossref funder ID:100007698, Wikidata:Q501758, grid.15276.37 |
https://ror.org/02y3ad647 |
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SCR_000145 |
SciCrunch Registry |
University of Florida (UF), University of Florida, UFlorida |
2026-10-31 12:12:34 |
1 |
Stanford University; Stanford; California
Resource Report
Resource Website
50+ mentions
|
Stanford University; Stanford; California (RRID:SCR_011538)
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university
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Private, non profit university in Stanford, California, USA for research and undergraduate and graduate studies. Known for its academic strength, wealth, proximity to Silicon Valley, and ranking as one of the world's top universities. Particularly noted for its entrepreneurship and is one of the most successful universities in attracting funding for start-ups.
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private, university, institution, undergraduate, program, resource, graduate
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uses: ShareLaTeX uses: ReadCube uses: Scizzle uses: Sparrho uses: GenomeCompiler uses: LabArchives is affiliated with: Integrative Human Microbiome Project is affiliated with: Diabetes Epigenome Atlas is related to: Stanford Research Institute International is related to: Alzheimers Disease Genetics Consortium is related to: Beta Cell Biology Consortium is related to: Clinical and Translational Science Awards Consortium is related to: ShareLaTeX is related to: LabArchives is related to: Diabetic Foot Consortium is related to: GENSCAN is related to: Center for Expanded Data Annotation and Retrieval is parent organization of: MAXCHELATOR is parent organization of: Sea Urchin Embryology is parent organization of: SNPiR is parent organization of: GERP is parent organization of: Wnt homepage is parent organization of: Biozon is parent organization of: VectorDB- Molecular Biology Vector Sequence Database is parent organization of: HighWire Press is parent organization of: BFCounter is parent organization of: Clarity resources is parent organization of: PoissonSeq is parent organization of: Flybrain at Stanford is parent organization of: Stanford Genomics Service Center Core Facility is parent organization of: STRUCTURE is parent organization of: RVD is parent organization of: OpenSim is parent organization of: PharmGKB is parent organization of: JETTA is parent organization of: Phoenix is parent organization of: WEBMAXC STANDARD is parent organization of: Ontology Development and Information Extraction is parent organization of: Stanford Translational Research Integrated Database Environment and Clinical Data Warehouse is parent organization of: Phenotree is parent organization of: Quantitative Enrichment of Sequence Tags is parent organization of: WholeCellKB is parent organization of: Simbios is parent organization of: Neurogrid is parent organization of: T-lex is parent organization of: HighWire is parent organization of: Tissue Microarray Database is parent organization of: Stanford TMA Software is parent organization of: TMA-Combiner is parent organization of: Stanford Center for Biomedical Informatics Research is parent organization of: amide is parent organization of: Wnt Database is parent organization of: OligoGenome is parent organization of: HyBrow (Hypothesis Browser) is parent organization of: DataWrangler is parent organization of: BenchWise is parent organization of: Neurobiological Image Management System is parent organization of: Target genes of Wnt/beta-catenin signaling is parent organization of: HPMR - Human Plasma Membrane Receptome is parent organization of: LPFC: A Library of Protein Family Cores is parent organization of: YDPM - Yeast Deletion Project is parent organization of: SimTKCore is parent organization of: Postdoctoral Program for Veterinarians is parent organization of: Alizadehlab: MeeboChip and HeeboChip Open Source Project is parent organization of: Q-Value Software is parent organization of: LAGAN is parent organization of: xjView: A Viewing Program For SPM is parent organization of: Exon Array Browser is parent organization of: Coursera is parent organization of: iPOP is parent organization of: SSRL Structural Molecular Biology is parent organization of: SpliceMap is parent organization of: MAPP is parent organization of: SAM is parent organization of: Stanford University School of Medicine; California; USA is parent organization of: ProbCons is parent organization of: Genovo is parent organization of: American Parkinson's Disease Association Information and Referral Center is parent organization of: Sequencing of Candida Albicans is parent organization of: Jambalaya is parent organization of: Simbiome is parent organization of: SciTran is parent organization of: Brain RNA-Seq is parent organization of: CytoSPADE is parent organization of: BioPortal is parent organization of: Research Network in Early Experience and Brain Development is parent organization of: STOP is parent organization of: NCBO Annotator is parent organization of: PubSearch is parent organization of: EM3D is parent organization of: Joint Center for Structural Genomics is parent organization of: ToRNADo is parent organization of: SGD is parent organization of: Stanford CNI is parent organization of: Stanford CoreNLP is parent organization of: GenomeSpace is parent organization of: Encode is parent organization of: OpenNeuro is parent organization of: Poldracklab Portal is parent organization of: Diabetes Epigenome Atlas is parent organization of: MrDiffusion is parent organization of: Stanford Center for Reproducible Neuroscience is parent organization of: Stanford Diabetes Research Center Diabetes Genomics Analysis Core is parent organization of: Biostrings is parent organization of: CIBERSORT is parent organization of: Shannon is parent organization of: VORTEX is parent organization of: Optogenetics Resource Center is parent organization of: Brain RNA-Seq is parent organization of: LeafCutter is parent organization of: Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility is parent organization of: Stanford University Human Immune Monitoring Center Core Facility is parent organization of: Preseq is parent organization of: CRISPR-ERA is parent organization of: WEBMAXC EXTENDED is parent organization of: Stanford Graduate School of Business Data, Analytics, and Research Computing Core Facility is parent organization of: Stanford University Community of Shared Advanced Research Platforms is parent organization of: Stanford Sarafan Chemistry, Engineering and Medicine for Human Health Knowledge Centers Core Facility is parent organization of: Stanford Sarafan Protein Engineering Knowledge Center Core Facility is parent organization of: Stanford Sarafan Metabolomics Knowledge Center Core Facility is parent organization of: Stanford Nanofabrication Core Facility is parent organization of: Stanford Sarafan Macromolecular Structure Knowledge Center Core Facility is parent organization of: Stanford Sarafan Medicinal Chemistry Knowledge Center Core Facility is parent organization of: Stanford Graduate School of Business Behavioral Lab Core Facility is parent organization of: Stanford Nano Shared Core Facility is parent organization of: Stanford System Prototyping Core Facility is parent organization of: Stanford Graduate School of Business Library is parent organization of: Stanford Vincent V.C. Woo Sandbox Laboratory Core Facility is parent organization of: Stanford Behavioral and Functional Neuroscience Laboratory Core Facility is parent organization of: Stanford Neuroscience Gene Vector and Virus Core Facility is parent organization of: Stanford Visualization Laboratory Core Facility is parent organization of: Stanford Geochronology Cluster Core Facility is parent organization of: Stanford Stable Isotope Biogeochemistry Laboratory Core Facility is parent organization of: Stanford Neuroscience Preclinical Imaging Laboratory Core Facility is parent organization of: Stanford Environmental Measurements Core Facility is parent organization of: Stanford Microchemical Analysis Core Facility is parent organization of: Stanford Neuroscience Microscopy Service Core Facility is parent organization of: Stanford Doerr School of Sustainability Sample Preparation Laboratory Core Facility is parent organization of: Stanford SIGMA Shared Facility is parent organization of: Stanford School of Medicine Translational Applications Service Center Core Facility is parent organization of: Stanford University School of Medicine Beckman Center for Molecular and Genetic Medicine Core Facility is parent organization of: Stanford University Chemistry Department NMR Facility is parent organization of: Stanford University School of Medicine Biobank Core Facility is parent organization of: Stanford University School of Medicine Center for Innovation in In vivo Imaging Core Facility is parent organization of: Stanford University School of Medicine Richard M. Lucas Center for Imaging Core Facility is parent organization of: Stanford University School of Medicine PET/MRI Metabolic Service Center Core Facility is parent organization of: Stanford University School of Medicine In Vitro Biosafety Level3 Service Center Core Facility is parent organization of: Stanford University School of Medicine Human Pathology Histology Services Laboratory Core Facility is parent organization of: Stanford University School of Medicine Genetics Bioinformatics Service Center Core Facility is parent organization of: Stanford Canary Center Preclinical Imaging Core Facility is parent organization of: Stanford University School of Medicine Transgenic, Knockout and Tumor model Center Core Facility is parent organization of: Stanford University School of Medicine Veterinary Service Center Core Facility is parent organization of: Stanford University School of Medicine Cancer Institute Tissue Procurement Shared Resource Core Facility is parent organization of: Stanford University School of Medicine Clinical and Translational Research Unit Core Facility is parent organization of: Stanford University School of Medicine Institute for Stem Cell Biology and Regenerative Medicine FACS Core Facility is parent organization of: Stanford University School of Medicine Animal Diagnostic Laboratory Core Facility is parent organization of: Stanford University Computer Science Department Computer Core Facility is parent organization of: Stanford University Instrumentation Shop Core Facility is parent organization of: Stanford University Cyclotron and Radiochemistry Core Facility is parent organization of: Stanford University Biomaterials and Advanced Drug Delivery Laboratory Core Facility is parent organization of: Stanford University Chemistry Department Optics Core Facility is parent organization of: Stanford University School of Medicine Computational Services and Bioinformatics Core Facility is parent organization of: Stanford University School of Medicine Laboratory for Cell and Gene Medicine Core Facility is parent organization of: Stanford University Research Computing is parent organization of: Stanford University Physics Machine Shop Core Facility is parent organization of: Stanford University High Performance Computing Center Core Facility is parent organization of: Stanford Center for High Throughput Quantitative Biology Core Facility is parent organization of: Stanford University Quantitative Sciences Unit Core Facility is parent organization of: Stanford University School of Medicine Cancer Institute Biostatistics Shared Resource Core Facility is parent organization of: Stanford Spectrum Biostatistics Epidemiology and Research Design Core Facility is parent organization of: STRUCTURE is parent organization of: Stanford University Additive Manufacturing and Printing Core Facility is parent organization of: Stanford University Koret Human Neurosciences Community Laboratory Core Facility is parent organization of: Stanford University Microfluidics Foundry Core Facility is parent organization of: Stanford University School of Medicine Protein and Nucleic Acid Core Facility is parent organization of: WebProtege is parent organization of: Stanford Cryo-Electron Microscopy Center Core Facility is parent organization of: Stanford Geomicrobiology Shared Laboratories Core Facility is parent organization of: Stanford University Cosmogenic Isotope Lab Core Facility is parent organization of: Stanford Research Computing Core Facility is parent organization of: Stanford University Mineralogy and Petrology Lab Core Facility is parent organization of: Stanford University MicroCT Core Facility is parent organization of: Stanford Ecosystems Shared Laboratory Core Facility is parent organization of: DADA2 is parent organization of: OpenMM is parent organization of: Stanford CVI Biobank is parent organization of: Stanford University Nucleus at Sarafan ChEM-H Chemoproteomics Group Core Facility has organization facet: MARIA
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nlx_44253, grid.168010.e, Wikidata:Q41506, Crossref funder ID:100005492, ISNI:419368956 |
https://ror.org/00f54p054 |
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SCR_011538 |
SciCrunch Registry |
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2026-10-31 12:15:25 |
70 |
University College London; London; United Kingdom
Resource Report
Resource Website
10+ mentions
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University College London; London; United Kingdom (RRID:SCR_011603)
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UCL
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university
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Public research university located in London, England.
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uses: ReadCube uses: Scizzle uses: Writefull uses: Research Accelerator is related to: Predict-TB is related to: OncoTrack is related to: EU-AIMS is related to: International AMD Genetics Consortium is related to: EMIF is parent organization of: Bio-derived Feedstocks for Sustainable UK-Based Manufacture of Chemicals and Pharmaceutical Intermediates is parent organization of: UCL Biobank is parent organization of: Zebrafish Brain Atlas is parent organization of: Abysis Database is parent organization of: Colour and Vision Research Laboratory is parent organization of: Open Source Brain is parent organization of: Camino is parent organization of: pSTIING is parent organization of: UCL Medical School; London; United Kingdom is parent organization of: MIRIAD is parent organization of: NiftyRec is parent organization of: TractoR: Tractography with R is parent organization of: NeuroML is parent organization of: NeuroMatic is parent organization of: Neuroendocrine Tumors Biobank is parent organization of: UCL/UCLH Biobank for Studying Health and Disease is parent organization of: Queen Square Brain Bank is parent organization of: Cardiovascular Gene Ontology Annotation Initiative is parent organization of: UCL Motor Control Group is parent organization of: UCL Institute of Neurology is parent organization of: NiftySim is parent organization of: NiftyReg is parent organization of: English Longitudinal Study of Ageing is parent organization of: Decombinator is parent organization of: NODDI Matlab Toolbox is parent organization of: PRoNTo is parent organization of: SPM is parent organization of: BioRAT is parent organization of: VIDA is parent organization of: neuroConstruct is parent organization of: CATH: Protein Structure Classification is parent organization of: Gene3D is parent organization of: Genomic Threading Database is parent organization of: Bahler Laboratory: Genome Regulation is parent organization of: FH HUS Mutation Database is parent organization of: Tissue Access for Patient Benefit is parent organization of: PSIPRED is parent organization of: UCL Bioinformatics Group is parent organization of: TREES toolbox is parent organization of: NCL Resource - A gateway for Batten disease is parent organization of: DC Analysis programs is parent organization of: BioRAT is parent organization of: EPIGEN is parent organization of: Human Developmental Biology Resource is parent organization of: PomBase is parent organization of: NeuroGEMS informatics software is parent organization of: ReadqPCR is parent organization of: MISST - Microstructure Imaging Sequence Simulation ToolBox is parent organization of: DTI-TK is parent organization of: NiftyFit is parent organization of: FRAGFOLD is parent organization of: Suite2P is parent organization of: TSDiffAna is parent organization of: Silver Lab Microscopy Software is parent organization of: Mutation and Patient Database is parent organization of: ApiNATOMY is parent organization of: BonVision project is parent organization of: QSBB Digital Pathology Resource is parent organization of: University College London Darwin Research Core Facility is parent organization of: University College London Centre for Cell and Molecular Dynamics Core Facility is parent organization of: University College London LMCB Light Microscopy Core Facility is parent organization of: University College London Genomics Core Facility is parent organization of: University College London School of Pharmacy Nuclear Magnetic Resonance Core Facility is parent organization of: University College London School of Pharmacy Mass Spectrometry Core Facility is parent organization of: University College London LMCB Electron Microscopy Core Facility is parent organization of: University College London Single Cell and Spatial Omics Platform Core Facility is parent organization of: University College London Molecular Biology Core Facility is parent organization of: University College London Cancer Institute Pathology Translational Technology Platform TTP Core Facility is parent organization of: University College London Mathematical and Physical Sciences Transmission Electron Microscopy Core Facility is parent organization of: University College London Ear Institute Microscopy Unit Core Facility is parent organization of: University College London Sainsbury Wellcome Centre Advanced Microscopy Core Facility
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ISNI:121901201, Wikidata:Q193196, nlx_86831, Crossref funder ID:501100000765, grid.83440.3b |
https://ror.org/02jx3x895 |
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SCR_011603 |
SciCrunch Registry |
University College London |
2026-10-31 12:15:26 |
22 |
MATLAB
Resource Report
Resource Website
10000+ mentions
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MATLAB (RRID:SCR_001622)
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MATLAB
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data processing software, image processing software, programming language, software application, software resource
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Multi paradigm numerical computing environment and fourth generation programming language developed by MathWorks. Allows matrix manipulations, plotting of functions and data, implementation of algorithms, creation of user interfaces, and interfacing with programs written in other languages, including C, C++, Java, Fortran and Python. Used to explore and visualize ideas and collaborate across disciplines including signal and image processing, communications, control systems, and computational finance.
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computing, analyze, visualization, algorithm, plot, vector, matrix
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uses: Functional Network Connectivity (FNC) uses: MVGC Multivariate Granger Causality Matlab Toolbox uses: UltraMegaSort 2000 uses: Elastica2D uses: OSort uses: COMPASS is used by: Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX) is used by: Orientation Distribution Function in Constant Solid Angle (CSA-ODF) is used by: NiiStat is used by: NeuroElf is used by: MRIcroS is used by: GraphVar: A toolbox for comprehensive graph analyses of functional brain connectivity is used by: GIMME is used by: GazeReader is used by: Efficient Permutation Testing is used by: APERTURE is used by: Tscratch is used by: PreSurgMapp is used by: SimTracker is used by: ICASSO is used by: TherMos is used by: Mixed Effect Model of Genetic-Set and Environment Interaction is used by: FMAToolbox is used by: BABAM is used by: Soma-Segmentation is used by: SpiSOP is used by: CHIPS is used by: GrowthToolbox is used by: RNAcompete is used by: MicrobeTracker is used by: Sound Analysis Pro is used by: Vocal Inventory Clustering Engine (VoICE) is used by: Automatic Analysis is used by: Measurement Control And Data Analysis Software is used by: Fluorescent Imaging Analysis Software FIMAS is used by: GEMB is used by: IronClust is used by: PAM is used by: calciumImagingAnalysis is used by: TractionsForAll is used by: DeePVP is used by: FieldTrip is used by: Protofilament Bending Models is used by: Toolkit for MIRA LAB Striatal Segmentation is used by: EvaluateMuscleTissueWithElastography is used by: Microscopy_tif_Channel_Quant_MATLAB is used by: CARNet TFA Function is listed by: SoftCite is related to: Spatio- Spectro- Temporal Receptive Field is related to: Extensible MATLAB Medical image Analysis is related to: MultiPhase-SEG is related to: An Open-Source MATLAB-to-Python Compiler is related to: Mastrave modelling library is related to: Libeep EEGLAB plugin is related to: The Bergen fMRI Toolbox Plugin for EEGLab is related to: Electrographic Seizure Analyzer is related to: BVA import/export EEGLAB plugin is related to: ROIs selection with a non-graphical user interface is related to: Reglo ICC control with Matlab is related to: QModeling is related to: MicroFilament Analyzer is related to: Letswave is related to: KiloSort is related to: Suite2P is related to: kCSD-Matlab is related to: nonparametricGGC_toolbox is related to: User Friendly Functional Connectivity - UF²C is related to: Frozen Noise is related to: Microscopy Image Browser is related to: MrDiffusion is related to: rsfMRI_fconn calculation is related to: SPM is related to: Colour maps for brain imaging is related to: Tools for NIfTI and ANALYZE image is related to: PESTO is related to: PPR-Meta is related to: NMF Toolbox is related to: SynapseLocator is related to: SBFSEM-tools is related to: Brain Gene Expression Analysis toolbox is related to: Neural Ideal is related to: Computer Vision System Toolbox is related to: LAN toolbox is related to: hMRI-toolbox is related to: Brainstorm is related to: auto_acpc_reorient is related to: SuperSegger is related to: MNE software is related to: Toolbox for Representational Similarity Analysis is related to: Sandwich Estimator Toolbox is related to: alpha helix coordinate frame simulation is related to: ZebEyeTrack is related to: PottersWheel is related to: Calliope calcium imaging processing package is related to: MVPA Light is related to: Amsterdam Decoding And Modeling is related to: Residue Iteration Decomposition is related to: ObjectFinder is related to: Deep Learning Toolbox is required by: OSort is required by: COMPASS is required by: MicrobeTracker is required by: Wave_clus is required by: Mass Univariate ERP Toolbox is required by: Linear Fascicle Evaluation is required by: PALM works with: CoSMoMVPA works with: Nexus works with: Empirical Gramian Framework works with: OriginPro works with: circular statistics works with: MRspa works with: shiTools
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PMID:30609523 PMID:21934110 |
Restricted |
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nlx_153890 |
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SCR_001622 |
SciCrunch Registry |
matlab, MATLAB -The Language of Technical Computing, MATLAB, matrix laboratory |
2026-10-31 12:18:21 |
66533 |
AmiGO
Resource Report
Resource Website
1000+ mentions
|
AmiGO (RRID:SCR_002143)
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AmiGO
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analysis service resource, data analysis service, data or information resource, database, production service resource, service resource
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Web tool to search, sort, analyze, visualize and download data of interest. Along with providing details of the ontologies, gene products and annotations, features a BLAST search, Term Enrichment and GO Slimmer tools, the GO Online SQL Environment and a user help guide.Used at the Gene Ontology (GO) website to access the data provided by the GO Consortium. Developed and maintained by the GO Consortium.
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search, sort, analyze, visualize, data, ontology, gene, annotation, FASEB list
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uses: GOlr is used by: NIF Data Federation is listed by: OMICtools is listed by: Gene Ontology Tools is related to: ASAP is related to: Candida Genome Database is related to: Berkeley Bioinformatics Open-Source Projects is related to: ECO is related to: Zebrafish Information Network (ZFIN) is related to: Gramene is related to: WormBase is related to: NCBI Protein Database is related to: UniProtKB is related to: GeneDB Lmajor is related to: TAIR is related to: SGD is related to: GeneDB Tbrucei is related to: VMD is related to: JCVI CMR is related to: go-db-perl is related to: Mouse Genome Informatics (MGI) is related to: NCBI is related to: FlyBase is related to: GeneDB Pfalciparum is related to: PomBase is related to: Pseudomonas Genome Database is related to: Dictyostelium discoideum genome database is related to: Plant Ontology is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: MeGO is related to: ASPGD is related to: EcoCyc is related to: Reactome is related to: SGN is related to: GO-Module is related to: Songbird Brain Transcriptome Database is related to: Rat Genome Database (RGD) is related to: RamiGO has parent organization: Gene Ontology
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NHGRI P41 HG002273 |
PMID:19033274 |
Free, Available for download, Freely available |
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OMICS_02266, nif-0000-20935 |
http://sourceforge.net/projects/geneontology/ |
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SCR_002143 |
SciCrunch Registry |
GO Consortium, AmiGO, AmiGO 2, AmiGene Ontology, Gene Ontology Database, Gene Ontology Consortium, GO Database, The Gene Ontology Consortium |
2026-10-31 12:13:02 |
1285 |
neuroConstruct
Resource Report
Resource Website
10+ mentions
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neuroConstruct (RRID:SCR_007197)
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neuroConstruct
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simulation software, software application, software resource
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Software for simulating complex networks of biologically realistic neurons, i.e. models incorporating dendritic morphologies and realistic cell membrane conductance, implemented in Java and generates script files for the NEURON and GENESIS simulators, with support for other simulation platforms (including PSICS and PyNN) in development. neuroConstruct is being developed in the Silver Lab in the Department of Neuroscience, Physiology and Pharmacology at UCL and uses the latest NeuroML specifications, including MorphML, ChannelML and NetworkML. Some of the key features of neuroConstruct are: Creation of networks of biologically realistic neurons, positioned in 3D space. Complex connectivity patterns between cell groups can be specified for the networks. Can import morphology files in GENESIS, NEURON, Neurolucida, SWC and MorphML format for inclusion in network models. Simulations can be run on the NEURON or GENESIS platforms. Cellular processes (synapses/channel mechanisms) can be imported from native script files or created in ChannelML. Recording of simulation data generated by the simulation and visualization/analysis of data. Stored simulation runs can be viewed and managed through the Simulation Browser interface.
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cell, cellular, channel, conductance, data, dendrite, java, mechanism, membrane, model, morphology, network, neuron, neuronal network, pharmacology, physiology, simulation, software, synapse, visualization
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is listed by: 3DVC is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: NEURON is related to: Open Source Brain is related to: NeuroML has parent organization: University College London; London; United Kingdom
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Wellcome Trust ; MRC |
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nif-0000-00105 |
http://www.nitrc.org/projects/neuroconstruct |
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SCR_007197 |
SciCrunch Registry |
neuroConstruct: Biophysical Neural Network Modeling Software |
2026-10-31 12:14:46 |
11 |
PyNN
Resource Report
Resource Website
50+ mentions
|
PyNN (RRID:SCR_002715)
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PyNN
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software application, software development tool, software resource
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Software Python package for simulator-independent specification of neuronal network models. In other words, you can write the code for a model once, using the PyNN API, and then run it without modification on any simulator that PyNN supports (currently NEURON, NEST and PCSIM). The API has two parts, a low-level, procedural API (functions create(), connect(), set(), record(), record_v()), and a high-level, object-oriented API (classes Population and Projection, which have methods like set(), record(), setWeights(), etc.). The low-level API is good for small networks, and perhaps gives more flexibility. The high-level API is good for hiding the details and the book-keeping, and is intended to have a one-to-one mapping with FacetsML. The other thing that is required to write a model once and run it on multiple simulators is standard cell models. PyNN translates standard cell-model names and parameter names into simulator-specific names, e.g. standard model IF_curr_alpha is iaf_neuron in NEST and StandardIF in NEURON, while SpikeSourcePoisson is a poisson_generator in NEST and a NetStim in NEURON. Only a small number off cell models have been implemented so far.
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python, software
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is used by: Open Source Brain has parent organization: NeuralEnsemble
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PMID:19194529 |
Free, Available for download, Freely available |
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nif-0000-23351 |
http://pynn.gforge.inria.fr/ |
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SCR_002715 |
SciCrunch Registry |
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2026-10-31 12:21:00 |
54 |
NWB Explorer
Resource Report
Resource Website
1+ mentions
|
NWB Explorer (RRID:SCR_021151)
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data access protocol, software application, software resource, standalone software, web service
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Web application and standalone application to read, visualize and explore content of NWB:N 2 files.Used to share neurophysiological data in Neurodata Without Borders format.
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Read NWB files, visualize NWB files, explore NWB files, NWB, neurophysiology data sharing, Neurodata Without Borders format, neurophysiology data
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uses: Jupyter Notebook uses: PyNWB is listed by: Neurodata Without Borders is related to: Metacell is related to: Open Source Brain
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Wellcome Trust |
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Free, Available for download, Freely available |
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https://www.nwb.org/tools/ |
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SCR_021151 |
SciCrunch Registry |
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2026-10-31 12:18:09 |
1 |