ggrastr
Resource Report
Resource Website
1+ mentions
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ggrastr (RRID:SCR_024825)
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software toolkit, software resource
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Software R package to Rasterize Layers for ggplot2.
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Rasterize Layers for ggplot2,
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works with: ggplot2
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Free, Available for download, Freely available, |
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https://github.com/VPetukhov/ggrastr |
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SCR_024825 |
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2025-04-24 11:06:29 |
2 |
ggfortify
Resource Report
Resource Website
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ggfortify (RRID:SCR_024888)
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software resource, source code
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Software tool as unified interface to visualize statistical results of popular R packages.
Provides unified interface that enables users to use one line of code to visualize statistical results of many R packages using ggplot2 idioms. Allows ggplot2 to handle some popular R packages.
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Define fortify and autoplot functions, R packages, visualize statistical results, using ggplot2 idioms,
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uses: ggplot2
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Free, Available for download, Freely available |
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https://journal.r-project.org/archive/2016/RJ-2016-060/index.html |
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SCR_024888 |
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2025-04-24 11:06:31 |
0 |
tidybayes
Resource Report
Resource Website
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tidybayes (RRID:SCR_024889)
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software toolkit, software resource
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Software R package to integrate popular Bayesian modeling methods into tidy data plus ggplot workflow.
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Bayesian analysis, tidy data, geoms,
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works with: ggplot2
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Free, Available for download, Freely available |
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https://CRAN.R-project.org/package=tidybayes
https://github.com/mjskay/tidybayes/ |
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SCR_024889 |
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2025-04-24 11:06:31 |
0 |
ggsci
Resource Report
Resource Website
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ggsci (RRID:SCR_026471)
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software toolkit, software resource
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Software R package that provides scientific-themed color palettes for ggplot2, offering visually appealing and publication-quality color schemes inspired by scientific journals and data visualization standards.
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scientific-themed color palettes for ggplot2, quality color schemes,
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works with: ggplot2
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Free, Freely available |
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SCR_026471 |
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2025-04-24 11:07:34 |
0 |
PlotsOfData
Resource Report
Resource Website
10+ mentions
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PlotsOfData (RRID:SCR_018333)
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service resource, data analysis service, web service, software resource, data access protocol, production service resource, analysis service resource
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Web app for visualizing data together with their summaries. Visualizes data and statistics to enable comparison of experimental conditions. Written in R and uses packages including shiny, ggplot2, dplyr, tidyr, readr, magrittr, ggbeeswarm, readxl, DT. Github page of PlotsOfData can be used to trace changes between different versions.
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Data visualization, data statistics, comparison between samples, plot, graph, data
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uses: Shiny
uses: R Project for Statistical Computing
uses: RStudio
uses: ggplot2
uses: dplyr
uses: tidyr
is related to: BoxPlotR
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PMID:30917112 |
Free, Freely available |
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https://github.com/JoachimGoedhart/PlotsOfData |
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SCR_018333 |
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2025-04-25 11:07:10 |
30 |
ggrepel
Resource Report
Resource Website
10+ mentions
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ggrepel (RRID:SCR_017393)
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standalone software, software resource, software application
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Software tool to provide text and label geoms for ggplot2 that help to avoid overlapping text labels. Labels repel away from each other and away from data points.
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text, label, geoms, avoid, overlapping
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uses: ggplot2
is used by: EnhancedVolcano
has parent organization: CRAN
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Free, Available for download, Freely available |
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https://github.com/slowkow/ggrepel |
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SCR_017393 |
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2025-04-25 11:06:26 |
38 |
ggpubr
Resource Report
Resource Website
100+ mentions
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ggpubr (RRID:SCR_021139)
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software toolkit, software resource
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Software R package provides functions for creating and customizing ggplot2 based publication ready plots.Used for creation of ggplot2 based graphs.
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ggplot2, plots, data visualization, ggplot2 based graphs creation
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is used by: ggplot2
is listed by: CRAN
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Free, Available for download, Freely available |
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SCR_021139 |
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2025-04-25 11:07:56 |
112 |
EnhancedVolcano
Resource Report
Resource Website
100+ mentions
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EnhancedVolcano (RRID:SCR_018931)
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data visualization software, software application, software resource, data processing software
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Software R package to produce publication ready volcano plots with enhanced colouring and labeling. Used to visualise results of differential expression analyses.
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Publication ready plot, enhanced coloring, enhanced labeling, data visualisation, differential expression analyses, plot, volcano plot
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uses: ggplot2
uses: ggrepel
is listed by: Bioconductor
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Free, Available for download, Freely available |
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https://github.com/kevinblighe/EnhancedVolcano |
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SCR_018931 |
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2025-04-25 11:07:41 |
318 |
bio.tools
Resource Report
Resource Website
10+ mentions
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bio.tools (RRID:SCR_014695)
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catalog, data or information resource, software repository, database, software resource
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Community registry of software tools and data resources for life sciences. Tools and data services registry as community effort to document bioinformatics resources. Registry of software and databases, facilitating researchers from across spectrum of biological and biomedical science. When adding tools to registry, information including URL, contact information, resource function, field its relevant in, and its primary publication are required. Development is supported by ELIXIR - the European Infrastructure for Biological Information.
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Registry, software registry, biological tool, data services registry, services discovery portal, bio.tools
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lists: FACS
lists: Fusion Analyser
lists: AffyRNADegradation
lists: GUARDD
lists: GEOquery
lists: RNAcontext
lists: Patchwork
lists: SODOCK
lists: MIMOSA
lists: GraBCas
lists: SNAVI
lists: GENIE3
lists: Megraft
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: PeptideProphet
lists: Quant
lists: VARiD
lists: ProteinProphet
lists: Flicker
lists: ARACHNE
lists: Micro-Analyzer
lists: riboPicker
lists: dbSTS
lists: POPBAM
lists: flowPeaks
lists: cn.FARMS
lists: Sequence Search and Alignment by Hashing Algorithm
lists: SAMBLASTER
lists: Pindel
lists: Mfuzz
lists: TAPyR
lists: ContEst
lists: PGS
lists: PEPPER
lists: FPSAC
lists: FlipFlop
lists: ProGlycProt
lists: MuTect
lists: TriageTools
lists: BLASR
lists: DSRC
lists: SRMA
lists: Bowtie
lists: StringTie
lists: PhenoFam
lists: SOAP
lists: SplitSeek
lists: MUSCLE
lists: SplicePlot
lists: Illuminator
lists: GimmeMotifs
lists: Skylign
lists: BreakSeq
lists: Barrnap
lists: SLOPE
lists: CUDA-EC
lists: QualiMap
lists: massiR
lists: OmicsOffice for NGS SeqSolve
lists: QUAST
lists: GenomicTools
lists: NGSUtils
lists: TileQC
lists: Sequedex
lists: PARalyzer
lists: BFCounter
lists: TALLYMER
lists: SNPchip
lists: VAAL
lists: ProbRNA
lists: ADMIXTURE
lists: SABER
lists: piCALL
lists: CYCLE
lists: limmaGUI
lists: DEXUS
lists: KAnalyze
lists: BeadDataPackR
lists: wateRmelon
lists: NGSrich
lists: OLIN
lists: fRMA
lists: MACAT
lists: affylmGUI
lists: DictyOGlyc
lists: GlyProt
lists: CisGenome
lists: ToppCluster
lists: AnimalTFDB
lists: oneChannelGUI
lists: YinOYang
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: asSeq
lists: FARMS
lists: GERMLINE
lists: unifiedWMWqPCR
lists: HAPLOPAINTER
lists: Biocatalogue - The Life Science Web Services Registry
lists: HOMOZYGOSITYMAPPER
lists: MetaBase
lists: PyLOH
lists: InterMine
lists: myExperiment
lists: pRESTO
lists: TANGO
lists: Prediction of Amyloid Structure Aggregation
lists: PhosphoSitePlus: Protein Modification Site
lists: CCAT
lists: BREAKDANCER
lists: FACTA+.
lists: PEDIGRAPH
lists: CQN
lists: CanSNPer
lists: SamSPECTRAL
lists: TEMP
lists: MEME Suite - Motif-based sequence analysis tools
lists: SNPAAMapper
lists: Pecan
lists: InteroPorc
lists: AffyPipe
lists: ADaCGH2
lists: DINDEL
lists: ASPGD
lists: Candida Genome Database
lists: BISC
lists: PurBayes
lists: SNVer
lists: Cake
lists: S-MART
lists: SHORTY
lists: Pathway Commons
lists: TcoF
lists: BEETL-fastq
lists: SBARS
lists: cpnDB: A Chaperonin Database
lists: cisRED: cis-regulatory element
lists: FlyFactorSurvey
lists: pymzML
lists: EchoBASE
lists: Blood Group Antigen Gene Mutation Database
lists: WebGeSTer DB
lists: RUbioSeq
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: MethylAid
lists: ExomeDepth
lists: ZOOM
lists: Iterative Signature Algorithm
lists: ShotGun
lists: Pathview
lists: T3DB
lists: Autophagy Database
lists: rBiopaxParser
lists: QualitySNPng
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: libCSAM
lists: RopeBWT2
lists: NetPathMiner
lists: BioNumbers
lists: leeHom
lists: tweeDEseq
lists: ProRata
lists: Coding Potential Calculator
lists: CPTRA
lists: MFEprimer
lists: Distant Regulatory Elements
lists: HGNC
lists: GATE
lists: SuperPred: Drug classification and target prediction
lists: hot scan
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: Primer3Plus
lists: pairheatmap
lists: BioJS
lists: ms lims
lists: Eukaryotic Linear Motif
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: HYDEN
lists: drFAST
lists: GeneFisher
lists: GreenPhylDB
lists: MiST - Microbial Signal Transduction database
lists: Pipeliner
lists: Gene Set Enrichment Analysis
lists: Piano
lists: Weighted Gene Co-expression Network Analysis
lists: FastSNP
lists: Triplex
lists: mrsFAST
lists: GenePattern
lists: NovelSeq
lists: QDNAseq
lists: MutDB
lists: SplicingCompass
lists: deFuse
lists: Database of Interacting Proteins (DIP)
lists: Assembly Based ReAligner
lists: MAGE-TAB
lists: ggbio
lists: miR-PREFeR
lists: NanoStringNorm
lists: MIPgen
lists: HTqPCR
lists: Parseq
lists: T-profiler
lists: Bpipe
lists: jmzTab
lists: L-Measure
lists: Snakemake
lists: PoPoolation
lists: MultiPhen
lists: PheWAS R Package
lists: Quantitative Enrichment of Sequence Tags
lists: ALDEx2
lists: INMEX
lists: InsertionMapper
lists: BSRD
lists: SeWeR - SEquence analysis using WEb Resources
lists: Segway - a way to segment the genome
lists: Stem Cell Discovery Engine
lists: TagDust
lists: Kdetrees
lists: Tree and reticulogram REConstruction
lists: NEWT
lists: DER Finder
lists: BioPig
lists: Selectome: a Database of Positive Selection
lists: Distributed String Mining Framework
lists: PILGRM
lists: Apo and Holo structures DataBase
lists: MLTreeMap
lists: MG-RAST
lists: miRNAKey
lists: SVseq
lists: Small Molecule Pathway Database
lists: Information Hyperlinked Over Proteins
lists: SVMerge
lists: BioSample Database at EBI
lists: MetaPhyler
lists: SOPRA
lists: NCBI BioSystems Database
lists: SLIQ
lists: G-BLASTN
lists: SSPACE
lists: AmphoraNet
lists: NCBI Structure: Cn3D
lists: DELLY
lists: RUM
lists: STING Report
lists: SoyBase
lists: SINA
lists: Strelka
lists: RNA-eXpress
lists: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
lists: VFS
lists: ShoRAH
lists: READSCAN
lists: ERANGE
lists: GeneTalk
lists: ORMAN
lists: SEECER
lists: Scripture
lists: SPOT - Biological prioritization after a SNP association study
lists: NCBO Annotator
lists: CoPub
lists: SolexaQA
lists: PHAge Search Tool
lists: Knime4Bio
lists: MethPipe
lists: Bis-SNP
lists: GobyWeb
lists: EMAGE Gene Expression Database
lists: FusionMap
lists: Yabi
lists: GSNAP
lists: rQuant
lists: MethylViewer
lists: DistMap
lists: PASS
lists: mrFAST
lists: Kismeth
lists: Stampy
lists: TreQ
lists: FLASH
lists: SAMStat
lists: PRINSEQ
lists: MethylomeDB
lists: SOAPaligner/soap2
lists: TMA Navigator
lists: TRANSFAC
lists: SeqMap
lists: Bambino
lists: MicrobesOnline
lists: DMRforPairs
lists: TIGRFAMS
lists: CLIPZ
lists: SNPsandGO
lists: ToppGene Suite
lists: SeqTrace
lists: GoSurfer
lists: Jellyfish
lists: GoFish
lists: WEGO - Web Gene Ontology Annotation Plot
lists: ngsTools
lists: GraphProt
lists: SerbGO
lists: GoPubMed
lists: ccPDB - Compilation and Creation of datasets from PDB
lists: DOMMINO - Database Of MacroMolecular INteractiOns
lists: SOURCE
lists: DistiLD - Diseases and Traits in LD
lists: PePr
lists: Expression Profiler
lists: eQuilibrator
lists: DiseaseMeth
lists: Dr.VIS - Human Disease-Related Viral Integration Sites
lists: FunTree
lists: DBETH - Database for Bacterial ExoToxins for Humans
lists: BLESS
lists: GWASdb
lists: HFV Database
lists: IndelFR - Indel Flanking Region Database
lists: MIPModDB
lists: Europe PubMed Central
lists: CharProtDB: Characterized Protein Database
lists: IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature
lists: MMMDB - Mouse Multiple tissue Metabolome DataBase
lists: ICEberg
lists: VirHostNet: Virus-Host Network
lists: Cascade
lists: Polbase
lists: VIRsiRNAdb
lists: 959 Nematode Genomes
lists: OGEE - Online GEne Essentiality database
lists: ProPortal
lists: SNPedia
lists: Newtomics
lists: HotRegion - A Database of Cooperative Hotspots
lists: SitEx
lists: ScerTF
lists: HMM-TM
lists: NRG-CING
lists: PRED-LIPO
lists: InterEvol database
lists: SpliceDisease
lists: RNA CoSSMos
lists: deepSNV
lists: PRED-GPCR
lists: RecountDB
lists: VICUNA
lists: ProRepeat
lists: MouseBook
lists: COEUS
lists: Predictive Networks
lists: PRED-SIGNAL
lists: Flycircuit
lists: COLT-Cancer
lists: ATRHUNTER
lists: GeneTrail
lists: epigenomix
lists: Pseudomonas Genome Database
lists: QCGWAS
lists: TSSer
lists: UMD-BRCA1/ BRCA2 databases
lists: PomBase
lists: Phytozome
lists: OMPdb
lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists: MSIsensor
lists: GWAMA
lists: SpliceTrap
lists: ViralZone
lists: waviCGH
lists: MyHits
lists: Decombinator
lists: CAPS Database
lists: ADGO
lists: zfishbook
lists: EagleView
lists: Gene Expression Database
lists: SRAdb
lists: BEDTools
lists: IMGT/GENE-DB
lists: RamiGO
lists: canSAR
lists: IMGT/LIGM-DB
lists: PLEXdb - Plant Expression Database
lists: COHCAP
lists: DARC - Database for Aligned Ribosomal Complexes
lists: Immune Epitope Database and Analysis Resource (IEDB)
lists: AutismKB
lists: RIKEN integrated database of mammals
lists: Myrna
lists: PhenoM - Phenomics of yeast Mutants
lists: BIGpre
lists: HIstome: The Histone Infobase
lists: TriTrypDB
lists: CuticleDB
lists: Midbody, Centrosome and Kinetochore
lists: SCOP: Structural Classification of Proteins
lists: Expression Database in 4D
lists: VIDA
lists: Database of Arabidopsis Transcription Factors
lists: Atlas of Genetics and Cytogenetics in Oncology and Haematology
lists: ESEfinder 3.0
lists: agriGO
lists: Taipan
lists: AgBase
lists: Chromosome 7 Annotation Project
lists: MEROPS
lists: T1DBase
lists: Hyper Cell Line Database
lists: GenoTan
lists: VISTA Browser
lists: lobSTR
lists: Candidate Genes to Inherited Diseases
lists: VISTA Enhancer Browser
lists: Gene Array Analyzer
lists: Network Analysis, Visualization and Graphing TORonto
lists: MuSiC
lists: MfunGD - MIPS Mouse Functional Genome Database
lists: eTBlast
lists: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)
lists: FGDP
lists: hiPathDB - human integrated Pathway DB with facile visualization
lists: miRNEST
lists: neXtProt
lists: NetOGlyc
lists: QuasiRecomb
lists: GMAP
lists: iMir
lists: MaCH-Admix
lists: SeqBuster
lists: LegumeIP
lists: DNAtraffic
lists: MicroSNiPer
lists: Pathema
lists: BeeBase
lists: Geneious
lists: MOSCPHASER
lists: SNPinfo Web Server
lists: elastix
lists: MIRA
lists: NEBcutter
lists: CopySeq
lists: CUPSAT
lists: Atlas2
lists: ALLPATHS-LG
lists: Velvet
lists: HomSI
lists: SVDetect
lists: omiRas
lists: HMCan
lists: HapFABIA
lists: WEBLOGO
lists: ZINBA
lists: SICER
lists: kmer-SVM
lists: MAnorm
lists: Pedimap
lists: nucleR
lists: CEQer
lists: MutSig
lists: DIANA-LncBase
lists: MethMarker
lists: PeakRanger
lists: PlnTFDB
lists: CloudBurst
lists: NPS
lists: MutationTaster
lists: ProDesign
lists: OligoArray
lists: ArrayAnalysis.org
lists: PatMaN
lists: SEAL
lists: Asterias
lists: RACE
lists: RobiNA
lists: CANGS
lists: PlantTFcat
lists: LitInspector
lists: HSLPred
lists: PSAR-Align
lists: CancerResource
lists: JiffyNet
lists: ECHO
lists: GPU-Meta-Storms
lists: GenoREAD
lists: TopHat-Fusion
lists: GeneStitch
lists: FABIA
lists: CPFP
lists: MFPaQ
lists: ICPL ESIQuant
lists: easyRNASeq
lists: PREDDIMER
lists: NetCoffee
lists: SlideSort-BPR
lists: miRPlant
lists: AlienTrimmer
lists: PRIDE Converter 2
lists: SNP ratio test
lists: compomics-utilities
lists: Allim
lists: PLEK
lists: ISDTool
lists: OBI-Warp
lists: LocalAli
lists: iceLogo
lists: multiplierz
lists: AMS
lists: NGSmethDB
lists: PoolHap
lists: DNaseR
lists: Btrim
lists: COBRApy
lists: NAIL
lists: CAZy- Carbohydrate Active Enzyme
lists: A5-miseq
lists: ANNOVAR
lists: GENSCAN
lists: PhosphoSiteAnalyzer
lists: MethylCoder
lists: featureCounts
lists: LOCAS
lists: Scalpel
lists: Cell motility
lists: Mouse Genome Database
lists: CloudAligner
lists: HeurAA
lists: GSA-SNP
lists: seqMINER
lists: PolyPhen: Polymorphism Phenotyping
lists: rqubic
lists: PlantNATsDB - Plant Natural Antisense Transcripts DataBase
lists: MitoBreak
lists: Cube-DB
lists: Death Domain database
lists: Telescoper
lists: Crossbow
lists: MToolBox
lists: GENE-counter
lists: BEADS
lists: PLAN2L
lists: INCLUSive
lists: CSAR
lists: ApiDB CryptoDB
lists: MACS
lists: NNcon
lists: KAVIAR
lists: GeneSigDB
lists: psRNATarget
lists: Composition Profiler
lists: MINAS - Metal Ions in Nucleic AcidS
lists: EGSEA
lists: Crystallography and NMR System (CNS)
lists: Morpheus
lists: IUPHAR/BPS Guide to Pharmacology
lists: RAST Server
lists: ProteomicsDB
lists: SPEX2
lists: LTR_Finder
lists: SCRATCH
lists: DSAP
lists: PALEOMIX
lists: Buccaneer
lists: QuantiSNP
lists: ProtTest
lists: MultiQC
lists: GeneWise
lists: DISEASES
lists: Off-Spotter
lists: oligo
lists: 3D-footprint
lists: SC3
lists: MS-GF+
lists: TISSUES
lists: TFBS
lists: CHiCAGO
lists: Poretools
lists: Membrane Protein Explorer
lists: FATCAT
lists: Bio-tradis
lists: ALTER
lists: HISAT2
lists: MetaMapR
lists: PhyD3
lists: Exonerate
lists: primers4clades
lists: Fastml
lists: Bamtools
lists: Genesis
lists: DISULFIND
lists: EnrichmentMap
lists: LoRDEC
lists: mentha
lists: IDEPI - IDentify EPItopes
lists: Oufti
lists: FluxModeCalculator
lists: eXpression2Kinases
lists: SMAGEXP
lists: ProCon - PROteomics CONversion
lists: Lifebit Deploit
lists: TRANSIT
lists: Splicing Express
lists: Microscopy Image Browser
lists: SARTools
lists: SPICE
lists: DINIES
lists: OmicsNet
lists: ngsRelate
lists: clusterProfiler
lists: NetworkAnalyst
lists: FRETBursts
lists: Thunder STORM
lists: ANOCVA
lists: ConsensusClusterPlus
lists: CIBERSORT
lists: CCTOP
lists: scran
lists: Rsubread
lists: Heatmapper
lists: BinPacker
lists: Subread
lists: UMI-tools
lists: Goseq
lists: PRSice
lists: ScaffMatch
lists: EMBOSSMatcher
lists: JAMM
lists: CentroidFold
lists: Gigwa
lists: FastProject
lists: GeSeq
lists: ComplexHeatmap
lists: PatchDock
lists: Proovread
lists: trimAl
lists: ExPASy ABCD database
lists: shinyGEO
lists: AmoebaDB
lists: Blood Exposome Database
lists: STRUCTURE
lists: NetPhos
lists: Geneshot
lists: ProtParam Tool
lists: HiC-Pro
lists: HingeProt
lists: Mousebytes
lists: iTOL
lists: ChiCMaxima
lists: SWISS-MODEL
lists: PASTEClassifier
lists: R/qtl2
lists: FlowCal
lists: Signaling Pathways Project
lists: GPS-SUMO
lists: Roary
lists: SpydrPick
lists: ProSA-web
lists: SIGNOR
lists: MaxAlign
lists: REDIportal
lists: EpiModel
lists: Protein Interactions Calculator
lists: rVista
lists: Minimap2
lists: PrognoScan
lists: Batch Web CD-Search Tool
lists: AlgPred
lists: GOnet
lists: GalaxyWEB
lists: GalaxyRefine
lists: Annotree
lists: khmer
lists: E-CRISP
lists: Robetta
lists: D-GENIES
lists: aroma.light
lists: Clustal Omega
lists: DESeq
lists: VICMpred
lists: Ray
lists: Apollo
lists: STAMP
lists: discoSnp
lists: vcflib
lists: IgBLAST
lists: BioPerl
lists: Genome BioInformatics Research Lab - gff2ps
lists: Rainbow
lists: Predictions for Entire Proteomes
lists: Stacks
lists: Clustal W2
lists: RNAhybrid
lists: Primer3
lists: SAMtools/BCFtools
lists: EBSeq
lists: biobambam
lists: DIALIGN
lists: Unipro UGENE
lists: Bowtie 2
lists: Artemis: Genome Browser and Annotation Tool
lists: WHAM
lists: Database of Secondary Structure Assignments
lists: Minia
lists: HTSeq
lists: RAxML
lists: Sickle
lists: Segemehl
lists: Staden Package
lists: Bismark
lists: NCBI BLAST
lists: Vienna RNA
lists: GBrowse
lists: ea-utils
lists: AmpliconNoise
lists: COILS: Prediction of Coiled Coil Regions in Proteins
lists: BitSeq
lists: HilbertVis
lists: VARSCAN
lists: Regulatory Sequence Analysis Tools
lists: CD-HIT
lists: MACH
lists: SOAPsnp
lists: ProbCons
lists: BEAST
lists: Crux tandem mass spectrometry analysis software
lists: Pscan-ChIP
lists: BRIG
lists: tRNAscan-SE
lists: CGView
lists: Circos
lists: FreeBayes
lists: Glimmer
lists: T-Coffee
lists: Oases
lists: LIMMA
lists: cutadapt
lists: SSAKE
lists: edgeR
lists: OpenMS
lists: Flexbar
lists: SIFT
lists: Mauve
lists: Kalign
lists: RSEM
lists: TopHat
lists: DNAcopy
lists: phyloseq
lists: Trinity
lists: AMOS
lists: FastTree
lists: Cufflinks
lists: Prokka
lists: PAML
lists: CummeRbund
lists: GROMACS
lists: minet
lists: Atac
lists: Pilon
lists: GMA
lists: Nanopolish
lists: Krona
lists: SeqPrep
lists: SortMeRNA
lists: THESIAS
lists: tximport
lists: StoatyDive
lists: rCASC
lists: precrec
lists: IMGT-ONTOLOGY
lists: KAT
lists: globaltest
lists: COPASI
lists: CheckM
lists: Blobtools
lists: NiftyPET
lists: SeaView
lists: ASHLAR
lists: KisSplice
lists: metagen
lists: BUSCO
lists: BLINK
lists: bridge
lists: Fcirc
lists: becas
lists: bwtool
lists: TGS-GapCloser
lists: chimerascan
lists: GLUE
lists: mosdepth
lists: dcmqi
lists: SwiftOrtho
lists: andi
lists: metahdep
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lists: EpiDISH R package
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lists: Experimental Design Assistant
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lists: European Variation Archive (EVA)
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lists: An Integrated Multiple Structure Visualization and Multiple Sequence Alignment Application
lists: FlexProt: flexible protein alignment
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lists: Genomic Annotation in Livestock for positional candidate LOci
lists: Generic GO Term Finder
lists: GermOnline
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lists: GFINDer: Genome Function INtegrated Discoverer
lists: Generic GO Term Mapper
lists: Google
lists: Gene Ontology
lists: Genome Aggregation Database
lists: Gmove
lists: Git
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lists: G protein receptor interaction feature finding instrument
lists: Graph2GO
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lists: GMcloser
lists: Genovar
lists: Human Gene Mutation Database
lists: H-InvDB
lists: Bioinformatic Harvester IV (beta) at Karlsruhe Institute of Technology
lists: GRASS
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lists: International HapMap Project
lists: HASTE-project
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lists: HAPLOCLUSTERS
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lists: Homologous Sequences in Ensembl Animal Genomes
lists: Human Splicing Finder
lists: HPEPDOCK Server
lists: HS-TDT
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lists: IBIS: Inferred Biomolecular Interactions Server
lists: hyfi: software suite for binding site search
lists: HiCUP
lists: Human Gene Connectome Server
lists: Identifiers.org
lists: HUGE - Human Unidentified Gene-Encoded large proteins
lists: Hybrid-denovo
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lists: IntEnz- Integrated relational Enzyme database
lists: IMG System
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lists: HiPipe
lists: IMGT/StatClonotype
lists: I-TASSER
lists: IRESite
lists: IMEx - The International Molecular Exchange Consortium
lists: IMGT/HLA
lists: ImJoy
lists: IMGT HighV-QUEST
lists: IMGT - the international ImMunoGeneTics information system
lists: IsoEM
lists: IPD - Immuno Polymorphism Database
lists: iPiG
lists: IPI
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lists: inGAP
lists: ISFinder
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lists: IsoLasso
lists: LAST
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lists: lncRNAdb
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lists: KGGSeq
lists: LDSELECT
lists: Magic
lists: JGI Genome Portal
lists: lme4
lists: MAP
lists: OntoQuest
lists: Database oDatabase of Predicted Subcellular Localization for Eukaryotic PDB Chainsf Predicted Subcellular Localization for Eukaryotic PDB Chains
lists: MACiE
lists: LitMiner
lists: long-read-tools
lists: LOCATE: subcellular localization database
lists: LTR_FINDER_parallel
lists: Maq
lists: MaizeGDB
lists: Mammalian Gene Collection
lists: Machado
lists: LRPath
lists: MentaLiST
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lists: MEBS: Multigenomic Entropy-Based Score
lists: Libra
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lists: MetAMOS
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lists: MBGD - Microbial Genome Database
lists: MB-GAN
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lists: Metabolomics Workbench
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lists: MendelIHT.jl
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lists: MIRIAM Resources
lists: MaSuRCA
lists: UEA sRNA Workbench
lists: MetaVelvet
lists: miROrtho: the catalogue of animal microRNA genes
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lists: MPscan
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lists: MultiLoc
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lists: Multi-omics Visualization Platform
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lists: Myriads
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lists: Multiple Myeloma survival predictor
lists: mrCaNaVaR
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lists: mzMatch
lists: Mouse Phenome Database (MPD)
lists: NCBI
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lists: NetMHCpan Server
lists: miRpathDB
lists: NEMBASE
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lists: Nephele
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lists: Omics Data Paper Generator
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lists: NEST Simulator
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lists: Open Trials
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lists: OsiriX Medical Imaging Software
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lists: PAZAR
lists: PDBe - Protein Data Bank in Europe
lists: PanoramaWeb
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lists: PEDHUNTER
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lists: Illuminating the Druggable Genome
lists: Phenotypes and eXposures Toolkit
lists: PeakSeq
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lists: PicTar
lists: Pash 3.0
lists: Pedigree-Draw
lists: OLego
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lists: Phylogeny.fr
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lists: Plant Co-expression Annotation Resource
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lists: SNP HITLINK
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lists: rnaSPAdes
lists: SpliceMap
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lists: TAndem Splice Site DataBase
lists: SoupX
lists: StSNP
lists: T-lex
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lists: SynergyFinder
lists: topGO
lists: TAPIR: target prediction for plant microRNAs
lists: TDT-PC
lists: TDR Targets Database
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lists: SWISS-2DPAGE
lists: Spot
lists: TAGS
lists: SYFPEITHI: A Database for MHC Ligands and Peptide Motifs
lists: SUMSTAT
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lists: TreeDyn
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lists: TB PORTALS
lists: SwissTree
lists: tradeSeq
lists: FLUX CAPACITOR
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lists: Transporter Classification Database
lists: ApiDB ToxoDB
lists: Trowel
lists: TopFIND
lists: TRAL
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lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: IQ-TREE
lists: VirusSeq
lists: Tool recommender system in Galaxy
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lists: SPIKE
lists: Trans-ABySS
lists: TRiCoLOR
lists: TomoMiner
lists: variancePartition
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lists: USeq
lists: Zebrafish Information Network (ZFIN)
lists: XPN
lists: TransmiR
lists: Webproanalyst
lists: UTGB Toolkit
lists: VAAST
lists: VirusHunter
lists: Yeast Search for Transcriptional Regulators And Consensus Tracking
lists: zUMIs
lists: VaDiR
lists: WSsas - Web Service for the SAS tool
lists: VFDB - Virulence Factors of Bacterial Pathogens
lists: Gene Index Project
lists: Vector Alignment Search Tool
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lists: Xenbase
lists: xia2 pipeline
lists: YASARA
lists: Visualization and Analysis of Networks containing Experimental Data (VANTED)
lists: VisSR
lists: dbEST
lists: DESeq2
lists: DNA DataBank of Japan (DDBJ)
lists: FASTX-Toolkit
lists: Trimmomatic
lists: VIPERdb
lists: PhenStat
lists: ABySS
lists: Integrative Genomics Viewer
lists: Human Disease Ontology
lists: LINKAGE
lists: ConSurf Database
lists: Protein Information Resource
lists: PredictNLS
lists: tRNAscan-SE
lists: VeryFastTree
lists: RSEM
lists: Emboss Water
is listed by: Debian
is listed by: ELIXIR Tools and Data Services Registry
is affiliated with: ELIXIR Tools and Data Services Registry
is related to: ms-utils.org
is related to: SUP
|
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European Union Horizon 2020 ELIXIR-EXCELERATE grant 676559;
Danish Ministry of Higher Education and Science |
DOI:10.1186/s13059-019-1772-6
PMID:26538599 |
Free, Freely available |
|
biotools:bio.tools |
https://github.com/bio-tools/biotoolsRegistry/
https://bio.tools/bio.tools |
http://bio.tools |
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SCR_014695 |
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2025-04-25 11:04:20 |
18 |
metaviz
Resource Report
Resource Website
1+ mentions
|
metaviz (RRID:SCR_025424)
|
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data processing software, source code, software toolkit, data visualization software, software resource, software application
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Software R package to create plots of meta-analytic data. Used to create forest plots, funnel plots, and their variants, such as rainforest plots, thick forest plots, additional evidence contour funnel plots, and sunset funnel plots. In addition, functionalities for visual inference with funnel plot in context of meta-analysis are provided.
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Forest plot, funnel plot variants, meta-analysis
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uses: ggplot2
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Free, Available for download, Freely available, |
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https://github.com/Mkossmeier/metaviz |
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SCR_025424 |
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2025-04-25 11:10:42 |
1 |
GGally
Resource Report
Resource Website
1+ mentions
|
GGally (RRID:SCR_026114)
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software toolkit, software resource, source code
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Software R package that extends ggplot2 by adding several functions to reduce complexity of combining geoms with transformed data. Some of these functions include pairwise plot matrix, scatterplot plot matrix, parallel coordinates plot, survival plot, and several functions to plot networks.
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extends ggplot2, reduce complexity of combining geoms with transformed data, reduce complexity, combining geoms, transformed data,
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is related to: ggplot2
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Free, Available for download, Freely available |
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SCR_026114 |
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2025-04-25 11:10:55 |
3 |
